Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006695.1

Orthogroup ID

OG0016304

Physical Location & Seq

Genomic Coordinates Forward (+)

343513 .. 344381

Gene Structure 869 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006695.1_g000083.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

atggtggctgcggtgagtccaccttggtggtcggagatcgatgacggaggaaagagtcttccagatccagtttctctctcctccatctctctctatggaaaggagaccttggttggattgcattctaacaaattggaatcacccgagctgaagacccatattgaggctttgacagaaatacgggttggtcttcttttaagggctaactcaaggacctggaaacaaaatctttttgaggagagagctgcactgaaagctaaacagaagcgtttccaagaacagaggcataactttaggctttatacactgaaaaataatgaagtgcttgctaaggagatcacagagcatgatgaagaggctttcatgagctttgatgtgtttgttgacaggcggcagacgtcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

134

Amino Acids

15.44

Weight (kDa)

6.43

Isoelectric Point (pI)

60.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016304)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g11882 FvH4_6g30062
rosa_chinensis	RchiOBHm_Chr2g0117601 RchiOBHm_Chr2g0126381 RchiOBHm_Chr2g0131431
rosa_multiflora	Rmu_sc0006695.1_g000083 Rmu_sc0038051.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056080 Rroxscaffold_3G00246990
rosa_samantha	Rh2BG328300 Rh5BG101500 Rh6AG125000 Rh6CG200400
rosa_wichuraiana	Rw0G009450 Rw2G022640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	401
AciI	CCGC	2 cut(s)	11, 391
AclWI	GGATC	1 cut(s)	59
AcuI	CTGAAG	1 cut(s)	170
AcyI	GRCGYC	1 cut(s)	398
AfiI	CCNNNNNNNGG	1 cut(s)	163
AjnI	CCWGG	1 cut(s)	215
AjuI	GAANNNNNNNTTGG	2 cut(s)	168, 200
AleI	CACNNNNGTG	1 cut(s)	25
AluBI	AGCT	4 cut(s)	148, 245, 257, 369
AluI	AGCT	4 cut(s)	148, 245, 257, 369
Alw26I	GTCTC	1 cut(s)	98
AlwI	GGATC	1 cut(s)	59
Ama87I	CYCGRG	1 cut(s)	143
ApeKI	GCWGC	2 cut(s)	8, 245
Asp700I	GAANNNNTTC	1 cut(s)	269
AspS9I	GGNCC	1 cut(s)	213
AsuHPI	GGTGA	2 cut(s)	25, 132
AvaI	CYCGRG	1 cut(s)	143
AvaII	GGWCC	1 cut(s)	213
BbsI	GAAGAC	3 cut(s)	50, 158, 182
BbvI	GCAGC	1 cut(s)	232
BccI	CCATC	1 cut(s)	92
BciT130I	CCWGG	1 cut(s)	217
BcoDI	GTCTC	1 cut(s)	98
BisI	GCNGC	3 cut(s)	9, 246, 392
BlsI	GCNGC	3 cut(s)	10, 247, 393
Bme1390I	CCNGG	1 cut(s)	217
Bme18I	GGWCC	1 cut(s)	213
BmeT110I	CYCGRG	1 cut(s)	143
BmgT120I	GGNCC	1 cut(s)	213
BmrFI	CCNGG	1 cut(s)	217
BpiI	GAAGAC	3 cut(s)	50, 158, 182
Bpu10I	CCTNAGC	1 cut(s)	330
BpuEI	CTTGAG	1 cut(s)	193
Bsa29I	ATCGAT	1 cut(s)	39
