FvH4_4g12360

WD repeat-containing protein C2A9.03-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0003717
Physical Location & Seq
Reverse (-)
16046466 .. 16051832
5367 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g12360.t6

Sequence Viewer

Length: 1326 bp
ATGGCTTTTGAGCAGCCTCATCAGTTTGAGTATATGGCAGATGAAGGTGACATGTCTGATTTTGTTGAGGATGTTGATGCGGATGCAGATGAAGAAAATCATGGTAGAGATATGGTTCTTGACGAGTACGACATGGTGTCAGATACGTCATCTGCTCAAGCACGAAAGGGAAAGGATATTCAGGGTATTCCATGGGATAGGTTAAACATAACAAGGGAAAAGTACAGATTGACGAGGCTTGAACAGTACAAGAATTATGAGAATATCCCTTTATCTGGGGAAGCTGTGGACAAGGAGTGTCAACTAACGCAGAAGGGTGGCAACTATTATGAATTCTTCCACAACACAAGATTGGTTAAACCTACAATCCTTCATTTTCAGCTCAGAAATCTGGTTTGGGCTACTTCGAAACATGACGTCTATCTCATGTCCAATTATTCAGTTATGCATTGGTCTTCTCTATCGGGCAATTTGTCTGAGGTCCTCAATTTTTCAGGACATGTTGCGCCAACTGAGAAACATGCAGGAAGTTTATTGGAGGGTTTTATGCAGACTCAGATTAGCACGCTAGCTGTCAAGGACAATTTCCTTGTTGCTGGAGGTTTCCAAGGAGAGCTTACTTGCAAGCGTCTTGATAAAGAAGGAGTGAGTTTTTGTACCCGAACCACATACGATGACAATGCCATTACAAATGCTGTTGAAATATATGATAGCCTGGGGGGTGGAATGCATTTCATGGCATCCAATAATGATTGTGGTATAAGGGAATATGACATGGAGAGATTTCAGCTTCTGAATCACTTTAGATTCCCCTGGCCAGTGAATCATACATCAATAAGCCCAGATCGTAGGCTTGTTGCCGTAGTTGGAGATCATGTGGATGGATTGCTTATGGATTCTCAGAATGGAAAGACTATTGCCAAGGTTGTTGGTCATCTAGATTACTCCTTTGCTTCTGCATGGCATCCTGATGGCCGCATATTTGCCACCGGAAATCAGGACAAGACTTCCCGAGTTTGGGATATAAGAAATCTCTCATCACCCATCGCAGTTCTGAAGAATAACTTGGGTGCTTGTCGGTCTATTCGGTTTTCATCAGATGGTCAGTTTATGATTGTTGCAGAACCTGCAGATTTTGTGCACATATATAGTACAACGGCAGATTACCAAAAACGGCAAGAGATTGATTTCTTTGGGGAGATTTCGGGAGTGTCAGCAAGTCCAGACGATGAATCCTTGTACATAGGAATCTGGGACCGTACGTACGCAAGCTTGTTGCAATATAACAGAAGGCATACATATGGATACCTTGATTCCTATTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

442

Amino Acids

50.22

Weight (kDa)

5.09

Isoelectric Point (pI)

