Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003717

Physical Location & Seq

Genomic Coordinates Forward (+)

15063151 .. 15068667

Gene Structure 5517 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G176900.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1323 bp

ATGTCTTACCAGCAGGCCTATCAATTCGATTATATGGGGGATGAGGGAGATATGTCTGATTTTGTCGAGGATGTGGAGGAAGAAAATCAGGGTGGAGATGCGGGTCTTGATGAATATGACATGCTTACCAAGATGTCTGATACGTCATCTGCACAAGCAAGAAAGGGAAAGGACATTCAAGGTATTCCATGGGACAGGTTAAACATAACGAGGGAAAAGTACAGATTGACAAGGCTAGAACAGTACAGGAATTATGAGAACATCCCTGCATCTGGGGAAGCTGTGGACAAGGAGTGCAAACAAATGCAGAAGGGTGGCAACTTTTATGAATTCTTCCATAATACAAGACTGGTTAAACCTACAATTCTTCATTTCCAGCTCAGAAATCTGGTTTGGGCTACTTCGAAACATGATGTCTATCTCATGTCCAGTTATTCAGTCATGCATTGGTCTTCTCTATCTGGCAGTTTGTCTGAGGTTCTCAACTTTGCAGGGCATGTAGCACCAACAGAGAAACATGCAGGTAGTTTATTGGAGGGTTTTATGCAGACTCAGATAAGCACACTGGCGGTCAAGGACAATTTTCTTGTTGCTGGTGGCTTCCAAGGAGAGCTTACTTGTAAGAGTCTTGATAAGCAAGGAGTAAGTTTCTGTACCCGGACCACATACGATGACAATGCCATCACAAATGCTGTTGAAATATATGATAGGCTGGGGGGTGGAATGCATTTCATGGCATCCAATAATGACTGTGGCATAAGAGAATATGACATGGAGAAATTTCAGCTTTTGAATCACTTTCGATTCCCTTGGCCAGTGAATCATACATCAATAAGCCCAGATCGTAGGGTTGTTGCCGTTGTTGGTGATCACGTAGATGCATTGCTAATGGATTCACAGAATGGGAAGACTATTGCCAAGGTTGTTGGTCATCTTGATTACTCTTTTGCTTCTGCATGGCATCCTGATGGTCGCATATTTGCCACTGGAAATCAGGACAAGACTTCTCGAGTTTGGGATATAAGAAATCTGTCCTCACCTATCGCAGTTCTGAAGAATAACTTGGGTGCTGCTCGATCAATTCGCTTTTCATCAGATGGCCAGTTCATGGTCGTTGCAGAACCTGCAGATTTTGTGCATATTTATAGTACAAAGGCAGATTACAAAGTGCGGCAGGAGATTGATTTCTTTGGGGAAATCTCGGGGGTATCAGTGAGTCCAGACGATGAGTCTCTGTATATAGGAATCTGGGATCGAACATATGCAAGCTTGCTACAGTATAACAGAAGGCATACATATGGATATCTTGATTCCTATTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

441

Amino Acids

49.93

Weight (kDa)

5.32

Isoelectric Point (pI)