BsaHI	GRCGYC	1 cut(s)	398
BsaI	GGTCTC	1 cut(s)	98
BsaJI	CCNNGG	2 cut(s)	23, 108
Bsc4I	CCNNNNNNNGG	1 cut(s)	163
Bse1I	ACTGG	1 cut(s)	68
BseBI	CCWGG	1 cut(s)	217
BseCI	ATCGAT	1 cut(s)	39
BseDI	CCNNGG	2 cut(s)	23, 108
BseLI	CCNNNNNNNGG	1 cut(s)	163
BseNI	ACTGG	1 cut(s)	68
BseRI	GAGGAG	2 cut(s)	70, 251
BseXI	GCAGC	1 cut(s)	232
BsgI	GTGCAG	1 cut(s)	231
BshVI	ATCGAT	1 cut(s)	39
BsiHKCI	CYCGRG	1 cut(s)	143
BslI	CCNNNNNNNGG	1 cut(s)	163
BsmAI	GTCTC	1 cut(s)	98
BsmI	GAATGC	1 cut(s)	121
Bso31I	GGTCTC	1 cut(s)	98
BsoBI	CYCGRG	1 cut(s)	143
Bsp143I	GATC	3 cut(s)	36, 64, 336
BspACI	CCGC	2 cut(s)	11, 391
BspDI	ATCGAT	1 cut(s)	39
BspHI	TCATGA	1 cut(s)	363
BspPI	GGATC	1 cut(s)	59
BspTNI	GGTCTC	1 cut(s)	98
BsrI	ACTGG	1 cut(s)	68
BssECI	CCNNGG	2 cut(s)	23, 108
BssMI	GATC	3 cut(s)	36, 64, 336
BssNI	GRCGYC	1 cut(s)	398
BssT1I	CCWWGG	2 cut(s)	23, 108
Bst2UI	CCWGG	1 cut(s)	217
Bst6I	CTCTTC	1 cut(s)	348
BstACI	GRCGYC	1 cut(s)	398
BstC8I	GCNNGC	1 cut(s)	327
BstDEI	CTNAG	1 cut(s)	330
BstKTI	GATC	3 cut(s)	39, 67, 339
BstMAI	GTCTC	1 cut(s)	98
BstMBI	GATC	3 cut(s)	36, 64, 336
BstMWI	GCNNNNNNNGC	1 cut(s)	254
BstNI	CCWGG	1 cut(s)	217
BstSCI	CCNGG	1 cut(s)	215
BstV1I	GCAGC	1 cut(s)	232
BstV2I	GAAGAC	3 cut(s)	50, 158, 182
BstX2I	RGATCY	1 cut(s)	64
BstXI	CCANNNNNNTGG	1 cut(s)	27
BstYI	RGATCY	1 cut(s)	64
Bsu15I	ATCGAT	1 cut(s)	39
BsuTUI	ATCGAT	1 cut(s)	39
BtsIMutI	CAGTG	2 cut(s)	248, 305
Cac8I	GCNNGC	1 cut(s)	327
CciI	TCATGA	1 cut(s)	363
Cfr13I	GGNCC	1 cut(s)	213
ClaI	ATCGAT	1 cut(s)	39
CviAII	CATG	2 cut(s)	347, 364
CviJI	RGCY	9 cut(s)	8, 148, 167, 203, 245, 257, 298, 359, 369
CviKI_1	RGCY	9 cut(s)	8, 148, 167, 203, 245, 257, 298, 359, 369
DdeI	CTNAG	1 cut(s)	330
DpnI	GATC	3 cut(s)	38, 66, 338
DpnII	GATC	3 cut(s)	36, 64, 336
Eam1104I	CTCTTC	1 cut(s)	348
EarI	CTCTTC	1 cut(s)	348
Eco130I	CCWWGG	2 cut(s)	23, 108
Eco31I	GGTCTC	1 cut(s)	98
Eco47I	GGWCC	1 cut(s)	213
Eco57I	CTGAAG	1 cut(s)	170
Eco88I	CYCGRG	1 cut(s)	143
EcoO109I	RGGNCCY	1 cut(s)	213
EcoRII	CCWGG	1 cut(s)	215
EcoT14I	CCWWGG	2 cut(s)	23, 108
ErhI	CCWWGG	2 cut(s)	23, 108
FaeI	CATG	2 cut(s)	350, 367
FaiI	YATR	6 cut(s)	96, 159, 288, 303, 348, 365
FalI	AAGNNNNNCTT	2 cut(s)	92, 124
FatI	CATG	2 cut(s)	346, 363
Fnu4HI	GCNGC	3 cut(s)	9, 246, 392
Fsp4HI	GCNGC	3 cut(s)	9, 246, 392
GluI	GCNGC	3 cut(s)	9, 246, 392
Hin1I	GRCGYC	1 cut(s)	398
Hin1II	CATG	2 cut(s)	350, 367
HincII	GTYRAC	1 cut(s)	385
