RLG00000008427

WD repeat-containing protein C2A9.03-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0003717
Physical Location & Seq
Forward (+)
30400672 .. 30405414
4743 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008427

Sequence Viewer

Length: 1209 bp
ATGGCCTTTGAGCAGCCTCATCAATTTGAATATATGGCGGATGAGGGTGACATGTCTGATTTCGTTGAGGACGTAGATGGGGATGCCGATGAAGAAAATCATGGTAGAGATATGGTTCTTGACGAATACGACATGACCAAAATTATGATACCGTTACTTGGCTTTGTGTCATCTCTCAAATATATTTTTCACATGAATGAGAACCTCAATTTTTATAGCATAATGTTGTTTTCTTATATTTATTACAATTCTGGAACAGTATCGATGCCTTCGGAAATATTTTTTTTTTATATACGTATCTACGTCTCCAATTTCCCGCCTTTTAACGTTATCAAGAATGATAAACTGCAAAATGACCCAATTGTTGTCTGGTTTTCCTTCTTGCGTTCCACAGATGAATGGTGTCAGCTACGAATGGAAGTCTGTTCATTGGAGTTGGGGCTTTTGTCTGGTTGCCCACTTTTTGTGTTTGTAATTGGGATAAGACTGATTGCAACTAGAGACAACGTACGTCTTGATAAGGAAGGAGTGAGTTTTTGTACGCGAACCACATACGATGACAATGCCATCACAAATGCTGTTGAAATATATGATAGCCTGGGGGGTGGAATGCATTTCATGGCATCCAATAATGATTGTGGTATAAGAGAATATGACATGGAGAGATTTCAGCTTCTGAATCACTTTCGATTCCCCTGGCCAGTGAATCATACGTCAATAAGCCCAGATCGTAGGGTTGTTGCTGTAGTTGGAGATCATGTGGATGGATTGCTTATGGATTCTCAGAATGGAAAGACTATTGCTAAGGTTGTTGGTCATCTAGATTACTCCTTTGCTTCTGCATGGCATCCTGATGGCTGCATATTTGCCACCGGAAATCAGGACAAGACTTCCCGAGTTTGGGATATAAGAAATCTTTCATCACCCATTGCAGTTCTGAAGAATAATTTGGGTGCTACTCGGTCTATTCGGTTTTCATCAGATGGTCAGTTTATGATCGTTGCAGAACCTGCAGATTTTGTGCATGTATATAGTACAAGGGCAGATTACAAAAAACGGCAAGAGATTGATTTCTTTGGAGAGATTTCGGGGGTATCAGCAAGTCCAGACAACGAGTCCTTGTACATAGGAATCTGGGACCGAACGTACGCAAGCTTGTTGCAATATAACAGAAGGCATACTTATGGATATCTTGATTCCTATTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

403

Amino Acids

46.21

Weight (kDa)

4.79

Isoelectric Point (pI)

