Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0038051.1

Orthogroup ID

OG0016304

Physical Location & Seq

Genomic Coordinates Reverse (-)

474 .. 1056

Gene Structure 583 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0038051.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ctgaagacccatattgaggctttgacagaaatacgggttggtcttcttttaagggctaactcaaggacctggaaacaaaatctttttgaggagagagctgcactgaaagctaaacagaagcgtttccaagaacagaggcataactttaggctttatacactgaaaaataatgaagtgcttgctaaggagatcacagagcatgatgaagaggctttcatgagctttgatgtgtttgttgacaggcggcagacgtcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

85

Amino Acids

10.23

Weight (kDa)

9.52

Isoelectric Point (pI)

64.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016304)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g11882 FvH4_6g30062
rosa_chinensis	RchiOBHm_Chr2g0117601 RchiOBHm_Chr2g0126381 RchiOBHm_Chr2g0131431
rosa_multiflora	Rmu_sc0006695.1_g000083 Rmu_sc0038051.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056080 Rroxscaffold_3G00246990
rosa_samantha	Rh2BG328300 Rh5BG101500 Rh6AG125000 Rh6CG200400
rosa_wichuraiana	Rw0G009450 Rw2G022640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	254
AciI	CCGC	1 cut(s)	244
AcuI	CTGAAG	1 cut(s)	23
AcyI	GRCGYC	1 cut(s)	251
AfiI	CCNNNNNNNGG	1 cut(s)	16
AjnI	CCWGG	1 cut(s)	68
AjuI	GAANNNNNNNTTGG	2 cut(s)	21, 53
AluBI	AGCT	3 cut(s)	98, 110, 222
AluI	AGCT	3 cut(s)	98, 110, 222
ApeKI	GCWGC	1 cut(s)	98
Asp700I	GAANNNNTTC	1 cut(s)	122
AspS9I	GGNCC	1 cut(s)	66
AvaII	GGWCC	1 cut(s)	66
BbsI	GAAGAC	2 cut(s)	11, 35
BbvI	GCAGC	1 cut(s)	85
BciT130I	CCWGG	1 cut(s)	70
BisI	GCNGC	2 cut(s)	99, 245
BlsI	GCNGC	2 cut(s)	100, 246
Bme1390I	CCNGG	1 cut(s)	70
Bme18I	GGWCC	1 cut(s)	66
BmgT120I	GGNCC	1 cut(s)	66
BmrFI	CCNGG	1 cut(s)	70
BpiI	GAAGAC	2 cut(s)	11, 35
Bpu10I	CCTNAGC	1 cut(s)	183
BpuEI	CTTGAG	1 cut(s)	46
BsaHI	GRCGYC	1 cut(s)	251
Bsc4I	CCNNNNNNNGG	1 cut(s)	16
BseBI	CCWGG	1 cut(s)	70
BseLI	CCNNNNNNNGG	1 cut(s)	16
BseRI	GAGGAG	1 cut(s)	104
BseXI	GCAGC	1 cut(s)	85
BsgI	GTGCAG	1 cut(s)	84
BslI	CCNNNNNNNGG	1 cut(s)	16
Bsp143I	GATC	1 cut(s)	189
BspACI	CCGC	1 cut(s)	244
BspHI	TCATGA	1 cut(s)	216
BssMI	GATC	1 cut(s)	189
BssNI	GRCGYC	1 cut(s)	251
Bst2UI	CCWGG	1 cut(s)	70
Bst6I	CTCTTC	1 cut(s)	201
BstACI	GRCGYC	1 cut(s)	251
BstC8I	GCNNGC	1 cut(s)	180
BstDEI	CTNAG	1 cut(s)	183
BstKTI	GATC	1 cut(s)	192
BstMBI	GATC	1 cut(s)	189
BstMWI	GCNNNNNNNGC	1 cut(s)	107
BstNI	CCWGG	1 cut(s)	70
BstSCI	CCNGG	1 cut(s)	68
