Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0016304

Physical Location & Seq

Genomic Coordinates Forward (+)

42644170 .. 42661311

Gene Structure 17142 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG328300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGAATGCTACCTTGGTTGGATTGCATTCTAACAAATTGGAATCACCCGAGCTGAAGACCCATATTGAGGCTTTGACAGAAATACGGCTTAGGAGTACCCATTCCCATTGTTCTTTTTACAGGGCTAACTCAAGGACCTGGAAACAAAATCTTTTTGAGGAGAGAGCTGCACTGAAAGCTAAACAGAAGCGTTTCCAAGAAGAGAGGCATAACTTTAGGCTTTATACACTGAAAAATAATGAAGTGCTTGCTAAGGAGATCACAGAGCATGATGAAGAGGCTTTCATGAGCTTTGATGTGTTTGTTGACAGGCGGCAGACGTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

108

Amino Acids

12.88

Weight (kDa)

8.82

Isoelectric Point (pI)

68.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016304)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g11882 FvH4_6g30062
rosa_chinensis	RchiOBHm_Chr2g0117601 RchiOBHm_Chr2g0126381 RchiOBHm_Chr2g0131431
rosa_multiflora	Rmu_sc0006695.1_g000083 Rmu_sc0038051.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056080 Rroxscaffold_3G00246990
rosa_samantha	Rh2BG328300 Rh5BG101500 Rh6AG125000 Rh6CG200400
rosa_wichuraiana	Rw0G009450 Rw2G022640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	323
AciI	CCGC	1 cut(s)	313
AcuI	CTGAAG	1 cut(s)	74
AcyI	GRCGYC	1 cut(s)	320
AfaI	GTAC	1 cut(s)	97
AfiI	CCNNNNNNNGG	1 cut(s)	67
AjnI	CCWGG	1 cut(s)	137
AjuI	GAANNNNNNNTTGG	1 cut(s)	28
AluBI	AGCT	4 cut(s)	52, 167, 179, 291
AluI	AGCT	4 cut(s)	52, 167, 179, 291
Ama87I	CYCGRG	1 cut(s)	47
ApeKI	GCWGC	1 cut(s)	167
Asp700I	GAANNNNTTC	1 cut(s)	191
AspS9I	GGNCC	1 cut(s)	135
AsuHPI	GGTGA	1 cut(s)	36
AvaI	CYCGRG	1 cut(s)	47
AvaII	GGWCC	1 cut(s)	135
BbsI	GAAGAC	1 cut(s)	62
BbvI	GCAGC	1 cut(s)	154
BceAI	ACGGC	1 cut(s)	101
BciT130I	CCWGG	1 cut(s)	139
BisI	GCNGC	2 cut(s)	168, 314
BlsI	GCNGC	2 cut(s)	169, 315
Bme1390I	CCNGG	1 cut(s)	139
Bme18I	GGWCC	1 cut(s)	135
BmeT110I	CYCGRG	1 cut(s)	47
BmgT120I	GGNCC	1 cut(s)	135
BmrFI	CCNGG	1 cut(s)	139
BpiI	GAAGAC	1 cut(s)	62
Bpu10I	CCTNAGC	2 cut(s)	89, 252
BpuEI	CTTGAG	1 cut(s)	115
BsaHI	GRCGYC	1 cut(s)	320
BsaJI	CCNNGG	1 cut(s)	12
Bsc4I	CCNNNNNNNGG	1 cut(s)	67
BseBI	CCWGG	1 cut(s)	139
BseDI	CCNNGG	1 cut(s)	12
BseLI	CCNNNNNNNGG	1 cut(s)	67
BseRI	GAGGAG	1 cut(s)	173
BseXI	GCAGC	1 cut(s)	154
BsgI	GTGCAG	1 cut(s)	153
BsiHKCI	CYCGRG	1 cut(s)	47
BslI	CCNNNNNNNGG	1 cut(s)	67
BsmI	GAATGC	2 cut(s)	10, 25
BsoBI	CYCGRG	1 cut(s)	47
Bsp143I	GATC	1 cut(s)	258
BspACI	CCGC	1 cut(s)	313
BspHI	TCATGA	1 cut(s)	285
BssECI	CCNNGG	1 cut(s)	12
BssMI	GATC	1 cut(s)	258
BssNI	GRCGYC	1 cut(s)	320
BssT1I	CCWWGG	1 cut(s)	12
Bst2UI	CCWGG	1 cut(s)	139
Bst6I	CTCTTC	2 cut(s)	195, 270
BstACI	GRCGYC	1 cut(s)	320
BstC8I	GCNNGC	1 cut(s)	249
BstDEI	CTNAG	2 cut(s)	89, 252
BstKTI	GATC	1 cut(s)	261
BstMBI	GATC	1 cut(s)	258
BstMWI	GCNNNNNNNGC	1 cut(s)	176
BstNI	CCWGG	1 cut(s)	139
