Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003717

Physical Location & Seq

Genomic Coordinates Forward (+)

18014459 .. 18014656

Gene Structure 198 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0114600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 198 bp

ATGTGGATTCTCTCCGGAAGCTGCGGTTTTAGTCTCCAAGAAGTTCAAACTGTCATCCCAAGAGAGAGCAGACTCTGTTCTGGTGTTTTTGAGAACCCATGGAGGACTGTCCAAAGCCCAGATCTCAAAGCTTCTCAGGTCACACCCAGCATATCTTGCAGCGGCCTGTCCCGAAAAGACCCTTCTGCCCAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

65

Amino Acids

7.1

Weight (kDa)

6.11

Isoelectric Point (pI)

57.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003717)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56190 AT5G56190 AT5G56190 AT5G56190 AT5G56190 AT5G56190 AT5G56190
fragaria_vesca	FvH4_4g12360 FvH4_4g12360 FvH4_4g12360 FvH4_4g12360 FvH4_4g12360 FvH4_4g12360 FvH4_4g12360 FvH4_4g12360
malus_domestica	MD04G1026800.v1.1 MD04G1027500.v1.1
prunus_persica	Prupe.1G176900_v2.0.a1 Prupe.1G176900_v2.0.a1 Prupe.1G176900_v2.0.a1
pyrus_communis	pycom04g02300 pycom04g02310 pycom04g02320
rosa_chinensis	RchiOBHm_Chr4g0410471
rosa_laevigata	RLG00000008427
rosa_multiflora	Rmu_sc0001067.1_g000001
rosa_roxburghii	Rroxscaffold_5G00355270
rosa_rugosa	Rorug04G0114500 Rorug04G0114600
rosa_samantha	Rh4AG160800 Rh4CG173000
rosa_wichuraiana	Rw0G014370 Rw4G013400 Rw4G037770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	14
AciI	CCGC	2 cut(s)	24, 162
AgsI	TTSAA	1 cut(s)	47
AluBI	AGCT	2 cut(s)	21, 131
AluI	AGCT	2 cut(s)	21, 131
Alw26I	GTCTC	1 cut(s)	38
AlwNI	CAGNNNCTG	1 cut(s)	75
Aor13HI	TCCGGA	1 cut(s)	14
AoxI	GGCC	1 cut(s)	163
ApeKI	GCWGC	2 cut(s)	21, 159
BbvI	GCAGC	2 cut(s)	8, 171
BcoDI	GTCTC	1 cut(s)	38
BglII	AGATCT	1 cut(s)	121
BisI	GCNGC	3 cut(s)	22, 160, 163
BlsI	GCNGC	3 cut(s)	23, 161, 164
BsaJI	CCNNGG	1 cut(s)	98
BsaWI	WCCGGW	1 cut(s)	14
BseAI	TCCGGA	1 cut(s)	14
BseDI	CCNNGG	1 cut(s)	98
BseGI	GGATG	1 cut(s)	54
BseMII	CTCAG	1 cut(s)	149
BseXI	GCAGC	2 cut(s)	8, 171
BseYI	CCCAGC	1 cut(s)	146
BshFI	GGCC	1 cut(s)	165
BsiSI	CCGG	1 cut(s)	15
BslFI	GGGAC	1 cut(s)	154
BsmAI	GTCTC	1 cut(s)	38
BsmFI	GGGAC	1 cut(s)	154
BsnI	GGCC	1 cut(s)	165
Bsp13I	TCCGGA	1 cut(s)	14
Bsp143I	GATC	1 cut(s)	121
Bsp19I	CCATGG	1 cut(s)	98
BspACI	CCGC	2 cut(s)	24, 162
BspANI	GGCC	1 cut(s)	165
BspCNI	CTCAG	1 cut(s)	148
BspEI	TCCGGA	1 cut(s)	14
BssECI	CCNNGG	1 cut(s)	98