BstV1I	GCAGC	1 cut(s)	85
BstV2I	GAAGAC	2 cut(s)	11, 35
BtsIMutI	CAGTG	2 cut(s)	101, 158
Cac8I	GCNNGC	1 cut(s)	180
CciI	TCATGA	1 cut(s)	216
Cfr13I	GGNCC	1 cut(s)	66
CviAII	CATG	2 cut(s)	200, 217
CviJI	RGCY	7 cut(s)	20, 56, 98, 110, 151, 212, 222
CviKI_1	RGCY	7 cut(s)	20, 56, 98, 110, 151, 212, 222
DdeI	CTNAG	1 cut(s)	183
DpnI	GATC	1 cut(s)	191
DpnII	GATC	1 cut(s)	189
Eam1104I	CTCTTC	1 cut(s)	201
EarI	CTCTTC	1 cut(s)	201
Eco47I	GGWCC	1 cut(s)	66
Eco57I	CTGAAG	1 cut(s)	23
EcoO109I	RGGNCCY	1 cut(s)	66
EcoRII	CCWGG	1 cut(s)	68
FaeI	CATG	2 cut(s)	203, 220
FaiI	YATR	5 cut(s)	12, 141, 156, 201, 218
FatI	CATG	2 cut(s)	199, 216
Fnu4HI	GCNGC	2 cut(s)	99, 245
Fsp4HI	GCNGC	2 cut(s)	99, 245
GluI	GCNGC	2 cut(s)	99, 245
Hin1I	GRCGYC	1 cut(s)	251
Hin1II	CATG	2 cut(s)	203, 220
HincII	GTYRAC	1 cut(s)	238
HindII	GTYRAC	1 cut(s)	238
Hpy166II	GTNNAC	1 cut(s)	238
Hpy188III	TCNNGA	1 cut(s)	217
Hpy8I	GTNNAC	1 cut(s)	238
HpyCH4IV	ACGT	1 cut(s)	251
HpyCH4V	TGCA	1 cut(s)	101
HpyF10VI	GCNNNNNNNGC	1 cut(s)	107
HpyF3I	CTNAG	1 cut(s)	183
HpySE526I	ACGT	1 cut(s)	251
Hsp92I	GRCGYC	1 cut(s)	251
Hsp92II	CATG	2 cut(s)	203, 220
Kzo9I	GATC	1 cut(s)	189
LpnPI	CCDG	3 cut(s)	55, 82, 226
Lsp1109I	GCAGC	1 cut(s)	85
MaeII	ACGT	1 cut(s)	251
MalI	GATC	1 cut(s)	191
MboI	GATC	1 cut(s)	189
MboII	GAAGA	3 cut(s)	16, 35, 218
MnlI	CCTC	4 cut(s)	10, 82, 129, 202
MroXI	GAANNNNTTC	1 cut(s)	122
MseI	TTAA	1 cut(s)	50
MspR9I	CCNGG	1 cut(s)	70
MvaI	CCWGG	1 cut(s)	70
MwoI	GCNNNNNNNGC	1 cut(s)	107
NdeII	GATC	1 cut(s)	189
NlaIII	CATG	2 cut(s)	203, 220
PagI	TCATGA	1 cut(s)	216
PdmI	GAANNNNTTC	1 cut(s)	122
PkrI	GCNGC	2 cut(s)	100, 246
PpuMI	RGGWCCY	1 cut(s)	66
Psp5II	RGGWCCY	1 cut(s)	66
Psp6I	CCWGG	1 cut(s)	68
PspGI	CCWGG	1 cut(s)	68
PspPI	GGNCC	1 cut(s)	66
PspPPI	RGGWCCY	1 cut(s)	66
SaqAI	TTAA	1 cut(s)	50
SatI	GCNGC	2 cut(s)	99, 245
Sau3AI	GATC	1 cut(s)	189
Sau96I	GGNCC	1 cut(s)	66
ScrFI	CCNGG	1 cut(s)	70
SetI	ASST	5 cut(s)	71, 100, 112, 224, 254
SgeI	CNNG	9 cut(s)	47, 75, 81, 82, 140, 191, 212, 229, 253
SinI	GGWCC	1 cut(s)	66
SmlI	CTYRAG	1 cut(s)	61
SmoI	CTYRAG	1 cut(s)	61
SsiI	CCGC	1 cut(s)	244
StyD4I	CCNGG	1 cut(s)	68
TaiI	ACGT	1 cut(s)	254
TauI	GCSGC	1 cut(s)	247
Tru1I	TTAA	1 cut(s)	50
Tru9I	TTAA	1 cut(s)	50
TscAI	CASTG	2 cut(s)	108, 165
TseI	GCWGC	1 cut(s)	98
TspDTI	ATGAA	3 cut(s)	186, 205, 219
TspRI	CASTG	2 cut(s)	108, 165
VpaK11BI	GGWCC	1 cut(s)	66
XmnI	GAANNNNTTC	1 cut(s)	122
ZraI	GACGTC	1 cut(s)	252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.