Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0016304

Physical Location & Seq

Genomic Coordinates Reverse (-)

9275869 .. 9284867

Gene Structure 8999 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG101500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGCATATAACTAGGCTAATTCCACGAACCGGCTGTCTACTTCCTTTCCAAGCAAGCAAGGCCAATACCTTGGTTGGATTGCATTCTAACAAATTGGAATCACCCGAGCTGAAGACCCGCATTGCGGCTTTGACAGAAATACAGGGCCAACTCAAGAAGCGTTTGCAAGAAGAGAGGCATAACTTTAGGCTTTATACACTGAAAAATAATGAAGTGCTTGCTAAGGAGATCACAGAGCATGATGAAGAGTCTTTCATGAGCTTTGATGTGTTTGTTGACAGGCCGCAGACGTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

98

Amino Acids

11.35

Weight (kDa)

7.94

Isoelectric Point (pI)

63.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016304)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g11882 FvH4_6g30062
rosa_chinensis	RchiOBHm_Chr2g0117601 RchiOBHm_Chr2g0126381 RchiOBHm_Chr2g0131431
rosa_multiflora	Rmu_sc0006695.1_g000083 Rmu_sc0038051.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056080 Rroxscaffold_3G00246990
rosa_samantha	Rh2BG328300 Rh5BG101500 Rh6AG125000 Rh6CG200400
rosa_wichuraiana	Rw0G009450 Rw2G022640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	293
AccI	GTMKAC	1 cut(s)	37
AciI	CCGC	3 cut(s)	118, 125, 284
AcuI	CTGAAG	1 cut(s)	131
AcyI	GRCGYC	1 cut(s)	290
AfiI	CCNNNNNNNGG	2 cut(s)	29, 124
AluBI	AGCT	2 cut(s)	109, 261
AluI	AGCT	2 cut(s)	109, 261
Ama87I	CYCGRG	1 cut(s)	104
AoxI	GGCC	3 cut(s)	60, 145, 281
ArsI	GACNNNNNNTTYG	2 cut(s)	19, 51
AspS9I	GGNCC	1 cut(s)	145
AsuHPI	GGTGA	1 cut(s)	93
AvaI	CYCGRG	1 cut(s)	104
BbsI	GAAGAC	1 cut(s)	119
BfaI	CTAG	1 cut(s)	12
BisI	GCNGC	2 cut(s)	126, 284
BlsI	GCNGC	2 cut(s)	127, 285
BmeT110I	CYCGRG	1 cut(s)	104
BmgT120I	GGNCC	1 cut(s)	145
BpiI	GAAGAC	1 cut(s)	119
Bpu10I	CCTNAGC	1 cut(s)	222
BpuEI	CTTGAG	1 cut(s)	137
BsaHI	GRCGYC	1 cut(s)	290
BsaJI	CCNNGG	1 cut(s)	69
Bsc4I	CCNNNNNNNGG	2 cut(s)	29, 124
Bse118I	RCCGGY	1 cut(s)	29
Bse3DI	GCAATG	1 cut(s)	120
BseDI	CCNNGG	1 cut(s)	69
BseLI	CCNNNNNNNGG	2 cut(s)	29, 124
BseMI	GCAATG	1 cut(s)	120
BshFI	GGCC	3 cut(s)	62, 147, 283
BsiHKCI	CYCGRG	1 cut(s)	104
BsiSI	CCGG	1 cut(s)	30
BslI	CCNNNNNNNGG	2 cut(s)	29, 124
BsmI	GAATGC	1 cut(s)	82
BsnI	GGCC	3 cut(s)	62, 147, 283
BsoBI	CYCGRG	1 cut(s)	104
Bsp143I	GATC	1 cut(s)	228
BspACI	CCGC	3 cut(s)	118, 125, 284
BspANI	GGCC	3 cut(s)	62, 147, 283
BspHI	TCATGA	1 cut(s)	255
BsrDI	GCAATG	1 cut(s)	120
BsrFI	RCCGGY	1 cut(s)	29
BssAI	RCCGGY	1 cut(s)	29
BssECI	CCNNGG	1 cut(s)	69
BssMI	GATC	1 cut(s)	228
BssNI	GRCGYC	1 cut(s)	290
BssT1I	CCWWGG	1 cut(s)	69
Bst6I	CTCTTC	2 cut(s)	165, 240
BstACI	GRCGYC	1 cut(s)	290
BstC8I	GCNNGC	2 cut(s)	55, 219
BstDEI	CTNAG	1 cut(s)	222
BstKTI	GATC	1 cut(s)	231
BstMBI	GATC	1 cut(s)	228
BstMWI	GCNNNNNNNGC	1 cut(s)	59