38.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003717)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56190 AT5G56190 AT5G56190 AT5G56190 AT5G56190 AT5G56190 AT5G56190
fragaria_vesca	FvH4_4g12360 FvH4_4g12360 FvH4_4g12360 FvH4_4g12360 FvH4_4g12360 FvH4_4g12360 FvH4_4g12360 FvH4_4g12360
malus_domestica	MD04G1026800.v1.1 MD04G1027500.v1.1
prunus_persica	Prupe.1G176900_v2.0.a1 Prupe.1G176900_v2.0.a1 Prupe.1G176900_v2.0.a1
pyrus_communis	pycom04g02300 pycom04g02310 pycom04g02320
rosa_chinensis	RchiOBHm_Chr4g0410471
rosa_laevigata	RLG00000008427
rosa_multiflora	Rmu_sc0001067.1_g000001
rosa_roxburghii	Rroxscaffold_5G00355270
rosa_rugosa	Rorug04G0114500 Rorug04G0114600
rosa_samantha	Rh4AG160800 Rh4CG173000
rosa_wichuraiana	Rw0G014370 Rw4G013400 Rw4G037770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	512, 1132
AccB7I	CCANNNNNTGG	1 cut(s)	1108
AciI	CCGC	3 cut(s)	101, 569, 1171
AclWI	GGATC	1 cut(s)	1260
AcoI	YGGCCR	2 cut(s)	812, 1099
AcsI	RAATTY	2 cut(s)	329, 779
AcuI	CTGAAG	1 cut(s)	1073
AfaI	GTAC	4 cut(s)	221, 245, 655, 1150
AfiI	CCNNNNNNNGG	2 cut(s)	272, 1108
AgsI	TTSAA	3 cut(s)	179, 698, 793
AhdI	GACNNNNNGTC	1 cut(s)	1228
AjuI	GAANNNNNNNTTGG	4 cut(s)	376, 408, 1046, 1078
AluBI	AGCT	5 cut(s)	281, 379, 613, 787, 1269
AluI	AGCT	5 cut(s)	281, 379, 613, 787, 1269
Alw26I	GTCTC	1 cut(s)	1236
AlwI	GGATC	1 cut(s)	1260
AlwNI	CAGNNNCTG	1 cut(s)	1124
Ama87I	CYCGRG	2 cut(s)	1008, 1201
AoxI	GGCC	3 cut(s)	15, 812, 1099
ApeKI	GCWGC	1 cut(s)	1070
ApoI	RAATTY	2 cut(s)	329, 779
AspS9I	GGNCC	1 cut(s)	660
AsuC2I	CCSGG	1 cut(s)	658
AsuHPI	GGTGA	2 cut(s)	878, 1029
AsuII	TTCGAA	1 cut(s)	404
AvaI	CYCGRG	2 cut(s)	1008, 1201
AvaII	GGWCC	1 cut(s)	660
BalI	TGGCCA	2 cut(s)	814, 1101
BbsI	GAAGAC	2 cut(s)	444, 914
BbvI	GCAGC	1 cut(s)	1057
BccI	CCATC	3 cut(s)	689, 962, 1091
BceAI	ACGGC	1 cut(s)	842
BcgI	CGANNNNNNTGC	2 cut(s)	659, 693
BclI	TGATCA	1 cut(s)	868
BcnI	CCSGG	1 cut(s)	658
BcoDI	GTCTC	1 cut(s)	1236
BfaI	CTAG	1 cut(s)	236
BfmI	CTRYAG	2 cut(s)	1125, 1274
BfuAI	ACCTGC	2 cut(s)	512, 1132
BisI	GCNGC	2 cut(s)	1071, 1172
BlsI	GCNGC	2 cut(s)	1072, 1173
Bme1390I	CCNGG	1 cut(s)	658
Bme18I	GGWCC	1 cut(s)	660
BmeRI	GACNNNNNGTC	1 cut(s)	1228
BmeT110I	CYCGRG	2 cut(s)	1008, 1201
BmgT120I	GGNCC	1 cut(s)	660
BmrFI	CCNGG	1 cut(s)	658
