MD04G1026800.v1.1

WD repeat-containing protein C2A9.03-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0003717
Physical Location & Seq
Forward (+)
3102139 .. 3115445
13307 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1026800.v1.1.491

Sequence Viewer

Length: 1272 bp
ATGGCGGATGAAGGGGACATGTCTGATTTTGTTGAGGATGTGGAGGAAGAAAATCAAGGTGGAGATATGGGTCTTGATGAATATGACATGTTTGAGCAGCTTACCAAAGTGTCAGATACGTCATCTGCACAAGCAAGAAAGGGAAAGGACATTCAAGGTATTCCATGGGACAGATTGAGCATAACAAAGGAAAAATACAGATTGACGAGGCTAGAACAGTACAGAAATTATGAGAACATCCCTTTATCTGGGGAAGCTGTGGACAAGGAGTGCAAACAAATGCAGAAAGGTGGAAACTACTATGACTTCTTCCATAATACAAGACTGGTTAAACCTACAATCCTTCATTTCCAGCTGAGAAATTTGGTTTGGGCCACTTCAAAGCATGATGTCTACTTCATGTCCCACTTTTCAGTCATGCATTGGTCTTCTCTATCTGGGAATTTGTCTGAGGTTCTCAATTTTGCAGGACATGTTGCCCCAACAGAGAAACATGCAGGAAGTTTATTGGAGGGTTTTATGCAGACTCAGATAAGCACACTGGCAGTCAAGGACAATTTTCTTGTTGCTGGTGGCTTTCAAGGAGAGCTTACTTGTAAATCTCTTGATAAACAAGGAGTAAGTTTCTGTACCCGGACCACACATGATGACAGTGCCATCACAAATGCTGTTGAAATATACGATAGATTGGGGGGTGGAATGCATTTCATGGCATCCAATAATGACTGCGGCATAAGAGAATATGACATGGAGAAGTTTCAGCTTTTGAATCACTTTCGTCTCCCTTGGCCAGTGAATCATACATCAATAAGCCCAGATCGTAGGCTTGTTGCCGTTGTTGGTGATCATGTAGATGCATTGCTCATGGATTCGCAGAATGGGAAGACTATTGCTAAGGTCGTTGGTCATCTGGATTACTCTTTTGCGTCAGCATGGCATCCTGATGGTTGCATATTTGCCACTGGAAACCAGGACAAGACTTCCCGAGTCTGGGACATAAGAAATCTTTCATTGCCAGTTGCCGTTCTGAAGAATAGCTTGGGTGCTGCTAGGTCAATTCGCTTTTCATCAGATGGTCAGTTCTTGGTGGTCGCGGAACCTGCAGATTTTGTGCATATATATAGCACAAAGGCATACTACAAAGTGCGGCAAGAGATTGATTTCTTTGGGGAGATATCCGGTGTATCAATGAGTCCCGATGATGAGTCTCTGTATATAGGAATCTGGGACCGAACATACGCCAGCTTGCTACAGTATAACAGAAGGCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

424

Amino Acids

47.84

Weight (kDa)

5.5

Isoelectric Point (pI)

