Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001067.1

Orthogroup ID

OG0003717

Physical Location & Seq

Genomic Coordinates Forward (+)

1252 .. 7015

Gene Structure 5764 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001067.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1308 bp

atggcttttgagcagcctcatcagtttgaatatatggcggatgagggtgacatgtctgatttcgttgaggacgcagatgtagatgctgatgaagaaaatcatggtagagatatggttcttgacgaatacgacatgcttaaccaggtgtcggatacgtcttctgcccaagcaagaaaaggaaaggatattcagggtattccgtgggataggttaaacataacgagggagaagtacagattgacgaggcttgaacagtacaagaattatgagaatatcccttcatctggggaagctgtggacaaggaatgtcaactaatgcagaagggtggcaactactatgaattcttccacaacacaagactggttaaacctacaatccttcattttcagctcagaaatctggtttgggctacttcaaaacatgacgtctatctcatgtccaattattcagttatgcattggtcttctctatctagcaatttgtctgaggtcctcaatttttcaggacatgttgcaccaactgagaaacatgcaggaagtttgttggagggttttatgcagactcagataagcaccctagcagtcaaggacaattttcttgttgctggaggtttccaaggagagcttacttgcaagcgtcttgataaagaaggagtgagtttttgtacgcgaaccacatacgatgacaatgccatcacaaatgctgttgaaatatatgatagcctggcgggtggaatgcatttcatggcatccaataatgattgtggtataagagaatatgacatggagagatttcagcttctgaatcactttcgattcccctggccagtgaatcatacatcaataagccccgatcgtagggttgttgccgtagttggagatcacgtggatggattgcttatggattctcagaatggaaagactattgctaaggttgttggtcatctagattactcctttgcttctgcatggcatcccgatggccgcatatttgccaccggaaatcaggacaagacttcccgagtttgggatataagaaatctttcatcacccattgcagttctgaagaataacttgggtgctactcggtctattcggttttcatcagatggtcagtttatgatggttgcagaacctgcagattttgacatcgatgtgatgctatttgaaagtttgtgctgcaatgtagcgatgaggagcaacgttttcgggtggcgatggacgtttgtcgtttcctctagtcgacgaggtcattcaagtttgttgcagcagcgccgatggaggtggatctcaggtatgagtgtatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

435

Amino Acids

49.58

Weight (kDa)

5.52

Isoelectric Point (pI)