BmsI	GCATC	5 cut(s)	88, 278, 746, 868, 970
BpiI	GAAGAC	2 cut(s)	444, 914
Bpu14I	TTCGAA	1 cut(s)	404
BpuMI	CCSGG	1 cut(s)	658
BsaAI	YACGTR	1 cut(s)	874
BsaBI	GATNNNNATC	1 cut(s)	417
BsaJI	CCNNGG	4 cut(s)	188, 604, 809, 918
Bsc4I	CCNNNNNNNGG	2 cut(s)	272, 1108
Bse1I	ACTGG	6 cut(s)	354, 429, 570, 815, 991, 1102
Bse3DI	GCAATG	1 cut(s)	881
Bse8I	GATNNNNATC	1 cut(s)	417
BseDI	CCNNGG	4 cut(s)	188, 604, 809, 918
BseGI	GGATG	5 cut(s)	46, 76, 261, 737, 961
BseJI	GATNNNNATC	1 cut(s)	417
BseLI	CCNNNNNNNGG	2 cut(s)	272, 1108
BseMI	GCAATG	1 cut(s)	881
BseMII	CTCAG	3 cut(s)	394, 465, 566
BseNI	ACTGG	6 cut(s)	354, 429, 570, 815, 991, 1102
BseXI	GCAGC	1 cut(s)	1057
BseYI	CCCAGC	1 cut(s)	712
BsgI	GTGCAG	1 cut(s)	135
BshFI	GGCC	3 cut(s)	17, 814, 1101
BsiHKCI	CYCGRG	2 cut(s)	1008, 1201
BsiSI	CCGG	1 cut(s)	658
BslFI	GGGAC	1 cut(s)	206
BslI	CCNNNNNNNGG	2 cut(s)	272, 1108
BsmAI	GTCTC	1 cut(s)	1236
BsmFI	GGGAC	1 cut(s)	206
BsmI	GAATGC	1 cut(s)	729
BsnI	GGCC	3 cut(s)	17, 814, 1101
BsoBI	CYCGRG	2 cut(s)	1008, 1201
Bsp119I	TTCGAA	1 cut(s)	404
Bsp143I	GATC	4 cut(s)	841, 868, 1076, 1252
Bsp19I	CCATGG	1 cut(s)	188
BspACI	CCGC	3 cut(s)	101, 569, 1171
BspANI	GGCC	3 cut(s)	17, 814, 1101
BspCNI	CTCAG	3 cut(s)	393, 466, 565
BspMAI	CTGCAG	1 cut(s)	1129
BspMI	ACCTGC	2 cut(s)	512, 1132
BspPI	GGATC	1 cut(s)	1260
BspT104I	TTCGAA	1 cut(s)	404
BsrDI	GCAATG	1 cut(s)	881
BsrI	ACTGG	6 cut(s)	354, 429, 570, 815, 991, 1102
BssECI	CCNNGG	4 cut(s)	188, 604, 809, 918
BssMI	GATC	4 cut(s)	841, 868, 1076, 1252
BssT1I	CCWWGG	4 cut(s)	188, 604, 809, 918
Bst4CI	ACNGT	3 cut(s)	243, 752, 1278
BstAPI	GCANNNNNTGC	1 cut(s)	1124
BstBAI	YACGTR	1 cut(s)	874
BstBI	TTCGAA	1 cut(s)	404
BstC8I	GCNNGC	3 cut(s)	15, 1267, 1271
BstDEI	CTNAG	3 cut(s)	380, 474, 552
BstDSI	CCRYGG	1 cut(s)	188
BstF5I	GGATG	5 cut(s)	46, 76, 261, 737, 961
BstKTI	GATC	4 cut(s)	844, 871, 1079, 1255
BstMAI	GTCTC	1 cut(s)	1236
BstMBI	GATC	4 cut(s)	841, 868, 1076, 1252
BstMWI	GCNNNNNNNGC	1 cut(s)	1124
BstNSI	RCATGY	3 cut(s)	124, 500, 521
BstSCI	CCNGG	1 cut(s)	656
BstSFI	CTRYAG	2 cut(s)	1125, 1274
BstV1I	GCAGC	1 cut(s)	1057
BstV2I	GAAGAC	2 cut(s)	444, 914
BsuRI	GGCC	3 cut(s)	17, 814, 1101
BtgI	CCRYGG	1 cut(s)	188
BtsCI	GGATG	5 cut(s)	46, 76, 261, 737, 961
BtsIMutI	CAGTG	4 cut(s)	563, 822, 984, 1218