37.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_THOC3 PF25174 203 - 373 3.7e-15 THOC3 beta-propeller domain
Beta-prop_WDR36-Utp21_2nd PF25168 205 - 346 1.7e-08 WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR5 PF25175 207 - 347 1.1e-10 WDR5 beta-propeller domain
WD40_Prp19 PF24814 234 - 360 1.2e-13 Prp19 WD40 domain
Beta-prop_EML_2 PF23414 279 - 356 2.3e-06 Echinoderm microtubule-associated protein second beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1018
AccII CGCG 1 cut(s) 544
AciI CCGC 2 cut(s) 38, 317
AclI AACGTT 1 cut(s) 327
AcoI YGGCCR 1 cut(s) 698
AcuI CTGAAG 1 cut(s) 959
AfaI GTAC 5 cut(s) 510, 541, 1036, 1124, 1148
AfiI CCNNNNNNNGG 3 cut(s) 158, 900, 901
AflIII ACRYGT 1 cut(s) 51
AgsI TTSAA 2 cut(s) 29, 584
AhdI GACNNNNNGTC 1 cut(s) 1114
AjnI CCWGG 2 cut(s) 597, 695
AjuI GAANNNNNNNTTGG 2 cut(s) 932, 964
AluBI AGCT 3 cut(s) 409, 673, 1155
AluI AGCT 3 cut(s) 409, 673, 1155
Alw26I GTCTC 2 cut(s) 310, 495
AlwNI CAGNNNCTG 2 cut(s) 676, 1010
Ama87I CYCGRG 1 cut(s) 894
AoxI GGCC 2 cut(s) 3, 698
ApeKI GCWGC 2 cut(s) 13, 858
Asp700I GAANNNNTTC 1 cut(s) 916
AspS9I GGNCC 1 cut(s) 1138
AsuHPI GGTGA 2 cut(s) 59, 915
AvaI CYCGRG 1 cut(s) 894
AvaII GGWCC 1 cut(s) 1138
BalI TGGCCA 1 cut(s) 700
BbvI GCAGC 2 cut(s) 25, 845
BccI CCATC 5 cut(s) 71, 575, 758, 848, 977
BceAI ACGGC 1 cut(s) 1073
BcgI CGANNNNNNTGC 2 cut(s) 545, 579
BciT130I CCWGG 2 cut(s) 599, 697
BcoDI GTCTC 2 cut(s) 310, 495
BfaI CTAG 2 cut(s) 498, 821
BfmI CTRYAG 2 cut(s) 744, 1011
BfuAI ACCTGC 1 cut(s) 1018
BisI GCNGC 2 cut(s) 14, 859
BlsI GCNGC 2 cut(s) 15, 860
Bme1390I CCNGG 2 cut(s) 599, 697
Bme18I GGWCC 1 cut(s) 1138
BmeRI GACNNNNNGTC 1 cut(s) 1114
BmeT110I CYCGRG 1 cut(s) 894
BmgT120I GGNCC 1 cut(s) 1138
BmiI GGNNCC 1 cut(s) 1139
BmrFI CCNGG 2 cut(s) 599, 697
BmsI GCATC 4 cut(s) 73, 255, 632, 856
Bpu10I CCTNAGC 1 cut(s) 804
Bsa29I ATCGAT 1 cut(s) 263
BsaAI YACGTR 1 cut(s) 296
BsaJI CCNNGG 2 cut(s) 598, 695
BsaWI WCCGGW 1 cut(s) 872
BsaXI ACNNNNNCTCC 2 cut(s) 744, 774
Bsc4I CCNNNNNNNGG 3 cut(s) 158, 900, 901
Bse1I ACTGG 1 cut(s) 701
Bse3DI GCAATG 1 cut(s) 927
BseBI CCWGG 2 cut(s) 599, 697
BseCI ATCGAT 1 cut(s) 263
BseDI CCNNGG 2 cut(s) 598, 695
BseGI GGATG 5 cut(s) 46, 88, 623, 769, 847