41.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003717)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56190 AT5G56190 AT5G56190 AT5G56190 AT5G56190 AT5G56190 AT5G56190
fragaria_vesca	FvH4_4g12360 FvH4_4g12360 FvH4_4g12360 FvH4_4g12360 FvH4_4g12360 FvH4_4g12360 FvH4_4g12360 FvH4_4g12360
malus_domestica	MD04G1026800.v1.1 MD04G1027500.v1.1
prunus_persica	Prupe.1G176900_v2.0.a1 Prupe.1G176900_v2.0.a1 Prupe.1G176900_v2.0.a1
pyrus_communis	pycom04g02300 pycom04g02310 pycom04g02320
rosa_chinensis	RchiOBHm_Chr4g0410471
rosa_laevigata	RLG00000008427
rosa_multiflora	Rmu_sc0001067.1_g000001
rosa_roxburghii	Rroxscaffold_5G00355270
rosa_rugosa	Rorug04G0114500 Rorug04G0114600
rosa_samantha	Rh4AG160800 Rh4CG173000
rosa_wichuraiana	Rw0G014370 Rw4G013400 Rw4G037770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	429
Acc36I	ACCTGC	1 cut(s)	1144
AccI	GTMKAC	1 cut(s)	1243
AccII	CGCG	1 cut(s)	670
AciI	CCGC	3 cut(s)	38, 728, 985
AclI	AACGTT	1 cut(s)	1203
AclWI	GGATC	1 cut(s)	1295
AcoI	YGGCCR	2 cut(s)	824, 982
AcsI	RAATTY	1 cut(s)	341
AcuI	CTGAAG	1 cut(s)	1085
AcvI	CACGTG	1 cut(s)	886
AcyI	GRCGYC	1 cut(s)	426
AfaI	GTAC	3 cut(s)	233, 257, 667
AfiI	CCNNNNNNNGG	5 cut(s)	148, 284, 858, 1026, 1027
AflIII	ACRYGT	2 cut(s)	51, 508
AgsI	TTSAA	6 cut(s)	29, 251, 417, 710, 1169, 1257
AjnI	CCWGG	3 cut(s)	141, 723, 821
AjuI	GAANNNNNNNTTGG	4 cut(s)	388, 420, 1058, 1090
AluBI	AGCT	4 cut(s)	293, 391, 625, 799
AluI	AGCT	4 cut(s)	293, 391, 625, 799
AlwI	GGATC	1 cut(s)	1295
AlwNI	CAGNNNCTG	2 cut(s)	802, 1136
Ama87I	CYCGRG	1 cut(s)	1020
AoxI	GGCC	2 cut(s)	824, 982
ApeKI	GCWGC	4 cut(s)	13, 1179, 1267, 1270
ApoI	RAATTY	1 cut(s)	341
Asp700I	GAANNNNTTC	1 cut(s)	1042
AspLEI	GCGC	1 cut(s)	1275
AspS9I	GGNCC	1 cut(s)	490
AsuHPI	GGTGA	2 cut(s)	59, 1041
AvaI	CYCGRG	1 cut(s)	1020
AvaII	GGWCC	1 cut(s)	490
BalI	TGGCCA	1 cut(s)	826
BbrPI	CACGTG	1 cut(s)	886
BbsI	GAAGAC	2 cut(s)	150, 456
BbvI	GCAGC	4 cut(s)	25, 1166, 1279, 1282
BccI	CCATC	7 cut(s)	701, 884, 974, 1103, 1117, 1212, 1272
BceAI	ACGGC	1 cut(s)	854
BcgI	CGANNNNNNTGC	4 cut(s)	671, 705, 1189, 1223
BciT130I	CCWGG	3 cut(s)	143, 725, 823
BciVI	GTATCC	1 cut(s)	145
BfaI	CTAG	4 cut(s)	474, 578, 947, 1239