BveI	ACCTGC	2 cut(s)	512, 1132
Cac8I	GCNNGC	3 cut(s)	15, 1267, 1271
CaiI	CAGNNNCTG	1 cut(s)	1124
Cfr13I	GGNCC	1 cut(s)	660
Csp6I	GTAC	4 cut(s)	220, 244, 654, 1149
CviQI	GTAC	4 cut(s)	220, 244, 654, 1149
DdeI	CTNAG	3 cut(s)	380, 474, 552
DpnI	GATC	4 cut(s)	843, 870, 1078, 1254
DpnII	GATC	4 cut(s)	841, 868, 1076, 1252
DriI	GACNNNNNGTC	1 cut(s)	1228
EaeI	YGGCCR	2 cut(s)	812, 1099
Eam1105I	GACNNNNNGTC	1 cut(s)	1228
Eco130I	CCWWGG	4 cut(s)	188, 604, 809, 918
Eco147I	AGGCCT	1 cut(s)	17
Eco32I	GATATC	1 cut(s)	1304
Eco47I	GGWCC	1 cut(s)	660
Eco57I	CTGAAG	1 cut(s)	1073
Eco88I	CYCGRG	2 cut(s)	1008, 1201
EcoRI	GAATTC	1 cut(s)	329
EcoRV	GATATC	1 cut(s)	1304
EcoT14I	CCWWGG	4 cut(s)	188, 604, 809, 918
EcoT22I	ATGCAT	3 cut(s)	447, 729, 883
ErhI	CCWWGG	4 cut(s)	188, 604, 809, 918
FalI	AAGNNNNNCTT	4 cut(s)	597, 629, 1046, 1078
FaqI	GGGAC	1 cut(s)	206
FauI	CCCGC	1 cut(s)	94
FauNDI	CATATG	2 cut(s)	1261, 1297
FbaI	TGATCA	1 cut(s)	868
Fnu4HI	GCNGC	2 cut(s)	1071, 1172
FokI	GGATG	5 cut(s)	53, 83, 248, 724, 948
Fsp4HI	GCNGC	2 cut(s)	1071, 1172
FspBI	CTAG	1 cut(s)	236
GluI	GCNGC	2 cut(s)	1071, 1172
GsaI	CCCAGC	1 cut(s)	716
HaeIII	GGCC	3 cut(s)	17, 814, 1101
HapII	CCGG	1 cut(s)	658
HindIII	AAGCTT	1 cut(s)	1267
HpaII	CCGG	1 cut(s)	658
HphI	GGTGA	2 cut(s)	878, 1029
Hpy166II	GTNNAC	1 cut(s)	286
Hpy188I	TCNGA	7 cut(s)	58, 139, 383, 475, 555, 1053, 1096
Hpy188III	TCNNGA	8 cut(s)	107, 629, 935, 965, 995, 1008, 1220, 1307
Hpy8I	GTNNAC	1 cut(s)	286
HpyAV	CCTTC	2 cut(s)	304, 1281
HpyCH4III	ACNGT	3 cut(s)	243, 752, 1278
HpyCH4IV	ACGT	2 cut(s)	143, 873
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1124
HpyF3I	CTNAG	3 cut(s)	380, 474, 552
HpySE526I	ACGT	2 cut(s)	143, 873
Ksp22I	TGATCA	1 cut(s)	868
Kzo9I	GATC	4 cut(s)	841, 868, 1076, 1252
Lsp1109I	GCAGC	1 cut(s)	1057
LweI	GCATC	5 cut(s)	88, 278, 746, 868, 970
MaeI	CTAG	1 cut(s)	236
MaeII	ACGT	2 cut(s)	143, 873
MalI	GATC	4 cut(s)	843, 870, 1078, 1254
MboI	GATC	4 cut(s)	841, 868, 1076, 1252
MboII	GAAGA	6 cut(s)	92, 325, 359, 444, 919, 1066
MlsI	TGGCCA	2 cut(s)	814, 1101
MluCI	AATT	7 cut(s)	23, 250, 329, 363, 580, 779, 1080
MluNI	TGGCCA	2 cut(s)	814, 1101
MlyI	GAGTC	4 cut(s)	544, 634, 1225, 1238
MnlI	CCTC	7 cut(s)	37, 61, 70, 204, 469, 529, 1045
Mox20I	TGGCCA	2 cut(s)	814, 1101
