Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0003717

Physical Location & Seq

Genomic Coordinates Forward (+)

2076586 .. 2077427

Gene Structure 842 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g02320.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGATTCGCAGAATGGGAAGACTATTGCTAAGGTCGTTGGTCATCTGGATTACTCTTTTGCGTCAGCATGGCATCCTGATGGTCGCATATTTGCCACCGGAAACCAGGACAAGACTTCCCGAGTCTGGGACATAAGAAATCTTTCATTGCCAGTTGCCGTTCTGAAGAATAACTTGGGTGCTGCTAGGTCAATTCGCTTTTCATCAGATGGTCAGTTCATGGTGGTGGCGGAACCTGCAGATTTTGTGCATATATATAGCACAAAGGCAGATTACGAAGTGCGGCAAGAGATTGATTTCTTTGGGGAGATATCCGGTGTATCAATGAGTCCCGATGACGAGTCTCTGTATATAGGAATCTGGGACCGAACATACGCCAGCTTGCTACAGTATAACAGAAGGCATACGTACGGATATCTGGATTCCTATTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

145

Amino Acids

16.36

Weight (kDa)

5.46

Isoelectric Point (pI)

39.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003717)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56190 AT5G56190 AT5G56190 AT5G56190 AT5G56190 AT5G56190 AT5G56190
fragaria_vesca	FvH4_4g12360 FvH4_4g12360 FvH4_4g12360 FvH4_4g12360 FvH4_4g12360 FvH4_4g12360 FvH4_4g12360 FvH4_4g12360
malus_domestica	MD04G1026800.v1.1 MD04G1027500.v1.1
prunus_persica	Prupe.1G176900_v2.0.a1 Prupe.1G176900_v2.0.a1 Prupe.1G176900_v2.0.a1
pyrus_communis	pycom04g02300 pycom04g02310 pycom04g02320
rosa_chinensis	RchiOBHm_Chr4g0410471
rosa_laevigata	RLG00000008427
rosa_multiflora	Rmu_sc0001067.1_g000001
rosa_roxburghii	Rroxscaffold_5G00355270
rosa_rugosa	Rorug04G0114500 Rorug04G0114600
rosa_samantha	Rh4AG160800 Rh4CG173000
rosa_wichuraiana	Rw0G014370 Rw4G013400 Rw4G037770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	244
AciI	CCGC	2 cut(s)	230, 283
AcuI	CTGAAG	1 cut(s)	185
AfaI	GTAC	1 cut(s)	410
AfiI	CCNNNNNNNGG	2 cut(s)	126, 127
AjnI	CCWGG	1 cut(s)	105
AjuI	GAANNNNNNNTTGG	2 cut(s)	158, 190
AluBI	AGCT	1 cut(s)	381
AluI	AGCT	1 cut(s)	381
Alw26I	GTCTC	1 cut(s)	348
Ama87I	CYCGRG	1 cut(s)	120
ApeKI	GCWGC	1 cut(s)	182
Asp700I	GAANNNNTTC	1 cut(s)	142
AspS9I	GGNCC	1 cut(s)	364
AvaI	CYCGRG	1 cut(s)	120
AvaII	GGWCC	1 cut(s)	364
BbsI	GAAGAC	1 cut(s)	26
BbvI	GCAGC	1 cut(s)	169
BccI	CCATC	2 cut(s)	74, 203
BceAI	ACGGC	1 cut(s)	143
BciT130I	CCWGG	1 cut(s)	107