35.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_THOC3 PF25174 242 - 412 3.8e-17 THOC3 beta-propeller domain
Beta-prop_WDR36-Utp21_2nd PF25168 243 - 383 5.8e-11 WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR5 PF25175 246 - 387 2.2e-11 WDR5 beta-propeller domain
WD40_Gbeta PF25391 247 - 379 1e-05 G protein beta WD-40 repeat protein
WD40_Prp19 PF24814 273 - 383 2.1e-13 Prp19 WD40 domain
Beta-prop_WDR3_1st PF25173 274 - 420 3.8e-06 WDR3 first beta-propeller domain
Beta-prop_EML_2 PF23414 320 - 420 1.3e-07 Echinoderm microtubule-associated protein second beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 420
Acc36I ACCTGC 1 cut(s) 1135
AciI CCGC 2 cut(s) 80, 976
AcoI YGGCCR 2 cut(s) 815, 973
AcsI RAATTY 1 cut(s) 332
AcuI CTGAAG 1 cut(s) 1076
AcyI GRCGYC 1 cut(s) 417
AfaI GTAC 8 cut(s) 128, 224, 248, 658, 1153, 1241, 1261, 1265
AfiI CCNNNNNNNGG 3 cut(s) 275, 1017, 1018
AflIII ACRYGT 2 cut(s) 51, 499
AgsI TTSAA 2 cut(s) 242, 701
AhdI GACNNNNNGTC 1 cut(s) 136
AjnI CCWGG 2 cut(s) 714, 812
AjuI GAANNNNNNNTTGG 4 cut(s) 379, 411, 1049, 1081
AluBI AGCT 6 cut(s) 284, 382, 572, 616, 790, 1272
AluI AGCT 6 cut(s) 284, 382, 572, 616, 790, 1272
Alw21I GWGCWC 1 cut(s) 1143
Alw44I GTGCAC 1 cut(s) 1139
AlwNI CAGNNNCTG 2 cut(s) 793, 1127
Ama87I CYCGRG 1 cut(s) 1011
AoxI GGCC 2 cut(s) 815, 973
ApaLI GTGCAC 1 cut(s) 1139
ApeKI GCWGC 1 cut(s) 13
ApoI RAATTY 1 cut(s) 332
AspLEI GCGC 1 cut(s) 508
AspS9I GGNCC 2 cut(s) 481, 1255
AsuHPI GGTGA 2 cut(s) 59, 1032
AsuII TTCGAA 1 cut(s) 407
AsuNHI GCTAGC 1 cut(s) 568
AvaI CYCGRG 1 cut(s) 1011
AvaII GGWCC 2 cut(s) 481, 1255
BaeGI GKGCMC 1 cut(s) 1143
BalI TGGCCA 1 cut(s) 817
BbsI GAAGAC 1 cut(s) 447
Bbv12I GWGCWC 1 cut(s) 1143
BbvI GCAGC 1 cut(s) 25
BccI CCATC 4 cut(s) 875, 965, 1052, 1094
BceAI ACGGC 3 cut(s) 845, 1173, 1190
BcgI CGANNNNNNTGC 2 cut(s) 662, 696
BciT130I CCWGG 2 cut(s) 716, 814
BciVI GTATCC 1 cut(s) 1298
BfaI CTAG 2 cut(s) 569, 938
BfmI CTRYAG 1 cut(s) 1128
BfuAI ACCTGC 1 cut(s) 1135
BfuI GTATCC 1 cut(s) 1298
BisI GCNGC 2 cut(s) 14, 976
BlsI GCNGC 2 cut(s) 15, 977
Bme1390I CCNGG 2 cut(s) 716, 814
Bme18I GGWCC 2 cut(s) 481, 1255
BmeRI GACNNNNNGTC 1 cut(s) 136
BmeT110I CYCGRG 1 cut(s) 1011
BmgT120I GGNCC 2 cut(s) 481, 1255
BmiI GGNNCC 1 cut(s) 1256
BmrFI CCNGG 2 cut(s) 716, 814
BmsI GCATC 4 cut(s) 67, 73, 749, 973
BmtI GCTAGC 1 cut(s) 572
BpiI GAAGAC 1 cut(s) 447
BpmI CTGGAG 1 cut(s) 618
Bpu14I TTCGAA 1 cut(s) 407
BpuEI CTTGAG 1 cut(s) 141
BsaAI YACGTR 1 cut(s) 1263
BsaHI GRCGYC 1 cut(s) 417