BseLI CCNNNNNNNGG 3 cut(s) 158, 900, 901
BseMI GCAATG 1 cut(s) 927
BseMII CTCAG 1 cut(s) 797
BseNI ACTGG 1 cut(s) 701
BseXI GCAGC 2 cut(s) 25, 845
Bsh1236I CGCG 1 cut(s) 544
BshFI GGCC 2 cut(s) 5, 700
BshVI ATCGAT 1 cut(s) 263
BsiHKCI CYCGRG 1 cut(s) 894
BsiSI CCGG 1 cut(s) 873
BsiWI CGTACG 2 cut(s) 508, 1146
BslFI GGGAC 1 cut(s) 1151
BslI CCNNNNNNNGG 3 cut(s) 158, 900, 901
BsmAI GTCTC 2 cut(s) 310, 495
BsmBI CGTCTC 1 cut(s) 310
BsmFI GGGAC 1 cut(s) 1151
BsmI GAATGC 1 cut(s) 615
BsnI GGCC 2 cut(s) 5, 700
BsoBI CYCGRG 1 cut(s) 894
Bsp1407I TGTACA 1 cut(s) 1122
Bsp143I GATC 3 cut(s) 727, 754, 996
BspACI CCGC 2 cut(s) 38, 317
BspANI GGCC 2 cut(s) 5, 700
BspCNI CTCAG 1 cut(s) 796
BspDI ATCGAT 1 cut(s) 263
BspFNI CGCG 1 cut(s) 544
BspLI GGNNCC 1 cut(s) 1139
BspMAI CTGCAG 1 cut(s) 1015
BspMI ACCTGC 1 cut(s) 1018
BsrDI GCAATG 1 cut(s) 927
BsrGI TGTACA 1 cut(s) 1122
BsrI ACTGG 1 cut(s) 701
BssECI CCNNGG 2 cut(s) 598, 695
BssMI GATC 3 cut(s) 727, 754, 996
Bst2UI CCWGG 2 cut(s) 599, 697
Bst4CI ACNGT 2 cut(s) 153, 259
BstAPI GCANNNNNTGC 1 cut(s) 1010
BstAUI TGTACA 1 cut(s) 1122
BstBAI YACGTR 1 cut(s) 296
BstC8I GCNNGC 1 cut(s) 1153
BstDEI CTNAG 2 cut(s) 783, 804
BstF5I GGATG 5 cut(s) 46, 88, 623, 769, 847
BstFNI CGCG 1 cut(s) 544
BstKTI GATC 3 cut(s) 730, 757, 999
BstMAI GTCTC 2 cut(s) 310, 495
BstMBI GATC 3 cut(s) 727, 754, 996
BstMWI GCNNNNNNNGC 1 cut(s) 1010
BstNI CCWGG 2 cut(s) 599, 697
BstNSI RCATGY 2 cut(s) 55, 1028
BstSCI CCNGG 2 cut(s) 597, 695
BstSFI CTRYAG 2 cut(s) 744, 1011
BstSNI TACGTA 1 cut(s) 296
BstUI CGCG 1 cut(s) 544
BstV1I GCAGC 2 cut(s) 25, 845
Bsu15I ATCGAT 1 cut(s) 263
BsuRI GGCC 2 cut(s) 5, 700
BsuTUI ATCGAT 1 cut(s) 263
BtsCI GGATG 5 cut(s) 46, 88, 623, 769, 847
BtsIMutI CAGTG 1 cut(s) 708
BveI ACCTGC 1 cut(s) 1018
Cac8I GCNNGC 1 cut(s) 1153
CaiI CAGNNNCTG 2 cut(s) 676, 1010
Cfr13I GGNCC 1 cut(s) 1138
ClaI ATCGAT 1 cut(s) 263
Csp6I GTAC 5 cut(s) 509, 540, 1035, 1123, 1147
CviAII CATG 9 cut(s) 52, 101, 133, 193, 619, 658, 758, 843, 1025
CviQI GTAC 5 cut(s) 509, 540, 1035, 1123, 1147
DdeI CTNAG 2 cut(s) 783, 804
DpnI GATC 3 cut(s) 729, 756, 998
DpnII GATC 3 cut(s) 727, 754, 996
DriI GACNNNNNGTC 1 cut(s) 1114
EaeI YGGCCR 1 cut(s) 698
Eam1105I GACNNNNNGTC 1 cut(s) 1114