BcoDI	GTCTC	1 cut(s)	348
BfaI	CTAG	1 cut(s)	186
BfmI	CTRYAG	2 cut(s)	237, 386
BfuAI	ACCTGC	1 cut(s)	244
BisI	GCNGC	2 cut(s)	183, 284
BlsI	GCNGC	2 cut(s)	184, 285
Bme1390I	CCNGG	1 cut(s)	107
Bme18I	GGWCC	1 cut(s)	364
BmeT110I	CYCGRG	1 cut(s)	120
BmgT120I	GGNCC	1 cut(s)	364
BmiI	GGNNCC	2 cut(s)	234, 365
BmrFI	CCNGG	1 cut(s)	107
BmsI	GCATC	1 cut(s)	82
BpiI	GAAGAC	1 cut(s)	26
Bpu10I	CCTNAGC	1 cut(s)	30
BsaAI	YACGTR	1 cut(s)	408
BsaWI	WCCGGW	2 cut(s)	98, 314
Bsc4I	CCNNNNNNNGG	2 cut(s)	126, 127
Bse1I	ACTGG	1 cut(s)	152
Bse3DI	GCAATG	1 cut(s)	146
BseBI	CCWGG	1 cut(s)	107
BseGI	GGATG	1 cut(s)	73
BseLI	CCNNNNNNNGG	2 cut(s)	126, 127
BseMI	GCAATG	1 cut(s)	146
BseNI	ACTGG	1 cut(s)	152
BseXI	GCAGC	1 cut(s)	169
BsiHKCI	CYCGRG	1 cut(s)	120
BsiSI	CCGG	2 cut(s)	99, 315
BsiWI	CGTACG	1 cut(s)	408
BslFI	GGGAC	3 cut(s)	143, 315, 377
BslI	CCNNNNNNNGG	2 cut(s)	126, 127
BsmAI	GTCTC	1 cut(s)	348
BsmFI	GGGAC	3 cut(s)	143, 315, 377
BsoBI	CYCGRG	1 cut(s)	120
BspACI	CCGC	2 cut(s)	230, 283
BspLI	GGNNCC	2 cut(s)	234, 365
BspMAI	CTGCAG	1 cut(s)	241
BspMI	ACCTGC	1 cut(s)	244
BsrDI	GCAATG	1 cut(s)	146
BsrI	ACTGG	1 cut(s)	152
Bst2UI	CCWGG	1 cut(s)	107
Bst4CI	ACNGT	1 cut(s)	390
BstBAI	YACGTR	1 cut(s)	408
BstC8I	GCNNGC	2 cut(s)	379, 383
BstDEI	CTNAG	1 cut(s)	30
BstF5I	GGATG	1 cut(s)	73
BstMAI	GTCTC	1 cut(s)	348
BstMWI	GCNNNNNNNGC	1 cut(s)	236
BstNI	CCWGG	1 cut(s)	107
BstSCI	CCNGG	1 cut(s)	105
BstSFI	CTRYAG	2 cut(s)	237, 386
BstSNI	TACGTA	1 cut(s)	408
BstV1I	GCAGC	1 cut(s)	169
BstV2I	GAAGAC	1 cut(s)	26
BtsCI	GGATG	1 cut(s)	73
BveI	ACCTGC	1 cut(s)	244
Cac8I	GCNNGC	2 cut(s)	379, 383
Cfr13I	GGNCC	1 cut(s)	364
CseI	GACGC	1 cut(s)	51
Csp6I	GTAC	1 cut(s)	409
CviAII	CATG	2 cut(s)	69, 220
CviJI	RGCY	1 cut(s)	381
CviKI_1	RGCY	1 cut(s)	381
CviQI	GTAC	1 cut(s)	409
DdeI	CTNAG	1 cut(s)	30
EciI	GGCGGA	1 cut(s)	245
Eco105I	TACGTA	1 cut(s)	408
Eco32I	GATATC	2 cut(s)	312, 416
Eco47I	GGWCC	1 cut(s)	364
Eco57I	CTGAAG	1 cut(s)	185
Eco88I	CYCGRG	1 cut(s)	120
EcoRII	CCWGG	1 cut(s)	105
EcoRV	GATATC	2 cut(s)	312, 416
FaeI	CATG	2 cut(s)	72, 223
FalI	AAGNNNNNCTT	2 cut(s)	158, 190
FaqI	GGGAC	3 cut(s)	143, 315, 377
FatI	CATG	2 cut(s)	68, 219
Fnu4HI	GCNGC	2 cut(s)	183, 284
FokI	GGATG	1 cut(s)	60
