Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00371

Orthogroup ID

OG0016304

Physical Location & Seq

Genomic Coordinates Reverse (-)

27139 .. 29338

Gene Structure 2200 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G009450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGGCCATTCAATTAATTAACCATGGAAACCTAAAGAACACTACTTCAGTTAGGCTTCAATATAAAAATGAGGTGGAGGTGGTCTCGGGTCTTATAGGTGGTGGAAGACAGCGACAAGGGATGGTGGTGATGGAGAGAGCTGCACTGAAAGCTAAACAGAAGCGTTTCCAAGAAGAGAGGCATAACTTTAGGCTTTATACACTGAAAAATAATGAAGTGCTTGCTAAGGAGGCGGCAGACGTCCTAAGTCAGAAGCACCGGGGTTATGACATTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

92

Amino Acids

10.55

Weight (kDa)

10.06

Isoelectric Point (pI)

32.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016304)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g11882 FvH4_6g30062
rosa_chinensis	RchiOBHm_Chr2g0117601 RchiOBHm_Chr2g0126381 RchiOBHm_Chr2g0131431
rosa_multiflora	Rmu_sc0006695.1_g000083 Rmu_sc0038051.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056080 Rroxscaffold_3G00246990
rosa_samantha	Rh2BG328300 Rh5BG101500 Rh6AG125000 Rh6CG200400
rosa_wichuraiana	Rw0G009450 Rw2G022640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	243
AciI	CCGC	1 cut(s)	233
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	30
AcyI	GRCGYC	1 cut(s)	240
AgsI	TTSAA	2 cut(s)	11, 59
AluBI	AGCT	2 cut(s)	140, 152
AluI	AGCT	2 cut(s)	140, 152
Alw26I	GTCTC	1 cut(s)	88
Ama87I	CYCGRG	1 cut(s)	85
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	140
AseI	ATTAAT	1 cut(s)	14
Asp700I	GAANNNNTTC	1 cut(s)	164
AsuC2I	CCSGG	1 cut(s)	260
AsuHPI	GGTGA	1 cut(s)	139
AvaI	CYCGRG	1 cut(s)	85
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	112
BbvI	GCAGC	1 cut(s)	127
BccI	CCATC	2 cut(s)	115, 124
BcnI	CCSGG	1 cut(s)	260
BcoDI	GTCTC	1 cut(s)	88
BisI	GCNGC	2 cut(s)	141, 234
BlsI	GCNGC	2 cut(s)	142, 235
Bme1390I	CCNGG	1 cut(s)	260
BmeT110I	CYCGRG	1 cut(s)	85
BmrFI	CCNGG	1 cut(s)	260
BpiI	GAAGAC	1 cut(s)	112
BplI	GAGNNNNNCTC	2 cut(s)	68, 100
Bpu10I	CCTNAGC	1 cut(s)	225
BpuMI	CCSGG	1 cut(s)	260
BsaHI	GRCGYC	1 cut(s)	240
BsaI	GGTCTC	1 cut(s)	88
BsaJI	CCNNGG	2 cut(s)	22, 259
BseDI	CCNNGG	2 cut(s)	22, 259
BseGI	GGATG	1 cut(s)	126
BseXI	GCAGC	1 cut(s)	127
BsgI	GTGCAG	1 cut(s)	126
BshFI	GGCC	1 cut(s)	5
BsiHKCI	CYCGRG	1 cut(s)	85
BsiSI	CCGG	1 cut(s)	259
BsmAI	GTCTC	1 cut(s)	88
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	88
BsoBI	CYCGRG	1 cut(s)	85
Bsp19I	CCATGG	1 cut(s)	22
BspACI	CCGC	1 cut(s)	233
BspANI	GGCC	1 cut(s)	5
BspTNI	GGTCTC	1 cut(s)	88
BssECI	CCNNGG	2 cut(s)	22, 259
BssNI	GRCGYC	1 cut(s)	240
BssT1I	CCWWGG	1 cut(s)	22
Bst6I	CTCTTC	1 cut(s)	168
BstACI	GRCGYC	1 cut(s)	240
BstC8I	GCNNGC	1 cut(s)	222