BfmI	CTRYAG	1 cut(s)	1137
BfoI	RGCGCY	1 cut(s)	1276
BfuAI	ACCTGC	1 cut(s)	1144
BfuI	GTATCC	1 cut(s)	145
BisI	GCNGC	5 cut(s)	14, 985, 1180, 1268, 1271
BlsI	GCNGC	5 cut(s)	15, 986, 1181, 1269, 1272
Bme1390I	CCNGG	3 cut(s)	143, 725, 823
Bme18I	GGWCC	1 cut(s)	490
BmeT110I	CYCGRG	1 cut(s)	1020
BmgT120I	GGNCC	1 cut(s)	490
BmrFI	CCNGG	3 cut(s)	143, 725, 823
BmsI	GCATC	4 cut(s)	73, 758, 982, 1149
BoxI	GACNNNNGTC	1 cut(s)	1226
BpiI	GAAGAC	2 cut(s)	150, 456
BpmI	CTGGAG	1 cut(s)	627
Bpu10I	CCTNAGC	1 cut(s)	930
Bsa29I	ATCGAT	1 cut(s)	1152
BsaAI	YACGTR	1 cut(s)	886
BsaHI	GRCGYC	1 cut(s)	426
BsaJI	CCNNGG	3 cut(s)	200, 616, 821
BsaWI	WCCGGW	1 cut(s)	998
BsaXI	ACNNNNNCTCC	2 cut(s)	870, 900
Bsc4I	CCNNNNNNNGG	5 cut(s)	148, 284, 858, 1026, 1027
Bse1I	ACTGG	2 cut(s)	366, 827
Bse3DI	GCAATG	2 cut(s)	1053, 1189
BseBI	CCWGG	3 cut(s)	143, 725, 823
BseCI	ATCGAT	1 cut(s)	1152
BseDI	CCNNGG	3 cut(s)	200, 616, 821
BseGI	GGATG	4 cut(s)	46, 749, 895, 973
BseLI	CCNNNNNNNGG	5 cut(s)	148, 284, 858, 1026, 1027
BseMI	GCAATG	2 cut(s)	1053, 1189
BseMII	CTCAG	6 cut(s)	406, 477, 513, 578, 923, 1305
BseNI	ACTGG	2 cut(s)	366, 827
BseRI	GAGGAG	1 cut(s)	1210
BseXI	GCAGC	4 cut(s)	25, 1166, 1279, 1282
Bsh1236I	CGCG	1 cut(s)	670
Bsh1285I	CGRYCG	1 cut(s)	856
BshFI	GGCC	2 cut(s)	826, 984
BshVI	ATCGAT	1 cut(s)	1152
BsiEI	CGRYCG	1 cut(s)	856
BsiHKCI	CYCGRG	1 cut(s)	1020
BsiSI	CCGG	1 cut(s)	999
BslI	CCNNNNNNNGG	5 cut(s)	148, 284, 858, 1026, 1027
BsmI	GAATGC	1 cut(s)	741
BsnI	GGCC	2 cut(s)	826, 984
BsoBI	CYCGRG	1 cut(s)	1020
Bsp143I	GATC	3 cut(s)	853, 880, 1287
BspACI	CCGC	3 cut(s)	38, 728, 985
BspANI	GGCC	2 cut(s)	826, 984
BspCNI	CTCAG	6 cut(s)	405, 478, 514, 577, 922, 1304
BspDI	ATCGAT	1 cut(s)	1152
BspFNI	CGCG	1 cut(s)	670
BspMAI	CTGCAG	1 cut(s)	1141
BspMI	ACCTGC	1 cut(s)	1144
BspPI	GGATC	1 cut(s)	1295
BsrDI	GCAATG	2 cut(s)	1053, 1189
BsrI	ACTGG	2 cut(s)	366, 827
BssECI	CCNNGG	3 cut(s)	200, 616, 821
BssMI	GATC	3 cut(s)	853, 880, 1287
BssNI	GRCGYC	1 cut(s)	426
BssT1I	CCWWGG	1 cut(s)	616
Bst2UI	CCWGG	3 cut(s)	143, 725, 823
Bst4CI	ACNGT	1 cut(s)	255
BstACI	GRCGYC	1 cut(s)	426
BstAPI	GCANNNNNTGC	1 cut(s)	1136
BstBAI	YACGTR	1 cut(s)	886
BstC8I	GCNNGC	1 cut(s)	635