EciI GGCGGA 1 cut(s) 53
Eco105I TACGTA 1 cut(s) 296
Eco32I GATATC 1 cut(s) 1190
Eco47I GGWCC 1 cut(s) 1138
Eco57I CTGAAG 1 cut(s) 959
Eco88I CYCGRG 1 cut(s) 894
EcoRII CCWGG 2 cut(s) 597, 695
EcoRV GATATC 1 cut(s) 1190
EcoT22I ATGCAT 1 cut(s) 615
Esp3I CGTCTC 1 cut(s) 310
FaeI CATG 9 cut(s) 55, 104, 136, 196, 622, 661, 761, 846, 1028
FalI AAGNNNNNCTT 2 cut(s) 1165, 1197
FaqI GGGAC 1 cut(s) 1151
FatI CATG 9 cut(s) 51, 100, 132, 192, 618, 657, 757, 842, 1024
FauI CCCGC 1 cut(s) 324
Fnu4HI GCNGC 2 cut(s) 14, 859
FokI GGATG 5 cut(s) 53, 95, 610, 776, 834
Fsp4HI GCNGC 2 cut(s) 14, 859
FspBI CTAG 2 cut(s) 498, 821
GluI GCNGC 2 cut(s) 14, 859
HaeIII GGCC 2 cut(s) 5, 700
HapII CCGG 1 cut(s) 873
Hin1II CATG 9 cut(s) 55, 104, 136, 196, 622, 661, 761, 846, 1028
HindIII AAGCTT 1 cut(s) 1153
HinfI GANTC 7 cut(s) 679, 690, 706, 779, 1115, 1131, 1196
HpaII CCGG 1 cut(s) 873
HphI GGTGA 2 cut(s) 59, 915
Hpy188I TCNGA 6 cut(s) 58, 274, 678, 786, 939, 982
HpyAV CCTTC 4 cut(s) 279, 388, 518, 1167
HpyCH4III ACNGT 2 cut(s) 153, 259
HpyCH4IV ACGT 8 cut(s) 72, 295, 303, 327, 507, 511, 713, 1145
HpyF10VI GCNNNNNNNGC 1 cut(s) 1010
HpyF3I CTNAG 2 cut(s) 783, 804
HpySE526I ACGT 8 cut(s) 72, 295, 303, 327, 507, 511, 713, 1145
Hsp92II CATG 9 cut(s) 55, 104, 136, 196, 622, 661, 761, 846, 1028
Kzo9I GATC 3 cut(s) 727, 754, 996
Lsp1109I GCAGC 2 cut(s) 25, 845
LweI GCATC 4 cut(s) 73, 255, 632, 856
MaeI CTAG 2 cut(s) 498, 821
MaeII ACGT 8 cut(s) 72, 295, 303, 327, 507, 511, 713, 1145
MaeIII GTNAC 2 cut(s) 47, 153
MalI GATC 3 cut(s) 729, 756, 998
MboI GATC 3 cut(s) 727, 754, 996
MboII GAAGA 2 cut(s) 104, 952
MfeI CAATTG 1 cut(s) 360
MlsI TGGCCA 1 cut(s) 700
MluCI AATT 8 cut(s) 23, 141, 208, 247, 310, 360, 474, 946
MluNI TGGCCA 1 cut(s) 700
MlyI GAGTC 1 cut(s) 1124
MmeI TCCRAC 1 cut(s) 730
MnlI CCTC 4 cut(s) 27, 37, 61, 215
Mox20I TGGCCA 1 cut(s) 700
Mph1103I ATGCAT 1 cut(s) 615
MroXI GAANNNNTTC 1 cut(s) 916
MscI TGGCCA 1 cut(s) 700
MseI TTAA 1 cut(s) 324
MslI CAYNNNNRTG 4 cut(s) 195, 762, 852, 1182
Msp20I TGGCCA 1 cut(s) 700
MspI CCGG 1 cut(s) 873
MspR9I CCNGG 2 cut(s) 599, 697
MunI CAATTG 1 cut(s) 360
Mva1269I GAATGC 1 cut(s) 615
MvaI CCWGG 2 cut(s) 599, 697
MvnI CGCG 1 cut(s) 544