BstSCI	CCNGG	1 cut(s)	137
BstV1I	GCAGC	1 cut(s)	154
BstV2I	GAAGAC	1 cut(s)	62
BtsIMutI	CAGTG	2 cut(s)	170, 227
Cac8I	GCNNGC	1 cut(s)	249
CciI	TCATGA	1 cut(s)	285
Cfr13I	GGNCC	1 cut(s)	135
Csp6I	GTAC	1 cut(s)	96
CviAII	CATG	2 cut(s)	269, 286
CviJI	RGCY	9 cut(s)	52, 71, 88, 125, 167, 179, 220, 281, 291
CviKI_1	RGCY	9 cut(s)	52, 71, 88, 125, 167, 179, 220, 281, 291
CviQI	GTAC	1 cut(s)	96
DdeI	CTNAG	2 cut(s)	89, 252
DpnI	GATC	1 cut(s)	260
DpnII	GATC	1 cut(s)	258
Eam1104I	CTCTTC	2 cut(s)	195, 270
EarI	CTCTTC	2 cut(s)	195, 270
Eco130I	CCWWGG	1 cut(s)	12
Eco47I	GGWCC	1 cut(s)	135
Eco57I	CTGAAG	1 cut(s)	74
Eco88I	CYCGRG	1 cut(s)	47
EcoO109I	RGGNCCY	1 cut(s)	135
EcoRII	CCWGG	1 cut(s)	137
EcoT14I	CCWWGG	1 cut(s)	12
ErhI	CCWWGG	1 cut(s)	12
FaeI	CATG	2 cut(s)	272, 289
FaiI	YATR	5 cut(s)	63, 210, 225, 270, 287
FatI	CATG	2 cut(s)	268, 285
Fnu4HI	GCNGC	2 cut(s)	168, 314
Fsp4HI	GCNGC	2 cut(s)	168, 314
GluI	GCNGC	2 cut(s)	168, 314
Hin1I	GRCGYC	1 cut(s)	320
Hin1II	CATG	2 cut(s)	272, 289
HincII	GTYRAC	1 cut(s)	307
HindII	GTYRAC	1 cut(s)	307
HinfI	GANTC	1 cut(s)	41
HphI	GGTGA	1 cut(s)	36
Hpy166II	GTNNAC	1 cut(s)	307
Hpy188III	TCNNGA	1 cut(s)	286
Hpy8I	GTNNAC	1 cut(s)	307
HpyCH4IV	ACGT	1 cut(s)	320
HpyCH4V	TGCA	2 cut(s)	25, 170
HpyF10VI	GCNNNNNNNGC	1 cut(s)	176
HpyF3I	CTNAG	2 cut(s)	89, 252
HpySE526I	ACGT	1 cut(s)	320
Hsp92I	GRCGYC	1 cut(s)	320
Hsp92II	CATG	2 cut(s)	272, 289
Kzo9I	GATC	1 cut(s)	258
LpnPI	CCDG	4 cut(s)	106, 124, 151, 295
Lsp1109I	GCAGC	1 cut(s)	154
MaeII	ACGT	1 cut(s)	320
MalI	GATC	1 cut(s)	260
MboI	GATC	1 cut(s)	258
MboII	GAAGA	3 cut(s)	67, 212, 287
MluCI	AATT	1 cut(s)	35
MnlI	CCTC	4 cut(s)	61, 151, 198, 271
MroXI	GAANNNNTTC	1 cut(s)	191
MspR9I	CCNGG	1 cut(s)	139
Mva1269I	GAATGC	2 cut(s)	10, 25
MvaI	CCWGG	1 cut(s)	139
MwoI	GCNNNNNNNGC	1 cut(s)	176
NdeII	GATC	1 cut(s)	258
NlaIII	CATG	2 cut(s)	272, 289
PagI	TCATGA	1 cut(s)	285
PctI	GAATGC	2 cut(s)	10, 25
PdmI	GAANNNNTTC	1 cut(s)	191
PfeI	GAWTC	1 cut(s)	41
PkrI	GCNGC	2 cut(s)	169, 315
PpuMI	RGGWCCY	1 cut(s)	135
Psp5II	RGGWCCY	1 cut(s)	135
Psp6I	CCWGG	1 cut(s)	137
PspGI	CCWGG	1 cut(s)	137
PspPI	GGNCC	1 cut(s)	135
PspPPI	RGGWCCY	1 cut(s)	135
RsaI	GTAC	1 cut(s)	97
RsaNI	GTAC	1 cut(s)	96
SatI	GCNGC	2 cut(s)	168, 314
Sau3AI	GATC	1 cut(s)	258
Sau96I	GGNCC	1 cut(s)	135
ScrFI	CCNGG	1 cut(s)	139
SetI	ASST	7 cut(s)	14, 54, 140, 169, 181, 293, 323
SinI	GGWCC	1 cut(s)	135
SmlI	CTYRAG	1 cut(s)	130
SmoI	CTYRAG	1 cut(s)	130
Sse9I	AATT	1 cut(s)	35
SsiI	CCGC	1 cut(s)	313
StyD4I	CCNGG	1 cut(s)	137
StyI	CCWWGG	1 cut(s)	12
TaiI	ACGT	1 cut(s)	323
TasI	AATT	1 cut(s)	35
TauI	GCSGC	1 cut(s)	316
TfiI	GAWTC	1 cut(s)	41
TscAI	CASTG	2 cut(s)	177, 234
TseI	GCWGC	1 cut(s)	167
TspDTI	ATGAA	4 cut(s)	17, 255, 274, 288
TspRI	CASTG	2 cut(s)	177, 234
VpaK11BI	GGWCC	1 cut(s)	135
XmnI	GAANNNNTTC	1 cut(s)	191
ZraI	GACGTC	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.