BstDEI	CTNAG	7 cut(s)	392, 486, 522, 564, 909, 930, 1291
BstDSI	CCRYGG	1 cut(s)	200
BstF5I	GGATG	4 cut(s)	46, 749, 895, 973
BstFNI	CGCG	1 cut(s)	670
BstH2I	RGCGCY	1 cut(s)	1276
BstHHI	GCGC	1 cut(s)	1275
BstKTI	GATC	3 cut(s)	856, 883, 1290
BstMBI	GATC	3 cut(s)	853, 880, 1287
BstMCI	CGRYCG	1 cut(s)	856
BstMWI	GCNNNNNNNGC	1 cut(s)	1136
BstNI	CCWGG	3 cut(s)	143, 725, 823
BstNSI	RCATGY	4 cut(s)	55, 136, 512, 533
BstPAI	GACNNNNGTC	1 cut(s)	1226
BstSCI	CCNGG	3 cut(s)	141, 723, 821
BstSFI	CTRYAG	1 cut(s)	1137
BstUI	CGCG	1 cut(s)	670
BstV1I	GCAGC	4 cut(s)	25, 1166, 1279, 1282
BstV2I	GAAGAC	2 cut(s)	150, 456
BstX2I	RGATCY	1 cut(s)	1287
BstYI	RGATCY	1 cut(s)	1287
Bsu15I	ATCGAT	1 cut(s)	1152
BsuI	GTATCC	1 cut(s)	145
BsuRI	GGCC	2 cut(s)	826, 984
BsuTUI	ATCGAT	1 cut(s)	1152
BtgI	CCRYGG	1 cut(s)	200
BtgZI	GCGATG	2 cut(s)	1205, 1231
BtsCI	GGATG	4 cut(s)	46, 749, 895, 973
BtsIMutI	CAGTG	1 cut(s)	834
BveI	ACCTGC	1 cut(s)	1144
Cac8I	GCNNGC	1 cut(s)	635
CaiI	CAGNNNCTG	2 cut(s)	802, 1136
CfoI	GCGC	1 cut(s)	1275
Cfr13I	GGNCC	1 cut(s)	490
ClaI	ATCGAT	1 cut(s)	1152
CseI	GACGC	2 cut(s)	80, 626
CsiI	ACCWGGT	1 cut(s)	141
Csp6I	GTAC	3 cut(s)	232, 256, 666
CviQI	GTAC	3 cut(s)	232, 256, 666
DdeI	CTNAG	7 cut(s)	392, 486, 522, 564, 909, 930, 1291
DpnI	GATC	3 cut(s)	855, 882, 1289
DpnII	GATC	3 cut(s)	853, 880, 1287
EaeI	YGGCCR	2 cut(s)	824, 982
EciI	GGCGGA	1 cut(s)	53
Eco130I	CCWWGG	1 cut(s)	616
Eco47I	GGWCC	1 cut(s)	490
Eco57I	CTGAAG	1 cut(s)	1085
Eco72I	CACGTG	1 cut(s)	886
Eco88I	CYCGRG	1 cut(s)	1020
EcoO109I	RGGNCCY	1 cut(s)	490
EcoRI	GAATTC	1 cut(s)	341
EcoRII	CCWGG	3 cut(s)	141, 723, 821
EcoT14I	CCWWGG	1 cut(s)	616
EcoT22I	ATGCAT	2 cut(s)	459, 741
ErhI	CCWWGG	1 cut(s)	616
FalI	AAGNNNNNCTT	4 cut(s)	609, 641, 1058, 1090
FauI	CCCGC	1 cut(s)	721
FblI	GTMKAC	1 cut(s)	1243
Fnu4HI	GCNGC	5 cut(s)	14, 985, 1180, 1268, 1271
FokI	GGATG	4 cut(s)	53, 736, 902, 960
Fsp4HI	GCNGC	5 cut(s)	14, 985, 1180, 1268, 1271
FspBI	CTAG	4 cut(s)	474, 578, 947, 1239
GlaI	GCGC	1 cut(s)	1274
GluI	GCNGC	5 cut(s)	14, 985, 1180, 1268, 1271
GsuI	CTGGAG	1 cut(s)	627
HaeII	RGCGCY	1 cut(s)	1276
HaeIII	GGCC	2 cut(s)	826, 984
HapII	CCGG	1 cut(s)	999
HgaI	GACGC	2 cut(s)	80, 626