HindII	GTYRAC	1 cut(s)	385
HinfI	GANTC	3 cut(s)	16, 55, 137
HphI	GGTGA	2 cut(s)	25, 132
Hpy166II	GTNNAC	2 cut(s)	20, 385
Hpy188I	TCNGA	1 cut(s)	34
Hpy188III	TCNNGA	2 cut(s)	62, 364
Hpy8I	GTNNAC	2 cut(s)	20, 385
HpyCH4IV	ACGT	1 cut(s)	398
HpyCH4V	TGCA	2 cut(s)	121, 248
HpyF10VI	GCNNNNNNNGC	1 cut(s)	254
HpyF3I	CTNAG	1 cut(s)	330
HpySE526I	ACGT	1 cut(s)	398
Hsp92I	GRCGYC	1 cut(s)	398
Hsp92II	CATG	2 cut(s)	350, 367
Kzo9I	GATC	3 cut(s)	36, 64, 336
LpnPI	CCDG	5 cut(s)	75, 81, 202, 229, 373
Lsp1109I	GCAGC	1 cut(s)	232
MaeII	ACGT	1 cut(s)	398
MalI	GATC	3 cut(s)	38, 66, 338
MboI	GATC	3 cut(s)	36, 64, 336
MboII	GAAGA	4 cut(s)	50, 163, 182, 365
MflI	RGATCY	1 cut(s)	64
MluCI	AATT	1 cut(s)	131
MlyI	GAGTC	2 cut(s)	25, 64
MmeI	TCCRAC	2 cut(s)	12, 94
MnlI	CCTC	6 cut(s)	41, 91, 157, 229, 276, 349
MroXI	GAANNNNTTC	1 cut(s)	269
MseI	TTAA	1 cut(s)	197
MslI	CAYNNNNRTG	1 cut(s)	25
MspR9I	CCNGG	1 cut(s)	217
Mva1269I	GAATGC	1 cut(s)	121
MvaI	CCWGG	1 cut(s)	217
MwoI	GCNNNNNNNGC	1 cut(s)	254
NdeII	GATC	3 cut(s)	36, 64, 336
NlaIII	CATG	2 cut(s)	350, 367
OliI	CACNNNNGTG	1 cut(s)	25
PagI	TCATGA	1 cut(s)	363
PctI	GAATGC	1 cut(s)	121
PdmI	GAANNNNTTC	1 cut(s)	269
PfeI	GAWTC	1 cut(s)	137
PkrI	GCNGC	3 cut(s)	10, 247, 393
PleI	GAGTC	2 cut(s)	24, 63
PpsI	GAGTC	2 cut(s)	24, 63
PpuMI	RGGWCCY	1 cut(s)	213
Psp5II	RGGWCCY	1 cut(s)	213
Psp6I	CCWGG	1 cut(s)	215
PspGI	CCWGG	1 cut(s)	215
PspPI	GGNCC	1 cut(s)	213
PspPPI	RGGWCCY	1 cut(s)	213
PsuI	RGATCY	1 cut(s)	64
RseI	CAYNNNNRTG	1 cut(s)	25
SaqAI	TTAA	1 cut(s)	197
SatI	GCNGC	3 cut(s)	9, 246, 392
Sau3AI	GATC	3 cut(s)	36, 64, 336
Sau96I	GGNCC	1 cut(s)	213
SchI	GAGTC	2 cut(s)	25, 64
ScrFI	CCNGG	1 cut(s)	217
SetI	ASST	8 cut(s)	25, 110, 150, 218, 247, 259, 371, 401
SinI	GGWCC	1 cut(s)	213
SmiMI	CAYNNNNRTG	1 cut(s)	25
SmlI	CTYRAG	1 cut(s)	208
SmoI	CTYRAG	1 cut(s)	208
Sse9I	AATT	1 cut(s)	131
SsiI	CCGC	2 cut(s)	11, 391
StyD4I	CCNGG	1 cut(s)	215
StyI	CCWWGG	2 cut(s)	23, 108
TaiI	ACGT	1 cut(s)	401
TaqI	TCGA	1 cut(s)	39
TasI	AATT	1 cut(s)	131
TauI	GCSGC	1 cut(s)	394
TfiI	GAWTC	1 cut(s)	137
Tru1I	TTAA	1 cut(s)	197
Tru9I	TTAA	1 cut(s)	197
TscAI	CASTG	2 cut(s)	255, 312
TseI	GCWGC	2 cut(s)	8, 245
TspDTI	ATGAA	3 cut(s)	333, 352, 366
TspGWI	ACGGA	1 cut(s)	60
TspRI	CASTG	2 cut(s)	255, 312
VpaK11BI	GGWCC	1 cut(s)	213
XmnI	GAANNNNTTC	1 cut(s)	269
ZraI	GACGTC	1 cut(s)	399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.