BsaJI CCNNGG 5 cut(s) 191, 607, 715, 812, 921
BsaWI WCCGGW 1 cut(s) 989
BsaXI ACNNNNNCTCC 2 cut(s) 861, 891
Bsc4I CCNNNNNNNGG 3 cut(s) 275, 1017, 1018
Bse1I ACTGG 1 cut(s) 818
BseBI CCWGG 2 cut(s) 716, 814
BseDI CCNNGG 5 cut(s) 191, 607, 715, 812, 921
BseGI GGATG 5 cut(s) 76, 88, 740, 886, 964
BseLI CCNNNNNNNGG 3 cut(s) 275, 1017, 1018
BseMII CTCAG 5 cut(s) 397, 468, 504, 569, 914
BseNI ACTGG 1 cut(s) 818
BseSI GKGCMC 1 cut(s) 1143
BseXI GCAGC 1 cut(s) 25
BshFI GGCC 2 cut(s) 817, 975
BsiHKAI GWGCWC 1 cut(s) 1143
BsiHKCI CYCGRG 1 cut(s) 1011
BsiSI CCGG 1 cut(s) 990
BsiWI CGTACG 2 cut(s) 1259, 1263
BslFI GGGAC 1 cut(s) 1268
BslI CCNNNNNNNGG 3 cut(s) 275, 1017, 1018
BsmFI GGGAC 1 cut(s) 1268
BsmI GAATGC 1 cut(s) 732
BsnI GGCC 2 cut(s) 817, 975
BsoBI CYCGRG 1 cut(s) 1011
Bsp119I TTCGAA 1 cut(s) 407
Bsp1286I GDGCHC 1 cut(s) 1143
Bsp1407I TGTACA 1 cut(s) 1239
Bsp143I GATC 2 cut(s) 844, 871
Bsp19I CCATGG 1 cut(s) 191
BspACI CCGC 2 cut(s) 80, 976
BspANI GGCC 2 cut(s) 817, 975
BspCNI CTCAG 5 cut(s) 396, 469, 505, 568, 913
BspLI GGNNCC 1 cut(s) 1256
BspMAI CTGCAG 1 cut(s) 1132
BspMI ACCTGC 1 cut(s) 1135
BspOI GCTAGC 1 cut(s) 572
BspT104I TTCGAA 1 cut(s) 407
BsrGI TGTACA 1 cut(s) 1239
BsrI ACTGG 1 cut(s) 818
BssECI CCNNGG 5 cut(s) 191, 607, 715, 812, 921
BssMI GATC 2 cut(s) 844, 871
BssNI GRCGYC 1 cut(s) 417
BssT1I CCWWGG 3 cut(s) 191, 607, 921
Bst2UI CCWGG 2 cut(s) 716, 814
Bst4CI ACNGT 2 cut(s) 246, 1259
BstACI GRCGYC 1 cut(s) 417
BstAPI GCANNNNNTGC 1 cut(s) 1127
BstAUI TGTACA 1 cut(s) 1239
BstBAI YACGTR 1 cut(s) 1263
BstBI TTCGAA 1 cut(s) 407
BstC8I GCNNGC 4 cut(s) 566, 570, 626, 1270
BstDEI CTNAG 5 cut(s) 383, 477, 513, 555, 900
BstDSI CCRYGG 1 cut(s) 191
BstF5I GGATG 5 cut(s) 76, 88, 740, 886, 964
BstHHI GCGC 1 cut(s) 508
BstKTI GATC 2 cut(s) 847, 874
BstMBI GATC 2 cut(s) 844, 871
BstMWI GCNNNNNNNGC 1 cut(s) 1127
BstNI CCWGG 2 cut(s) 716, 814
BstNSI RCATGY 3 cut(s) 55, 503, 524
BstSCI CCNGG 2 cut(s) 714, 812
BstSFI CTRYAG 1 cut(s) 1128
BstSLI GKGCMC 1 cut(s) 1143
BstSNI TACGTA 1 cut(s) 1263
BstV1I GCAGC 1 cut(s) 25
BstV2I GAAGAC 1 cut(s) 447
BsuI GTATCC 1 cut(s) 1298
BsuRI GGCC 2 cut(s) 817, 975
BtgI CCRYGG 1 cut(s) 191
BtgZI GCGATG 1 cut(s) 1030
BtsCI GGATG 5 cut(s) 76, 88, 740, 886, 964
BtsIMutI CAGTG 1 cut(s) 825
BveI ACCTGC 1 cut(s) 1135
Cac8I GCNNGC 4 cut(s) 566, 570, 626, 1270
CaiI CAGNNNCTG 2 cut(s) 793, 1127
CfoI GCGC 1 cut(s) 508
Cfr13I GGNCC 2 cut(s) 481, 1255
CseI GACGC 1 cut(s) 617
Csp6I GTAC 8 cut(s) 127, 223, 247, 657, 1152, 1240, 1260, 1264