HhaI	GCGC	1 cut(s)	1275
Hin1I	GRCGYC	1 cut(s)	426
Hin6I	GCGC	1 cut(s)	1273
HinP1I	GCGC	1 cut(s)	1273
HincII	GTYRAC	2 cut(s)	311, 1244
HindII	GTYRAC	2 cut(s)	311, 1244
HinfI	GANTC	5 cut(s)	562, 805, 816, 832, 905
HpaII	CCGG	1 cut(s)	999
HphI	GGTGA	2 cut(s)	59, 1041
Hpy166II	GTNNAC	3 cut(s)	298, 311, 1244
Hpy188I	TCNGA	9 cut(s)	58, 151, 395, 487, 567, 804, 912, 1065, 1108
Hpy188III	TCNNGA	7 cut(s)	119, 504, 641, 947, 977, 1007, 1020
Hpy8I	GTNNAC	3 cut(s)	298, 311, 1244
Hpy99I	CGWCG	1 cut(s)	1248
HpyAV	CCTTC	4 cut(s)	288, 316, 389, 644
HpyCH4III	ACNGT	1 cut(s)	255
HpyCH4IV	ACGT	5 cut(s)	155, 426, 885, 1203, 1223
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1136
HpyF3I	CTNAG	7 cut(s)	392, 486, 522, 564, 909, 930, 1291
HpySE526I	ACGT	5 cut(s)	155, 426, 885, 1203, 1223
Hsp92I	GRCGYC	1 cut(s)	426
HspAI	GCGC	1 cut(s)	1273
Kzo9I	GATC	3 cut(s)	853, 880, 1287
LmnI	GCTCC	1 cut(s)	1197
Lsp1109I	GCAGC	4 cut(s)	25, 1166, 1279, 1282
LweI	GCATC	4 cut(s)	73, 758, 982, 1149
MabI	ACCWGGT	1 cut(s)	141
MaeI	CTAG	4 cut(s)	474, 578, 947, 1239
MaeII	ACGT	5 cut(s)	155, 426, 885, 1203, 1223
MaeIII	GTNAC	1 cut(s)	47
MalI	GATC	3 cut(s)	855, 882, 1289
MboI	GATC	3 cut(s)	853, 880, 1287
MboII	GAAGA	5 cut(s)	104, 150, 337, 456, 1078
MflI	RGATCY	1 cut(s)	1287
MlsI	TGGCCA	1 cut(s)	826
MluCI	AATT	6 cut(s)	262, 341, 442, 478, 496, 592
MluNI	TGGCCA	1 cut(s)	826
MlyI	GAGTC	1 cut(s)	556
MmeI	TCCRAC	3 cut(s)	129, 525, 856
Mox20I	TGGCCA	1 cut(s)	826
Mph1103I	ATGCAT	2 cut(s)	459, 741
MroXI	GAANNNNTTC	1 cut(s)	1042
MscI	TGGCCA	1 cut(s)	826
MseI	TTAA	3 cut(s)	138, 212, 366
MslI	CAYNNNNRTG	3 cut(s)	888, 978, 1154
Msp20I	TGGCCA	1 cut(s)	826
MspI	CCGG	1 cut(s)	999
MspR9I	CCNGG	3 cut(s)	143, 725, 823
Mva1269I	GAATGC	1 cut(s)	741
MvaI	CCWGG	3 cut(s)	143, 725, 823
MvnI	CGCG	1 cut(s)	670
MwoI	GCNNNNNNNGC	1 cut(s)	1136
NdeII	GATC	3 cut(s)	853, 880, 1287
NmuCI	GTSAC	1 cut(s)	47
NsiI	ATGCAT	2 cut(s)	459, 741
NspI	RCATGY	4 cut(s)	55, 136, 512, 533
PciI	ACATGT	2 cut(s)	51, 508
PctI	GAATGC	1 cut(s)	741
PdmI	GAANNNNTTC	1 cut(s)	1042
PfeI	GAWTC	4 cut(s)	805, 816, 832, 905
PflFI	GACNNNGTC	1 cut(s)	1248
PkrI	GCNGC	5 cut(s)	15, 986, 1181, 1269, 1272
Ple19I	CGATCG	1 cut(s)	856