34.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_Prp19 PF24814 185 - 377 2e-14 Prp19 WD40 domain
Beta-prop_THOC3 PF25174 233 - 404 1.3e-17 THOC3 beta-propeller domain
WD40_Gbeta PF25391 233 - 370 3.4e-06 G protein beta WD-40 repeat protein
WD40_WDHD1_1st PF24817 235 - 404 2e-06 WDHD1 first WD40 domain
Beta-prop_WDR36-Utp21_2nd PF25168 236 - 380 4e-11 WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR5 PF25175 237 - 406 2.8e-12 WDR5 beta-propeller domain
WD40_CDC20-Fz PF24807 263 - 384 1.7e-06 CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st PF25173 265 - 411 4.4e-07 WDR3 first beta-propeller domain
Beta-prop_EML_2 PF23414 311 - 411 4.4e-08 Echinoderm microtubule-associated protein second beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1108
AccI GTMKAC 1 cut(s) 393
AccII CGCG 1 cut(s) 1094
AciI CCGC 4 cut(s) 5, 729, 1094, 1147
AcoI YGGCCR 1 cut(s) 788
AcsI RAATTY 2 cut(s) 361, 442
AcuI CTGAAG 1 cut(s) 1049
AfaI GTAC 2 cut(s) 221, 631
AfiI CCNNNNNNNGG 3 cut(s) 248, 990, 991
AflIII ACRYGT 3 cut(s) 18, 87, 472
AgsI TTSAA 5 cut(s) 155, 381, 581, 674, 769
AjnI CCWGG 1 cut(s) 969
AjuI GAANNNNNNNTTGG 4 cut(s) 352, 384, 1022, 1054
AluBI AGCT 7 cut(s) 100, 257, 355, 589, 763, 1038, 1245
AluI AGCT 7 cut(s) 100, 257, 355, 589, 763, 1038, 1245
Alw26I GTCTC 2 cut(s) 785, 1212
Ama87I CYCGRG 1 cut(s) 984
AoxI GGCC 2 cut(s) 372, 788
ApeKI GCWGC 2 cut(s) 97, 1046
ApoI RAATTY 2 cut(s) 361, 442
Asp700I GAANNNNTTC 1 cut(s) 1006
AspS9I GGNCC 3 cut(s) 372, 636, 1228
AsuC2I CCSGG 1 cut(s) 634
AsuHPI GGTGA 1 cut(s) 854
AvaI CYCGRG 1 cut(s) 984
AvaII GGWCC 2 cut(s) 636, 1228
BalI TGGCCA 1 cut(s) 790
BbsI GAAGAC 2 cut(s) 420, 890
BbvI GCAGC 2 cut(s) 109, 1033
BccI CCATC 3 cut(s) 665, 938, 1067
BceAI ACGGC 2 cut(s) 818, 1007
BciT130I CCWGG 1 cut(s) 971
BclI TGATCA 1 cut(s) 844
BcnI CCSGG 1 cut(s) 634
BcoDI GTCTC 2 cut(s) 785, 1212
BfaI CTAG 2 cut(s) 212, 1050
BfmI CTRYAG 2 cut(s) 1101, 1250
BfuAI ACCTGC 1 cut(s) 1108
BisI GCNGC 4 cut(s) 98, 730, 1047, 1148
BlsI GCNGC 4 cut(s) 99, 731, 1048, 1149
Bme1390I CCNGG 2 cut(s) 634, 971
Bme18I GGWCC 2 cut(s) 636, 1228
BmeT110I CYCGRG 1 cut(s) 984
BmgT120I GGNCC 3 cut(s) 372, 636, 1228
BmiI GGNNCC 2 cut(s) 1098, 1229