CviQI GTAC 8 cut(s) 127, 223, 247, 657, 1152, 1240, 1260, 1264
DdeI CTNAG 5 cut(s) 383, 477, 513, 555, 900
DpnI GATC 2 cut(s) 846, 873
DpnII GATC 2 cut(s) 844, 871
DriI GACNNNNNGTC 1 cut(s) 136
EaeI YGGCCR 2 cut(s) 815, 973
Eam1105I GACNNNNNGTC 1 cut(s) 136
Eco105I TACGTA 1 cut(s) 1263
Eco130I CCWWGG 3 cut(s) 191, 607, 921
Eco47I GGWCC 2 cut(s) 481, 1255
Eco57I CTGAAG 1 cut(s) 1076
Eco88I CYCGRG 1 cut(s) 1011
EcoO109I RGGNCCY 1 cut(s) 481
EcoRI GAATTC 1 cut(s) 332
EcoRII CCWGG 2 cut(s) 714, 812
EcoT14I CCWWGG 3 cut(s) 191, 607, 921
EcoT22I ATGCAT 2 cut(s) 450, 732
ErhI CCWWGG 3 cut(s) 191, 607, 921
FalI AAGNNNNNCTT 4 cut(s) 600, 632, 1049, 1081
FaqI GGGAC 1 cut(s) 1268
FauNDI CATATG 1 cut(s) 1300
Fnu4HI GCNGC 2 cut(s) 14, 976
FokI GGATG 5 cut(s) 83, 95, 727, 893, 951
Fsp4HI GCNGC 2 cut(s) 14, 976
FspBI CTAG 2 cut(s) 569, 938
GlaI GCGC 1 cut(s) 507
GluI GCNGC 2 cut(s) 14, 976
GsuI CTGGAG 1 cut(s) 618
HaeIII GGCC 2 cut(s) 817, 975
HapII CCGG 1 cut(s) 990
HgaI GACGC 1 cut(s) 617
HhaI GCGC 1 cut(s) 508
Hin1I GRCGYC 1 cut(s) 417
Hin6I GCGC 1 cut(s) 506
HinP1I GCGC 1 cut(s) 506
HincII GTYRAC 1 cut(s) 302
HindII GTYRAC 1 cut(s) 302
HindIII AAGCTT 1 cut(s) 1270
HinfI GANTC 8 cut(s) 553, 796, 807, 823, 896, 1232, 1248, 1313
HpaII CCGG 1 cut(s) 990
HphI GGTGA 2 cut(s) 59, 1032
Hpy166II GTNNAC 3 cut(s) 289, 302, 1141
Hpy188I TCNGA 9 cut(s) 58, 142, 386, 478, 558, 795, 903, 1056, 1099
Hpy188III TCNNGA 9 cut(s) 119, 495, 632, 938, 968, 998, 1011, 1206, 1223
Hpy8I GTNNAC 3 cut(s) 289, 302, 1141
HpyAV CCTTC 5 cut(s) 38, 307, 380, 635, 1284
HpyCH4III ACNGT 2 cut(s) 246, 1259
HpyCH4IV ACGT 3 cut(s) 146, 417, 1262
HpyF10VI GCNNNNNNNGC 1 cut(s) 1127
HpyF3I CTNAG 5 cut(s) 383, 477, 513, 555, 900
HpySE526I ACGT 3 cut(s) 146, 417, 1262
Hsp92I GRCGYC 1 cut(s) 417
HspAI GCGC 1 cut(s) 506
Kzo9I GATC 2 cut(s) 844, 871
Lsp1109I GCAGC 1 cut(s) 25
LweI GCATC 4 cut(s) 67, 73, 749, 973
MaeI CTAG 2 cut(s) 569, 938
MaeII ACGT 3 cut(s) 146, 417, 1262
MaeIII GTNAC 1 cut(s) 47
MalI GATC 2 cut(s) 846, 873
MboI GATC 2 cut(s) 844, 871
MboII GAAGA 4 cut(s) 104, 328, 447, 1069
MhlI GDGCHC 1 cut(s) 1143
MlsI TGGCCA 1 cut(s) 817
MluCI AATT 6 cut(s) 253, 332, 433, 469, 487, 583
MluNI TGGCCA 1 cut(s) 817
MlyI GAGTC 1 cut(s) 547
MmeI TCCRAC 1 cut(s) 847
MnlI CCTC 7 cut(s) 27, 61, 228, 472, 494, 532, 593
Mox20I TGGCCA 1 cut(s) 817
Mph1103I ATGCAT 2 cut(s) 450, 732
MscI TGGCCA 1 cut(s) 817
MseI TTAA 2 cut(s) 203, 357
MslI CAYNNNNRTG 3 cut(s) 879, 969, 1299
Msp20I TGGCCA 1 cut(s) 817
MspI CCGG 1 cut(s) 990
MspR9I CCNGG 2 cut(s) 716, 814