Fsp4HI	GCNGC	2 cut(s)	183, 284
FspBI	CTAG	1 cut(s)	186
GluI	GCNGC	2 cut(s)	183, 284
HapII	CCGG	2 cut(s)	99, 315
HgaI	GACGC	1 cut(s)	51
Hin1II	CATG	2 cut(s)	72, 223
HinfI	GANTC	6 cut(s)	5, 123, 328, 341, 357, 422
HpaII	CCGG	2 cut(s)	99, 315
Hpy188I	TCNGA	2 cut(s)	165, 208
Hpy188III	TCNNGA	5 cut(s)	47, 77, 120, 332, 419
HpyAV	CCTTC	1 cut(s)	393
HpyCH4III	ACNGT	1 cut(s)	390
HpyCH4IV	ACGT	1 cut(s)	407
HpyCH4V	TGCA	2 cut(s)	239, 250
HpyF10VI	GCNNNNNNNGC	1 cut(s)	236
HpyF3I	CTNAG	1 cut(s)	30
HpySE526I	ACGT	1 cut(s)	407
Hsp92II	CATG	2 cut(s)	72, 223
Lsp1109I	GCAGC	1 cut(s)	169
LweI	GCATC	1 cut(s)	82
MaeI	CTAG	1 cut(s)	186
MaeII	ACGT	1 cut(s)	407
MboII	GAAGA	2 cut(s)	31, 178
MluCI	AATT	1 cut(s)	192
MlyI	GAGTC	3 cut(s)	132, 337, 350
MroXI	GAANNNNTTC	1 cut(s)	142
MslI	CAYNNNNRTG	2 cut(s)	78, 224
MspI	CCGG	2 cut(s)	99, 315
MspR9I	CCNGG	1 cut(s)	107
MvaI	CCWGG	1 cut(s)	107
MwoI	GCNNNNNNNGC	1 cut(s)	236
NlaIII	CATG	2 cut(s)	72, 223
NlaIV	GGNNCC	2 cut(s)	234, 365
PdmI	GAANNNNTTC	1 cut(s)	142
PfeI	GAWTC	3 cut(s)	5, 357, 422
Pfl23II	CGTACG	1 cut(s)	408
PkrI	GCNGC	2 cut(s)	184, 285
PleI	GAGTC	3 cut(s)	131, 336, 349
PpsI	GAGTC	3 cut(s)	131, 336, 349
Ppu21I	YACGTR	1 cut(s)	408
Psp6I	CCWGG	1 cut(s)	105
PspGI	CCWGG	1 cut(s)	105
PspLI	CGTACG	1 cut(s)	408
PspN4I	GGNNCC	2 cut(s)	234, 365
PspPI	GGNCC	1 cut(s)	364
PstI	CTGCAG	1 cut(s)	241
RsaI	GTAC	1 cut(s)	410
RsaNI	GTAC	1 cut(s)	409
RseI	CAYNNNNRTG	2 cut(s)	78, 224
SatI	GCNGC	2 cut(s)	183, 284
Sau96I	GGNCC	1 cut(s)	364
SchI	GAGTC	3 cut(s)	132, 337, 350
ScrFI	CCNGG	1 cut(s)	107
SetI	ASST	5 cut(s)	36, 191, 238, 383, 410
SfaNI	GCATC	1 cut(s)	82
SfcI	CTRYAG	2 cut(s)	237, 386
SinI	GGWCC	1 cut(s)	364
SmiMI	CAYNNNNRTG	2 cut(s)	78, 224
SnaBI	TACGTA	1 cut(s)	408
Sse9I	AATT	1 cut(s)	192
SsiI	CCGC	2 cut(s)	230, 283
SspMI	CTAG	1 cut(s)	186
StyD4I	CCNGG	1 cut(s)	105
TaaI	ACNGT	1 cut(s)	390
TaiI	ACGT	1 cut(s)	410
TaqII	GACCGA	1 cut(s)	381
TasI	AATT	1 cut(s)	192
TauI	GCSGC	1 cut(s)	286
TfiI	GAWTC	3 cut(s)	5, 357, 422
TseI	GCWGC	1 cut(s)	182
TspDTI	ATGAA	3 cut(s)	135, 192, 208
TspGWI	ACGGA	1 cut(s)	426
VpaK11BI	GGWCC	1 cut(s)	364
XmnI	GAANNNNTTC	1 cut(s)	142
XspI	CTAG	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.