BmrFI CCNGG 2 cut(s) 634, 971
BmsI GCATC 3 cut(s) 722, 844, 946
BpiI GAAGAC 2 cut(s) 420, 890
Bpu10I CCTNAGC 1 cut(s) 894
BpuMI CCSGG 1 cut(s) 634
BsaJI CCNNGG 2 cut(s) 164, 785
BsaWI WCCGGW 1 cut(s) 1178
Bsc4I CCNNNNNNNGG 3 cut(s) 248, 990, 991
Bse1I ACTGG 5 cut(s) 330, 546, 791, 967, 1016
Bse3DI GCAATG 2 cut(s) 857, 1010
BseBI CCWGG 1 cut(s) 971
BseDI CCNNGG 2 cut(s) 164, 785
BseGI GGATG 5 cut(s) 13, 43, 237, 713, 937
BseLI CCNNNNNNNGG 3 cut(s) 248, 990, 991
BseMI GCAATG 2 cut(s) 857, 1010
BseMII CTCAG 3 cut(s) 347, 441, 542
BseNI ACTGG 5 cut(s) 330, 546, 791, 967, 1016
BseXI GCAGC 2 cut(s) 109, 1033
BsgI GTGCAG 1 cut(s) 111
Bsh1236I CGCG 1 cut(s) 1094
BshFI GGCC 2 cut(s) 374, 790
BsiHKCI CYCGRG 1 cut(s) 984
BsiSI CCGG 2 cut(s) 634, 1179
BslFI GGGAC 6 cut(s) 29, 182, 388, 1007, 1179, 1241
BslI CCNNNNNNNGG 3 cut(s) 248, 990, 991
BsmAI GTCTC 2 cut(s) 785, 1212
BsmBI CGTCTC 1 cut(s) 785
BsmFI GGGAC 6 cut(s) 29, 182, 388, 1007, 1179, 1241
BsmI GAATGC 1 cut(s) 705
BsnI GGCC 2 cut(s) 374, 790
BsoBI CYCGRG 1 cut(s) 984
Bsp143I GATC 2 cut(s) 817, 844
Bsp19I CCATGG 1 cut(s) 164
BspACI CCGC 4 cut(s) 5, 729, 1094, 1147
BspANI GGCC 2 cut(s) 374, 790
BspCNI CTCAG 3 cut(s) 348, 442, 541
BspFNI CGCG 1 cut(s) 1094
BspLI GGNNCC 2 cut(s) 1098, 1229
BspMAI CTGCAG 1 cut(s) 1105
BspMI ACCTGC 1 cut(s) 1108
BsrDI GCAATG 2 cut(s) 857, 1010
BsrI ACTGG 5 cut(s) 330, 546, 791, 967, 1016
BssECI CCNNGG 2 cut(s) 164, 785
BssMI GATC 2 cut(s) 817, 844
BssT1I CCWWGG 2 cut(s) 164, 785
Bst2UI CCWGG 1 cut(s) 971
Bst4CI ACNGT 3 cut(s) 219, 653, 1254
BstC8I GCNNGC 2 cut(s) 1243, 1247
BstDEI CTNAG 4 cut(s) 356, 450, 528, 894
BstDSI CCRYGG 1 cut(s) 164
BstF5I GGATG 5 cut(s) 13, 43, 237, 713, 937
BstFNI CGCG 1 cut(s) 1094
BstKTI GATC 2 cut(s) 820, 847
BstMAI GTCTC 2 cut(s) 785, 1212
BstMBI GATC 2 cut(s) 817, 844
BstMWI GCNNNNNNNGC 1 cut(s) 1100
BstNI CCWGG 1 cut(s) 971
BstNSI RCATGY 4 cut(s) 22, 91, 476, 497
BstSCI CCNGG 2 cut(s) 632, 969
BstSFI CTRYAG 2 cut(s) 1101, 1250
BstUI CGCG 1 cut(s) 1094
BstV1I GCAGC 2 cut(s) 109, 1033
BstV2I GAAGAC 2 cut(s) 420, 890
BsuRI GGCC 2 cut(s) 374, 790
BtgI CCRYGG 1 cut(s) 164
BtsCI GGATG 5 cut(s) 13, 43, 237, 713, 937
BtsIMutI CAGTG 4 cut(s) 539, 658, 798, 960