BstV2I	GAAGAC	1 cut(s)	119
BstXI	CCANNNNNNTGG	1 cut(s)	70
BsuRI	GGCC	3 cut(s)	62, 147, 283
BtsIMutI	CAGTG	1 cut(s)	197
Cac8I	GCNNGC	2 cut(s)	55, 219
CciI	TCATGA	1 cut(s)	255
Cfr10I	RCCGGY	1 cut(s)	29
Cfr13I	GGNCC	1 cut(s)	145
CviAII	CATG	2 cut(s)	239, 256
CviJI	RGCY	9 cut(s)	16, 33, 62, 109, 128, 147, 190, 261, 283
CviKI_1	RGCY	9 cut(s)	16, 33, 62, 109, 128, 147, 190, 261, 283
DdeI	CTNAG	1 cut(s)	222
DpnI	GATC	1 cut(s)	230
DpnII	GATC	1 cut(s)	228
Eam1104I	CTCTTC	2 cut(s)	165, 240
EarI	CTCTTC	2 cut(s)	165, 240
Eco130I	CCWWGG	1 cut(s)	69
Eco57I	CTGAAG	1 cut(s)	131
Eco88I	CYCGRG	1 cut(s)	104
EcoT14I	CCWWGG	1 cut(s)	69
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	69
FaeI	CATG	2 cut(s)	242, 259
FaiI	YATR	6 cut(s)	6, 8, 180, 195, 240, 257
FatI	CATG	2 cut(s)	238, 255
FauI	CCCGC	1 cut(s)	125
FblI	GTMKAC	1 cut(s)	37
Fnu4HI	GCNGC	2 cut(s)	126, 284
Fsp4HI	GCNGC	2 cut(s)	126, 284
FspBI	CTAG	1 cut(s)	12
GluI	GCNGC	2 cut(s)	126, 284
HaeIII	GGCC	3 cut(s)	62, 147, 283
HapII	CCGG	1 cut(s)	30
Hin1I	GRCGYC	1 cut(s)	290
Hin1II	CATG	2 cut(s)	242, 259
HincII	GTYRAC	1 cut(s)	277
HindII	GTYRAC	1 cut(s)	277
HinfI	GANTC	2 cut(s)	98, 248
HpaII	CCGG	1 cut(s)	30
HphI	GGTGA	1 cut(s)	93
Hpy166II	GTNNAC	2 cut(s)	38, 277
Hpy188III	TCNNGA	2 cut(s)	154, 256
Hpy8I	GTNNAC	2 cut(s)	38, 277
HpyCH4IV	ACGT	1 cut(s)	290
HpyCH4V	TGCA	3 cut(s)	4, 82, 166
HpyF10VI	GCNNNNNNNGC	1 cut(s)	59
HpyF3I	CTNAG	1 cut(s)	222
HpySE526I	ACGT	1 cut(s)	290
Hsp92I	GRCGYC	1 cut(s)	290
Hsp92II	CATG	2 cut(s)	242, 259
Kzo9I	GATC	1 cut(s)	228
LpnPI	CCDG	3 cut(s)	43, 128, 265
MaeI	CTAG	1 cut(s)	12
MaeII	ACGT	1 cut(s)	290
MalI	GATC	1 cut(s)	230
MboI	GATC	1 cut(s)	228
MboII	GAAGA	3 cut(s)	124, 182, 257
MluCI	AATT	2 cut(s)	18, 92
MlyI	GAGTC	1 cut(s)	257
MmeI	TCCRAC	1 cut(s)	55
MnlI	CCTC	1 cut(s)	168
Mph1103I	ATGCAT	1 cut(s)	6
MspI	CCGG	1 cut(s)	30
Mva1269I	GAATGC	1 cut(s)	82
MwoI	GCNNNNNNNGC	1 cut(s)	59
NdeII	GATC	1 cut(s)	228
NlaIII	CATG	2 cut(s)	242, 259
NsiI	ATGCAT	1 cut(s)	6
PagI	TCATGA	1 cut(s)	255
PctI	GAATGC	1 cut(s)	82
PfeI	GAWTC	1 cut(s)	98
PkrI	GCNGC	2 cut(s)	127, 285
PleI	GAGTC	1 cut(s)	256
PpsI	GAGTC	1 cut(s)	256
PspPI	GGNCC	1 cut(s)	145
SatI	GCNGC	2 cut(s)	126, 284
Sau3AI	GATC	1 cut(s)	228
Sau96I	GGNCC	1 cut(s)	145
SchI	GAGTC	1 cut(s)	257
SetI	ASST	4 cut(s)	71, 111, 263, 293
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
Sse9I	AATT	2 cut(s)	18, 92
SsiI	CCGC	3 cut(s)	118, 125, 284
SspMI	CTAG	1 cut(s)	12
StyI	CCWWGG	1 cut(s)	69
TaiI	ACGT	1 cut(s)	293
TasI	AATT	2 cut(s)	18, 92
TauI	GCSGC	2 cut(s)	128, 286
TfiI	GAWTC	1 cut(s)	98
TscAI	CASTG	1 cut(s)	204
TspDTI	ATGAA	3 cut(s)	225, 244, 258
TspRI	CASTG	1 cut(s)	204
XmiI	GTMKAC	1 cut(s)	37
XspI	CTAG	1 cut(s)	12
ZraI	GACGTC	1 cut(s)	291
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.