Mva1269I GAATGC 1 cut(s) 732
MvaI CCWGG 2 cut(s) 716, 814
MwoI GCNNNNNNNGC 1 cut(s) 1127
NcoI CCATGG 1 cut(s) 191
NdeI CATATG 1 cut(s) 1300
NdeII GATC 2 cut(s) 844, 871
NheI GCTAGC 1 cut(s) 568
NlaIV GGNNCC 1 cut(s) 1256
NmuCI GTSAC 1 cut(s) 47
NsiI ATGCAT 2 cut(s) 450, 732
NspI RCATGY 3 cut(s) 55, 503, 524
NspV TTCGAA 1 cut(s) 407
PciI ACATGT 2 cut(s) 51, 499
PctI GAATGC 1 cut(s) 732
PfeI GAWTC 7 cut(s) 796, 807, 823, 896, 1232, 1248, 1313
Pfl23II CGTACG 2 cut(s) 1259, 1263
PkrI GCNGC 2 cut(s) 15, 977
PleI GAGTC 1 cut(s) 547
PpsI GAGTC 1 cut(s) 547
Ppu21I YACGTR 1 cut(s) 1263
PpuMI RGGWCCY 1 cut(s) 481
PscI ACATGT 2 cut(s) 51, 499
Psp5II RGGWCCY 1 cut(s) 481
Psp6I CCWGG 2 cut(s) 714, 812
PspGI CCWGG 2 cut(s) 714, 812
PspLI CGTACG 2 cut(s) 1259, 1263
PspN4I GGNNCC 1 cut(s) 1256
PspPI GGNCC 2 cut(s) 481, 1255
PspPPI RGGWCCY 1 cut(s) 481
PstI CTGCAG 1 cut(s) 1132
PstNI CAGNNNCTG 2 cut(s) 793, 1127
RsaI GTAC 8 cut(s) 128, 224, 248, 658, 1153, 1241, 1261, 1265
RsaNI GTAC 8 cut(s) 127, 223, 247, 657, 1152, 1240, 1260, 1264
RseI CAYNNNNRTG 3 cut(s) 879, 969, 1299
SaqAI TTAA 2 cut(s) 203, 357
SatI GCNGC 2 cut(s) 14, 976
Sau3AI GATC 2 cut(s) 844, 871
Sau96I GGNCC 2 cut(s) 481, 1255
SchI GAGTC 1 cut(s) 547
ScrFI CCNGG 2 cut(s) 716, 814
SduI GDGCHC 1 cut(s) 1143
SfaNI GCATC 4 cut(s) 67, 73, 749, 973
SfcI CTRYAG 1 cut(s) 1128
SfuI TTCGAA 1 cut(s) 407
SinI GGWCC 2 cut(s) 481, 1255
SmiMI CAYNNNNRTG 3 cut(s) 879, 969, 1299
SmlI CTYRAG 1 cut(s) 156
SmoI CTYRAG 1 cut(s) 156
SnaBI TACGTA 1 cut(s) 1263
Sse9I AATT 6 cut(s) 253, 332, 433, 469, 487, 583
SsiI CCGC 2 cut(s) 80, 976
SspMI CTAG 2 cut(s) 569, 938
StyD4I CCNGG 2 cut(s) 714, 812
StyI CCWWGG 3 cut(s) 191, 607, 921
TaaI ACNGT 2 cut(s) 246, 1259
TaiI ACGT 3 cut(s) 149, 420, 1265
TaqI TCGA 1 cut(s) 407
TaqII GACCGA 1 cut(s) 1068
TasI AATT 6 cut(s) 253, 332, 433, 469, 487, 583
TatI WGTACW 4 cut(s) 222, 246, 1151, 1239
TauI GCSGC 1 cut(s) 978
TfiI GAWTC 7 cut(s) 796, 807, 823, 896, 1232, 1248, 1313
Tru1I TTAA 2 cut(s) 203, 357
Tru9I TTAA 2 cut(s) 203, 357
TscAI CASTG 1 cut(s) 825
TseFI GTSAC 1 cut(s) 47
TseI GCWGC 1 cut(s) 13
Tsp45I GTSAC 1 cut(s) 47
TspDTI ATGAA 7 cut(s) 57, 105, 345, 362, 724, 1083, 1245
TspRI CASTG 1 cut(s) 825
VneI GTGCAC 1 cut(s) 1139
VpaK11BI GGWCC 2 cut(s) 481, 1255
XapI RAATTY 1 cut(s) 332
XbaI TCTAGA 1 cut(s) 937
XceI RCATGY 3 cut(s) 55, 503, 524
XspI CTAG 2 cut(s) 569, 938
ZraI GACGTC 1 cut(s) 418
Zsp2I ATGCAT 2 cut(s) 450, 732
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.