BveI ACCTGC 1 cut(s) 1108
Cac8I GCNNGC 2 cut(s) 1243, 1247
Cfr13I GGNCC 3 cut(s) 372, 636, 1228
CseI GACGC 1 cut(s) 915
Csp6I GTAC 2 cut(s) 220, 630
CviQI GTAC 2 cut(s) 220, 630
DdeI CTNAG 4 cut(s) 356, 450, 528, 894
DpnI GATC 2 cut(s) 819, 846
DpnII GATC 2 cut(s) 817, 844
EaeI YGGCCR 1 cut(s) 788
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 2 cut(s) 164, 785
Eco32I GATATC 1 cut(s) 1176
Eco47I GGWCC 2 cut(s) 636, 1228
Eco57I CTGAAG 1 cut(s) 1049
Eco88I CYCGRG 1 cut(s) 984
EcoRII CCWGG 1 cut(s) 969
EcoRV GATATC 1 cut(s) 1176
EcoT14I CCWWGG 2 cut(s) 164, 785
EcoT22I ATGCAT 3 cut(s) 423, 705, 859
ErhI CCWWGG 2 cut(s) 164, 785
Esp3I CGTCTC 1 cut(s) 785
FalI AAGNNNNNCTT 4 cut(s) 573, 605, 1022, 1054
FaqI GGGAC 6 cut(s) 29, 182, 388, 1007, 1179, 1241
FbaI TGATCA 1 cut(s) 844
FblI GTMKAC 1 cut(s) 393
Fnu4HI GCNGC 4 cut(s) 98, 730, 1047, 1148
FokI GGATG 5 cut(s) 20, 50, 224, 700, 924
Fsp4HI GCNGC 4 cut(s) 98, 730, 1047, 1148
FspBI CTAG 2 cut(s) 212, 1050
GluI GCNGC 4 cut(s) 98, 730, 1047, 1148
HaeIII GGCC 2 cut(s) 374, 790
HapII CCGG 2 cut(s) 634, 1179
HgaI GACGC 1 cut(s) 915
HinfI GANTC 8 cut(s) 526, 769, 796, 869, 987, 1192, 1205, 1221
HpaII CCGG 2 cut(s) 634, 1179
HphI GGTGA 1 cut(s) 854
Hpy166II GTNNAC 2 cut(s) 262, 394
Hpy188I TCNGA 6 cut(s) 25, 115, 451, 531, 1029, 1072
Hpy188III TCNNGA 6 cut(s) 74, 605, 911, 941, 984, 1196
Hpy8I GTNNAC 2 cut(s) 262, 394
HpyAV CCTTC 3 cut(s) 5, 353, 1257
HpyCH4III ACNGT 3 cut(s) 219, 653, 1254
HpyCH4IV ACGT 1 cut(s) 119
HpyF10VI GCNNNNNNNGC 1 cut(s) 1100
HpyF3I CTNAG 4 cut(s) 356, 450, 528, 894
HpySE526I ACGT 1 cut(s) 119
Ksp22I TGATCA 1 cut(s) 844
Kzo9I GATC 2 cut(s) 817, 844
Lsp1109I GCAGC 2 cut(s) 109, 1033
LweI GCATC 3 cut(s) 722, 844, 946
MaeI CTAG 2 cut(s) 212, 1050
MaeII ACGT 1 cut(s) 119
MalI GATC 2 cut(s) 819, 846
MboI GATC 2 cut(s) 817, 844
MboII GAAGA 5 cut(s) 59, 301, 420, 895, 1042
MlsI TGGCCA 1 cut(s) 790
MluCI AATT 6 cut(s) 226, 361, 442, 460, 556, 1056
MluNI TGGCCA 1 cut(s) 790
MlyI GAGTC 4 cut(s) 520, 996, 1201, 1214
MnlI CCTC 5 cut(s) 28, 37, 201, 445, 505
Mox20I TGGCCA 1 cut(s) 790
Mph1103I ATGCAT 3 cut(s) 423, 705, 859
MroXI GAANNNNTTC 1 cut(s) 1006
MscI TGGCCA 1 cut(s) 790
MseI TTAA 1 cut(s) 330