PleI	GAGTC	1 cut(s)	556
PmaCI	CACGTG	1 cut(s)	886
PmlI	CACGTG	1 cut(s)	886
PpsI	GAGTC	1 cut(s)	556
Ppu21I	YACGTR	1 cut(s)	886
PpuMI	RGGWCCY	1 cut(s)	490
PscI	ACATGT	2 cut(s)	51, 508
PshAI	GACNNNNGTC	1 cut(s)	1226
Psp1406I	AACGTT	1 cut(s)	1203
Psp5II	RGGWCCY	1 cut(s)	490
Psp6I	CCWGG	3 cut(s)	141, 723, 821
PspCI	CACGTG	1 cut(s)	886
PspGI	CCWGG	3 cut(s)	141, 723, 821
PspPI	GGNCC	1 cut(s)	490
PspPPI	RGGWCCY	1 cut(s)	490
PstI	CTGCAG	1 cut(s)	1141
PstNI	CAGNNNCTG	2 cut(s)	802, 1136
PsuI	RGATCY	1 cut(s)	1287
PsyI	GACNNNGTC	1 cut(s)	1248
PvuI	CGATCG	1 cut(s)	856
RsaI	GTAC	3 cut(s)	233, 257, 667
RsaNI	GTAC	3 cut(s)	232, 256, 666
RseI	CAYNNNNRTG	3 cut(s)	888, 978, 1154
SalI	GTCGAC	1 cut(s)	1242
SaqAI	TTAA	3 cut(s)	138, 212, 366
SatI	GCNGC	5 cut(s)	14, 985, 1180, 1268, 1271
Sau3AI	GATC	3 cut(s)	853, 880, 1287
Sau96I	GGNCC	1 cut(s)	490
SchI	GAGTC	1 cut(s)	556
ScrFI	CCNGG	3 cut(s)	143, 725, 823
SexAI	ACCWGGT	1 cut(s)	141
SfaNI	GCATC	4 cut(s)	73, 758, 982, 1149
SfcI	CTRYAG	1 cut(s)	1137
SinI	GGWCC	1 cut(s)	490
SmiMI	CAYNNNNRTG	3 cut(s)	888, 978, 1154
Sse9I	AATT	6 cut(s)	262, 341, 442, 478, 496, 592
SsiI	CCGC	3 cut(s)	38, 728, 985
SspMI	CTAG	4 cut(s)	474, 578, 947, 1239
StyD4I	CCNGG	3 cut(s)	141, 723, 821
StyI	CCWWGG	1 cut(s)	616
TaaI	ACNGT	1 cut(s)	255
TaiI	ACGT	5 cut(s)	158, 429, 888, 1206, 1226
TaqI	TCGA	3 cut(s)	814, 1152, 1243
TaqII	GACCGA	1 cut(s)	1077
TasI	AATT	6 cut(s)	262, 341, 442, 478, 496, 592
TatI	WGTACW	2 cut(s)	231, 255
TauI	GCSGC	1 cut(s)	987
TfiI	GAWTC	4 cut(s)	805, 816, 832, 905
Tru1I	TTAA	3 cut(s)	138, 212, 366
Tru9I	TTAA	3 cut(s)	138, 212, 366
TscAI	CASTG	1 cut(s)	834
TseFI	GTSAC	1 cut(s)	47
TseI	GCWGC	4 cut(s)	13, 1179, 1267, 1270
Tsp45I	GTSAC	1 cut(s)	47
TspDTI	ATGAA	7 cut(s)	105, 270, 354, 371, 733, 1035, 1092
TspGWI	ACGGA	1 cut(s)	189
TspRI	CASTG	1 cut(s)	834
Tth111I	GACNNNGTC	1 cut(s)	1248
VpaK11BI	GGWCC	1 cut(s)	490
XapI	RAATTY	1 cut(s)	341
XbaI	TCTAGA	1 cut(s)	946
XceI	RCATGY	4 cut(s)	55, 136, 512, 533
XmiI	GTMKAC	1 cut(s)	1243
XmnI	GAANNNNTTC	1 cut(s)	1042
XspI	CTAG	4 cut(s)	474, 578, 947, 1239
ZraI	GACGTC	1 cut(s)	427
Zsp2I	ATGCAT	2 cut(s)	459, 741

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.