Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0003717

Physical Location & Seq

Genomic Coordinates Forward (+)

2073010 .. 2076531

Gene Structure 3522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g02310.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGTCTTACCAGCAGGGCTATCAATTCGATTATATGGCGGATGAAGGGGACATGTCTGATTTTGTCGAGGATGTGGAGGAAGAAAATCAAGGTGGAGATATGGGTCTTGATGAATATGACATGCTTACCAAAGTGTCAGATACGTCATCTGCACAAGCGAGAAAGGGAAAGGACATTCAAGGTATTCCATGGGACAGATTGAACATAACAAGGGAAAAATACAGATTGACGAGGCTAGAACAGTACAAGAATTATGAGAACATCCCTTTATCTGGGGAAGCTGTGGACAAGGAGTGCAAACAAATGCAGAAAGGTGGAAACTACTATGACTTCTTCCATAATACAAGACTGGTTAAACCTACAATCCTTCATTTCCAGCTGAGAAATTTGGTTTGGGCCACTTCAAAGCATGATGTATACCTCATGTCCAACTTTTCAGTCATGCATTGGTCATCTCTATCTGGGAATTTGTCTGAGGTTCTCAATTTTGCAGGACATGTTGCCCCAACAGAGAAACATGCAGGAAGTTTATTGGAGGGTTTTATGCAGACTCAGATAAGCACACTGGCAGTCAAGGACAATTTTCTTGTTGCTGGTGGCTTTCAAGGAGAGCTTACTTGTAAATCTCTTGATAAACAAGGAGTAAGTTTCTGTACCCGGACCACACATGATGACAATGCCATCACAAATGCTGTTGAAATATACGATAGATTGGGGGGTGGAATGCATTTCATGGCATCCAATAATGACTGCGGCATAAGAGAATATGACATGGAGAAGTTTCAGCTTTTAAATCACTTTCGTTTCCCTTGGCCAGTGAATGCTAACATACATCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

280

Amino Acids

31.91

Weight (kDa)

5.17

Isoelectric Point (pI)