BssMI	GATC	1 cut(s)	121
BssT1I	CCWWGG	1 cut(s)	98
Bst4CI	ACNGT	2 cut(s)	52, 109
BstAPI	GCANNNNNTGC	1 cut(s)	156
BstDEI	CTNAG	1 cut(s)	135
BstDSI	CCRYGG	1 cut(s)	98
BstF5I	GGATG	1 cut(s)	54
BstKTI	GATC	1 cut(s)	124
BstMAI	GTCTC	1 cut(s)	38
BstMBI	GATC	1 cut(s)	121
BstMWI	GCNNNNNNNGC	1 cut(s)	156
BstV1I	GCAGC	2 cut(s)	8, 171
BstX2I	RGATCY	1 cut(s)	121
BstYI	RGATCY	1 cut(s)	121
BsuRI	GGCC	1 cut(s)	165
BtgI	CCRYGG	1 cut(s)	98
BtsCI	GGATG	1 cut(s)	54
CaiI	CAGNNNCTG	1 cut(s)	75
CviAII	CATG	1 cut(s)	99
CviJI	RGCY	4 cut(s)	21, 117, 131, 165
CviKI_1	RGCY	4 cut(s)	21, 117, 131, 165
DdeI	CTNAG	1 cut(s)	135
DpnI	GATC	1 cut(s)	123
DpnII	GATC	1 cut(s)	121
Eco130I	CCWWGG	1 cut(s)	98
EcoT14I	CCWWGG	1 cut(s)	98
ErhI	CCWWGG	1 cut(s)	98
FaeI	CATG	1 cut(s)	102
FaiI	YATR	2 cut(s)	100, 152
FaqI	GGGAC	1 cut(s)	154
FatI	CATG	1 cut(s)	98
Fnu4HI	GCNGC	3 cut(s)	22, 160, 163
FokI	GGATG	1 cut(s)	41
Fsp4HI	GCNGC	3 cut(s)	22, 160, 163
GluI	GCNGC	3 cut(s)	22, 160, 163
GsaI	CCCAGC	1 cut(s)	150
HaeIII	GGCC	1 cut(s)	165
HapII	CCGG	1 cut(s)	15
Hin1II	CATG	1 cut(s)	102
HindIII	AAGCTT	1 cut(s)	129
HinfI	GANTC	2 cut(s)	7, 72
HpaII	CCGG	1 cut(s)	15
Hpy188III	TCNNGA	2 cut(s)	15, 171
HpyAV	CCTTC	1 cut(s)	192
HpyCH4III	ACNGT	2 cut(s)	52, 109
HpyCH4V	TGCA	1 cut(s)	159
HpyF10VI	GCNNNNNNNGC	1 cut(s)	156
HpyF3I	CTNAG	1 cut(s)	135
Hsp92II	CATG	1 cut(s)	102
Kpn2I	TCCGGA	1 cut(s)	14
Kzo9I	GATC	1 cut(s)	121
LpnPI	CCDG	6 cut(s)	28, 66, 122, 132, 160, 179
Lsp1109I	GCAGC	2 cut(s)	8, 171
MaeIII	GTNAC	1 cut(s)	139
MalI	GATC	1 cut(s)	123
MboI	GATC	1 cut(s)	121
MflI	RGATCY	1 cut(s)	121
MlyI	GAGTC	1 cut(s)	66
MnlI	CCTC	1 cut(s)	96
MroI	TCCGGA	1 cut(s)	14
MspA1I	CMGCKG	1 cut(s)	162
MspI	CCGG	1 cut(s)	15
MwoI	GCNNNNNNNGC	1 cut(s)	156
NcoI	CCATGG	1 cut(s)	98
NdeII	GATC	1 cut(s)	121
NlaIII	CATG	1 cut(s)	102
NmuCI	GTSAC	1 cut(s)	139
PfeI	GAWTC	1 cut(s)	7
PkrI	GCNGC	3 cut(s)	23, 161, 164
PleI	GAGTC	1 cut(s)	66
PpsI	GAGTC	1 cut(s)	66
PspFI	CCCAGC	1 cut(s)	146
PstNI	CAGNNNCTG	1 cut(s)	75
PsuI	RGATCY	1 cut(s)	121
SatI	GCNGC	3 cut(s)	22, 160, 163
Sau3AI	GATC	1 cut(s)	121
SchI	GAGTC	1 cut(s)	66
SetI	ASST	3 cut(s)	23, 133, 141
SsiI	CCGC	2 cut(s)	24, 162
StyI	CCWWGG	1 cut(s)	98
TaaI	ACNGT	2 cut(s)	52, 109
TauI	GCSGC	1 cut(s)	165
TfiI	GAWTC	1 cut(s)	7
TseFI	GTSAC	1 cut(s)	139
TseI	GCWGC	2 cut(s)	21, 159
Tsp45I	GTSAC	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.