MwoI GCNNNNNNNGC 1 cut(s) 1010
NdeII GATC 3 cut(s) 727, 754, 996
NlaIII CATG 9 cut(s) 55, 104, 136, 196, 622, 661, 761, 846, 1028
NlaIV GGNNCC 1 cut(s) 1139
NmuCI GTSAC 1 cut(s) 47
NsiI ATGCAT 1 cut(s) 615
NspI RCATGY 2 cut(s) 55, 1028
PciI ACATGT 1 cut(s) 51
PcsI WCGNNNNNNNCGW 1 cut(s) 69
PctI GAATGC 1 cut(s) 615
PdmI GAANNNNTTC 1 cut(s) 916
PfeI GAWTC 6 cut(s) 679, 690, 706, 779, 1131, 1196
Pfl23II CGTACG 2 cut(s) 508, 1146
PkrI GCNGC 2 cut(s) 15, 860
PleI GAGTC 1 cut(s) 1123
PpsI GAGTC 1 cut(s) 1123
Ppu21I YACGTR 1 cut(s) 296
PscI ACATGT 1 cut(s) 51
Psp1406I AACGTT 1 cut(s) 327
Psp6I CCWGG 2 cut(s) 597, 695
PspGI CCWGG 2 cut(s) 597, 695
PspLI CGTACG 2 cut(s) 508, 1146
PspN4I GGNNCC 1 cut(s) 1139
PspPI GGNCC 1 cut(s) 1138
PstI CTGCAG 1 cut(s) 1015
PstNI CAGNNNCTG 2 cut(s) 676, 1010
RsaI GTAC 5 cut(s) 510, 541, 1036, 1124, 1148
RsaNI GTAC 5 cut(s) 509, 540, 1035, 1123, 1147
RseI CAYNNNNRTG 4 cut(s) 195, 762, 852, 1182
SaqAI TTAA 1 cut(s) 324
SatI GCNGC 2 cut(s) 14, 859
Sau3AI GATC 3 cut(s) 727, 754, 996
Sau96I GGNCC 1 cut(s) 1138
SchI GAGTC 1 cut(s) 1124
ScrFI CCNGG 2 cut(s) 599, 697
SfaNI GCATC 4 cut(s) 73, 255, 632, 856
SfcI CTRYAG 2 cut(s) 744, 1011
SinI GGWCC 1 cut(s) 1138
SmiMI CAYNNNNRTG 4 cut(s) 195, 762, 852, 1182
SnaBI TACGTA 1 cut(s) 296
Sse9I AATT 8 cut(s) 23, 141, 208, 247, 310, 360, 474, 946
SsiI CCGC 2 cut(s) 38, 317
SspI AATATT 1 cut(s) 279
SspMI CTAG 2 cut(s) 498, 821
StyD4I CCNGG 2 cut(s) 597, 695
TaaI ACNGT 2 cut(s) 153, 259
TaiI ACGT 8 cut(s) 75, 298, 306, 330, 510, 514, 716, 1148
TaqI TCGA 2 cut(s) 263, 688
TaqII GACCGA 2 cut(s) 951, 1155
TasI AATT 8 cut(s) 23, 141, 208, 247, 310, 360, 474, 946
TatI WGTACW 2 cut(s) 1034, 1122
TfiI GAWTC 6 cut(s) 679, 690, 706, 779, 1131, 1196
Tru1I TTAA 1 cut(s) 324
Tru9I TTAA 1 cut(s) 324
TscAI CASTG 1 cut(s) 708
TseFI GTSAC 1 cut(s) 47
TseI GCWGC 2 cut(s) 13, 858
Tsp45I GTSAC 1 cut(s) 47
TspDTI ATGAA 7 cut(s) 105, 209, 411, 417, 607, 909, 966
TspRI CASTG 1 cut(s) 708
VpaK11BI GGWCC 1 cut(s) 1138
XbaI TCTAGA 1 cut(s) 820
XceI RCATGY 2 cut(s) 55, 1028
XcmI CCANNNNNNNNNTGG 1 cut(s) 366
XmnI GAANNNNTTC 1 cut(s) 916
XspI CTAG 2 cut(s) 498, 821
Zsp2I ATGCAT 1 cut(s) 615
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.