35.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003717)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56190 AT5G56190 AT5G56190 AT5G56190 AT5G56190 AT5G56190 AT5G56190
fragaria_vesca	FvH4_4g12360 FvH4_4g12360 FvH4_4g12360 FvH4_4g12360 FvH4_4g12360 FvH4_4g12360 FvH4_4g12360 FvH4_4g12360
malus_domestica	MD04G1026800.v1.1 MD04G1027500.v1.1
prunus_persica	Prupe.1G176900_v2.0.a1 Prupe.1G176900_v2.0.a1 Prupe.1G176900_v2.0.a1
pyrus_communis	pycom04g02300 pycom04g02310 pycom04g02320
rosa_chinensis	RchiOBHm_Chr4g0410471
rosa_laevigata	RLG00000008427
rosa_multiflora	Rmu_sc0001067.1_g000001
rosa_roxburghii	Rroxscaffold_5G00355270
rosa_rugosa	Rorug04G0114500 Rorug04G0114600
rosa_samantha	Rh4AG160800 Rh4CG173000
rosa_wichuraiana	Rw0G014370 Rw4G013400 Rw4G037770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	417
AciI	CCGC	2 cut(s)	38, 753
AcoI	YGGCCR	1 cut(s)	812
AcsI	RAATTY	2 cut(s)	385, 466
AfaI	GTAC	2 cut(s)	245, 655
AfiI	CCNNNNNNNGG	1 cut(s)	272
AflIII	ACRYGT	2 cut(s)	51, 496
AgsI	TTSAA	5 cut(s)	179, 202, 405, 605, 698
AjuI	GAANNNNNNNTTGG	2 cut(s)	376, 408
AluBI	AGCT	4 cut(s)	281, 379, 613, 787
AluI	AGCT	4 cut(s)	281, 379, 613, 787
AoxI	GGCC	2 cut(s)	396, 812
ApoI	RAATTY	2 cut(s)	385, 466
AspS9I	GGNCC	2 cut(s)	396, 660
AsuC2I	CCSGG	1 cut(s)	658
AvaII	GGWCC	1 cut(s)	660
BalI	TGGCCA	1 cut(s)	814
BccI	CCATC	1 cut(s)	689
BcnI	CCSGG	1 cut(s)	658
BfaI	CTAG	1 cut(s)	236
BisI	GCNGC	1 cut(s)	754
BlsI	GCNGC	1 cut(s)	755
Bme1390I	CCNGG	1 cut(s)	658
Bme18I	GGWCC	1 cut(s)	660
BmgT120I	GGNCC	2 cut(s)	396, 660
BmrFI	CCNGG	1 cut(s)	658
BmsI	GCATC	1 cut(s)	746
BpuMI	CCSGG	1 cut(s)	658
BsaJI	CCNNGG	2 cut(s)	188, 809
Bsc4I	CCNNNNNNNGG	1 cut(s)	272
Bse1I	ACTGG	3 cut(s)	354, 570, 815
BseDI	CCNNGG	2 cut(s)	188, 809
BseGI	GGATG	4 cut(s)	46, 76, 261, 737
BseLI	CCNNNNNNNGG	1 cut(s)	272
BseMII	CTCAG	3 cut(s)	371, 465, 566
BseNI	ACTGG	3 cut(s)	354, 570, 815
BsgI	GTGCAG	1 cut(s)	135
BshFI	GGCC	2 cut(s)	398, 814
BsiSI	CCGG	1 cut(s)	658
BslFI	GGGAC	2 cut(s)	62, 206
BslI	CCNNNNNNNGG	1 cut(s)	272
BsmFI	GGGAC	2 cut(s)	62, 206
BsmI	GAATGC	2 cut(s)	729, 826
BsnI	GGCC	2 cut(s)	398, 814
Bsp19I	CCATGG	1 cut(s)	188
BspACI	CCGC	2 cut(s)	38, 753
BspANI	GGCC	2 cut(s)	398, 814
BspCNI	CTCAG	3 cut(s)	372, 466, 565
BsrI	ACTGG	3 cut(s)	354, 570, 815
BssECI	CCNNGG	2 cut(s)	188, 809
BssNAI	GTATAC	1 cut(s)	418
BssT1I	CCWWGG	2 cut(s)	188, 809
Bst1107I	GTATAC	1 cut(s)	418
Bst4CI	ACNGT	1 cut(s)	243
BstDEI	CTNAG	3 cut(s)	380, 474, 552
BstDSI	CCRYGG	1 cut(s)	188
BstF5I	GGATG	4 cut(s)	46, 76, 261, 737
BstNSI	RCATGY	4 cut(s)	55, 124, 500, 521
BstSCI	CCNGG	1 cut(s)	656
BstZ17I	GTATAC	1 cut(s)	418
BsuRI	GGCC	2 cut(s)	398, 814
BtgI	CCRYGG	1 cut(s)	188
BtsCI	GGATG	4 cut(s)	46, 76, 261, 737
BtsIMutI	CAGTG	2 cut(s)	563, 822
Cfr13I	GGNCC	2 cut(s)	396, 660
Csp6I	GTAC	2 cut(s)	244, 654
CviJI	RGCY	9 cut(s)	18, 235, 281, 379, 398, 600, 613, 787, 814