BstDEI	CTNAG	2 cut(s)	225, 245
BstDSI	CCRYGG	1 cut(s)	22
BstF5I	GGATG	1 cut(s)	126
BstMAI	GTCTC	1 cut(s)	88
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 230
BstSCI	CCNGG	1 cut(s)	258
BstV1I	GCAGC	1 cut(s)	127
BstV2I	GAAGAC	1 cut(s)	112
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	22
BtsCI	GGATG	1 cut(s)	126
BtsIMutI	CAGTG	2 cut(s)	143, 200
Cac8I	GCNNGC	1 cut(s)	222
CviAII	CATG	1 cut(s)	23
CviJI	RGCY	5 cut(s)	5, 55, 140, 152, 193
CviKI_1	RGCY	5 cut(s)	5, 55, 140, 152, 193
DdeI	CTNAG	2 cut(s)	225, 245
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	168
EarI	CTCTTC	1 cut(s)	168
Eco130I	CCWWGG	1 cut(s)	22
Eco31I	GGTCTC	1 cut(s)	88
Eco57I	CTGAAG	1 cut(s)	30
Eco88I	CYCGRG	1 cut(s)	85
EcoT14I	CCWWGG	1 cut(s)	22
ErhI	CCWWGG	1 cut(s)	22
FaeI	CATG	1 cut(s)	26
FaiI	YATR	6 cut(s)	24, 63, 95, 183, 198, 267
FatI	CATG	1 cut(s)	22
Fnu4HI	GCNGC	2 cut(s)	141, 234
FokI	GGATG	1 cut(s)	133
Fsp4HI	GCNGC	2 cut(s)	141, 234
GluI	GCNGC	2 cut(s)	141, 234
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	259
Hin1I	GRCGYC	1 cut(s)	240
Hin1II	CATG	1 cut(s)	26
HpaII	CCGG	1 cut(s)	259
HphI	GGTGA	1 cut(s)	139
Hpy188I	TCNGA	1 cut(s)	252
HpyCH4IV	ACGT	1 cut(s)	240
HpyCH4V	TGCA	1 cut(s)	143
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 230
HpyF3I	CTNAG	2 cut(s)	225, 245
HpySE526I	ACGT	1 cut(s)	240
Hsp92I	GRCGYC	1 cut(s)	240
Hsp92II	CATG	1 cut(s)	26
LpnPI	CCDG	1 cut(s)	272
Lsp1109I	GCAGC	1 cut(s)	127
MaeII	ACGT	1 cut(s)	240
MboII	GAAGA	2 cut(s)	117, 185
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	11, 15
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	4 cut(s)	64, 70, 171, 223
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	164
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	14, 18
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	259
MspR9I	CCNGG	1 cut(s)	260
MwoI	GCNNNNNNNGC	2 cut(s)	149, 230
NciI	CCSGG	1 cut(s)	260
NcoI	CCATGG	1 cut(s)	22
NlaIII	CATG	1 cut(s)	26
PacI	TTAATTAA	1 cut(s)	18
PdmI	GAANNNNTTC	1 cut(s)	164
PkrI	GCNGC	2 cut(s)	142, 235
PshBI	ATTAAT	1 cut(s)	14
SaqAI	TTAA	2 cut(s)	14, 18
SatI	GCNGC	2 cut(s)	141, 234
ScrFI	CCNGG	1 cut(s)	260
SetI	ASST	7 cut(s)	33, 75, 81, 100, 142, 154, 243
SgeI	CNNG	8 cut(s)	35, 97, 99, 128, 182, 233, 271, 272
Sse9I	AATT	2 cut(s)	11, 15
SsiI	CCGC	1 cut(s)	233
StyD4I	CCNGG	1 cut(s)	258
StyI	CCWWGG	1 cut(s)	22
TaiI	ACGT	1 cut(s)	243
TasI	AATT	2 cut(s)	11, 15
TauI	GCSGC	1 cut(s)	236
Tru1I	TTAA	2 cut(s)	14, 18
Tru9I	TTAA	2 cut(s)	14, 18
TscAI	CASTG	2 cut(s)	150, 207
TseI	GCWGC	1 cut(s)	140
TspDTI	ATGAA	1 cut(s)	228
TspRI	CASTG	2 cut(s)	150, 207
VspI	ATTAAT	1 cut(s)	14
XmnI	GAANNNNTTC	1 cut(s)	164
ZraI	GACGTC	1 cut(s)	241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.