MslI CAYNNNNRTG 2 cut(s) 852, 942
Msp20I TGGCCA 1 cut(s) 790
MspA1I CMGCKG 1 cut(s) 355
MspI CCGG 2 cut(s) 634, 1179
MspR9I CCNGG 2 cut(s) 634, 971
Mva1269I GAATGC 1 cut(s) 705
MvaI CCWGG 1 cut(s) 971
MvnI CGCG 1 cut(s) 1094
MwoI GCNNNNNNNGC 1 cut(s) 1100
NciI CCSGG 1 cut(s) 634
NcoI CCATGG 1 cut(s) 164
NdeII GATC 2 cut(s) 817, 844
NlaIV GGNNCC 2 cut(s) 1098, 1229
NsiI ATGCAT 3 cut(s) 423, 705, 859
NspI RCATGY 4 cut(s) 22, 91, 476, 497
PciI ACATGT 3 cut(s) 18, 87, 472
PctI GAATGC 1 cut(s) 705
PdmI GAANNNNTTC 1 cut(s) 1006
PfeI GAWTC 4 cut(s) 769, 796, 869, 1221
PkrI GCNGC 4 cut(s) 99, 731, 1048, 1149
PleI GAGTC 4 cut(s) 520, 995, 1200, 1213
PpsI GAGTC 4 cut(s) 520, 995, 1200, 1213
PscI ACATGT 3 cut(s) 18, 87, 472
Psp6I CCWGG 1 cut(s) 969
PspGI CCWGG 1 cut(s) 969
PspN4I GGNNCC 2 cut(s) 1098, 1229
PspPI GGNCC 3 cut(s) 372, 636, 1228
PstI CTGCAG 1 cut(s) 1105
PvuII CAGCTG 1 cut(s) 355
RsaI GTAC 2 cut(s) 221, 631
RsaNI GTAC 2 cut(s) 220, 630
RseI CAYNNNNRTG 2 cut(s) 852, 942
SaqAI TTAA 1 cut(s) 330
SatI GCNGC 4 cut(s) 98, 730, 1047, 1148
Sau3AI GATC 2 cut(s) 817, 844
Sau96I GGNCC 3 cut(s) 372, 636, 1228
SchI GAGTC 4 cut(s) 520, 996, 1201, 1214
ScrFI CCNGG 2 cut(s) 634, 971
SfaNI GCATC 3 cut(s) 722, 844, 946
SfcI CTRYAG 2 cut(s) 1101, 1250
SinI GGWCC 2 cut(s) 636, 1228
SmiMI CAYNNNNRTG 2 cut(s) 852, 942
Sse9I AATT 6 cut(s) 226, 361, 442, 460, 556, 1056
SsiI CCGC 4 cut(s) 5, 729, 1094, 1147
SspMI CTAG 2 cut(s) 212, 1050
StyD4I CCNGG 2 cut(s) 632, 969
StyI CCWWGG 2 cut(s) 164, 785
TaaI ACNGT 3 cut(s) 219, 653, 1254
TaiI ACGT 1 cut(s) 122
TaqII GACCGA 1 cut(s) 1245
TasI AATT 6 cut(s) 226, 361, 442, 460, 556, 1056
TatI WGTACW 1 cut(s) 219
TauI GCSGC 2 cut(s) 732, 1150
TfiI GAWTC 4 cut(s) 769, 796, 869, 1221
Tru1I TTAA 1 cut(s) 330
Tru9I TTAA 1 cut(s) 330
TscAI CASTG 4 cut(s) 546, 658, 798, 967
TseI GCWGC 2 cut(s) 97, 1046
TspDTI ATGAA 7 cut(s) 24, 93, 335, 388, 697, 999, 1056
TspRI CASTG 4 cut(s) 546, 658, 798, 967
VpaK11BI GGWCC 2 cut(s) 636, 1228
XapI RAATTY 2 cut(s) 361, 442
XceI RCATGY 4 cut(s) 22, 91, 476, 497
XmiI GTMKAC 1 cut(s) 393
XmnI GAANNNNTTC 1 cut(s) 1006
XspI CTAG 2 cut(s) 212, 1050
Zsp2I ATGCAT 3 cut(s) 423, 705, 859
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.