CviKI_1	RGCY	9 cut(s)	18, 235, 281, 379, 398, 600, 613, 787, 814
CviQI	GTAC	2 cut(s)	244, 654
DdeI	CTNAG	3 cut(s)	380, 474, 552
DraI	TTTAAA	1 cut(s)	792
EaeI	YGGCCR	1 cut(s)	812
EciI	GGCGGA	1 cut(s)	53
Eco130I	CCWWGG	2 cut(s)	188, 809
Eco47I	GGWCC	1 cut(s)	660
EcoT14I	CCWWGG	2 cut(s)	188, 809
EcoT22I	ATGCAT	2 cut(s)	447, 729
ErhI	CCWWGG	2 cut(s)	188, 809
FalI	AAGNNNNNCTT	2 cut(s)	597, 629
FaqI	GGGAC	2 cut(s)	62, 206
FblI	GTMKAC	1 cut(s)	417
Fnu4HI	GCNGC	1 cut(s)	754
FokI	GGATG	4 cut(s)	53, 83, 248, 724
Fsp4HI	GCNGC	1 cut(s)	754
FspBI	CTAG	1 cut(s)	236
GluI	GCNGC	1 cut(s)	754
HaeIII	GGCC	2 cut(s)	398, 814
HapII	CCGG	1 cut(s)	658
HinfI	GANTC	1 cut(s)	550
HpaII	CCGG	1 cut(s)	658
Hpy166II	GTNNAC	2 cut(s)	286, 418
Hpy188I	TCNGA	4 cut(s)	58, 139, 475, 555
Hpy188III	TCNNGA	2 cut(s)	107, 629
Hpy8I	GTNNAC	2 cut(s)	286, 418
HpyAV	CCTTC	2 cut(s)	38, 377
HpyCH4III	ACNGT	1 cut(s)	243
HpyCH4IV	ACGT	1 cut(s)	143
HpyCH4V	TGCA	8 cut(s)	152, 297, 307, 445, 491, 521, 547, 727
HpyF3I	CTNAG	3 cut(s)	380, 474, 552
HpySE526I	ACGT	1 cut(s)	143
LweI	GCATC	1 cut(s)	746
MaeI	CTAG	1 cut(s)	236
MaeII	ACGT	1 cut(s)	143
MboII	GAAGA	2 cut(s)	92, 325
MlsI	TGGCCA	1 cut(s)	814
MluCI	AATT	6 cut(s)	23, 250, 385, 466, 484, 580
MluNI	TGGCCA	1 cut(s)	814
MlyI	GAGTC	1 cut(s)	544
MmeI	TCCRAC	1 cut(s)	453
MnlI	CCTC	6 cut(s)	61, 70, 225, 431, 469, 529
Mox20I	TGGCCA	1 cut(s)	814
Mph1103I	ATGCAT	2 cut(s)	447, 729
MscI	TGGCCA	1 cut(s)	814
MseI	TTAA	2 cut(s)	354, 791
Msp20I	TGGCCA	1 cut(s)	814
MspA1I	CMGCKG	1 cut(s)	379
MspI	CCGG	1 cut(s)	658
MspR9I	CCNGG	1 cut(s)	658
Mva1269I	GAATGC	2 cut(s)	729, 826
NciI	CCSGG	1 cut(s)	658
NcoI	CCATGG	1 cut(s)	188
NsiI	ATGCAT	2 cut(s)	447, 729
NspI	RCATGY	4 cut(s)	55, 124, 500, 521
PciI	ACATGT	2 cut(s)	51, 496
PctI	GAATGC	2 cut(s)	729, 826
PkrI	GCNGC	1 cut(s)	755
PleI	GAGTC	1 cut(s)	544
PpsI	GAGTC	1 cut(s)	544
PscI	ACATGT	2 cut(s)	51, 496
PspPI	GGNCC	2 cut(s)	396, 660
PvuII	CAGCTG	1 cut(s)	379
RsaI	GTAC	2 cut(s)	245, 655
RsaNI	GTAC	2 cut(s)	244, 654
SaqAI	TTAA	2 cut(s)	354, 791
SatI	GCNGC	1 cut(s)	754
Sau96I	GGNCC	2 cut(s)	396, 660
SchI	GAGTC	1 cut(s)	544
ScrFI	CCNGG	1 cut(s)	658
SfaNI	GCATC	1 cut(s)	746
SinI	GGWCC	1 cut(s)	660
Sse9I	AATT	6 cut(s)	23, 250, 385, 466, 484, 580
SsiI	CCGC	2 cut(s)	38, 753
SspMI	CTAG	1 cut(s)	236
StyD4I	CCNGG	1 cut(s)	656
StyI	CCWWGG	2 cut(s)	188, 809
TaaI	ACNGT	1 cut(s)	243
TaiI	ACGT	1 cut(s)	146
TaqI	TCGA	2 cut(s)	27, 66
TasI	AATT	6 cut(s)	23, 250, 385, 466, 484, 580
TatI	WGTACW	1 cut(s)	243
TauI	GCSGC	1 cut(s)	756
Tru1I	TTAA	2 cut(s)	354, 791
Tru9I	TTAA	2 cut(s)	354, 791
TscAI	CASTG	2 cut(s)	570, 822
TspDTI	ATGAA	4 cut(s)	57, 126, 359, 721
TspRI	CASTG	2 cut(s)	570, 822
VpaK11BI	GGWCC	1 cut(s)	660
XapI	RAATTY	2 cut(s)	385, 466
XceI	RCATGY	4 cut(s)	55, 124, 500, 521
XmiI	GTMKAC	1 cut(s)	417
XspI	CTAG	1 cut(s)	236
Zsp2I	ATGCAT	2 cut(s)	447, 729

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.