Mph1103I	ATGCAT	3 cut(s)	447, 729, 883
MscI	TGGCCA	2 cut(s)	814, 1101
MseI	TTAA	3 cut(s)	200, 354, 1321
MslI	CAYNNNNRTG	3 cut(s)	876, 966, 1296
Msp20I	TGGCCA	2 cut(s)	814, 1101
MspI	CCGG	1 cut(s)	658
MspR9I	CCNGG	1 cut(s)	658
Mva1269I	GAATGC	1 cut(s)	729
MwoI	GCNNNNNNNGC	1 cut(s)	1124
NciI	CCSGG	1 cut(s)	658
NcoI	CCATGG	1 cut(s)	188
NdeI	CATATG	2 cut(s)	1261, 1297
NdeII	GATC	4 cut(s)	841, 868, 1076, 1252
NsiI	ATGCAT	3 cut(s)	447, 729, 883
NspI	RCATGY	3 cut(s)	124, 500, 521
NspV	TTCGAA	1 cut(s)	404
PaeR7I	CTCGAG	1 cut(s)	1008
PceI	AGGCCT	1 cut(s)	17
PctI	GAATGC	1 cut(s)	729
PfeI	GAWTC	6 cut(s)	793, 804, 820, 893, 1245, 1310
PflMI	CCANNNNNTGG	1 cut(s)	1108
PkrI	GCNGC	2 cut(s)	1072, 1173
PleI	GAGTC	4 cut(s)	544, 633, 1224, 1237
PpsI	GAGTC	4 cut(s)	544, 633, 1224, 1237
Ppu21I	YACGTR	1 cut(s)	874
PspFI	CCCAGC	1 cut(s)	712
PspPI	GGNCC	1 cut(s)	660
PstI	CTGCAG	1 cut(s)	1129
PstNI	CAGNNNCTG	1 cut(s)	1124
RsaI	GTAC	4 cut(s)	221, 245, 655, 1150
RsaNI	GTAC	4 cut(s)	220, 244, 654, 1149
RseI	CAYNNNNRTG	3 cut(s)	876, 966, 1296
SaqAI	TTAA	3 cut(s)	200, 354, 1321
SatI	GCNGC	2 cut(s)	1071, 1172
Sau3AI	GATC	4 cut(s)	841, 868, 1076, 1252
Sau96I	GGNCC	1 cut(s)	660
SchI	GAGTC	4 cut(s)	544, 634, 1225, 1238
ScrFI	CCNGG	1 cut(s)	658
SfaNI	GCATC	5 cut(s)	88, 278, 746, 868, 970
SfcI	CTRYAG	2 cut(s)	1125, 1274
Sfr274I	CTCGAG	1 cut(s)	1008
SfuI	TTCGAA	1 cut(s)	404
SinI	GGWCC	1 cut(s)	660
SlaI	CTCGAG	1 cut(s)	1008
SmiMI	CAYNNNNRTG	3 cut(s)	876, 966, 1296
SmlI	CTYRAG	1 cut(s)	1008
SmoI	CTYRAG	1 cut(s)	1008
Sse9I	AATT	7 cut(s)	23, 250, 329, 363, 580, 779, 1080
SseBI	AGGCCT	1 cut(s)	17
SsiI	CCGC	3 cut(s)	101, 569, 1171
SspMI	CTAG	1 cut(s)	236
StuI	AGGCCT	1 cut(s)	17
StyD4I	CCNGG	1 cut(s)	656
StyI	CCWWGG	4 cut(s)	188, 604, 809, 918
TaaI	ACNGT	3 cut(s)	243, 752, 1278
TaiI	ACGT	2 cut(s)	146, 876
TaqI	TCGA	7 cut(s)	27, 66, 404, 802, 1009, 1075, 1255
TasI	AATT	7 cut(s)	23, 250, 329, 363, 580, 779, 1080
TatI	WGTACW	3 cut(s)	219, 243, 1148
TauI	GCSGC	1 cut(s)	1174
TfiI	GAWTC	6 cut(s)	793, 804, 820, 893, 1245, 1310
Tru1I	TTAA	3 cut(s)	200, 354, 1321
Tru9I	TTAA	3 cut(s)	200, 354, 1321
TscAI	CASTG	4 cut(s)	570, 822, 991, 1218
TseI	GCWGC	1 cut(s)	1070
TspDTI	ATGAA	6 cut(s)	126, 342, 359, 721, 1080, 1096
TspRI	CASTG	4 cut(s)	570, 822, 991, 1218
Van91I	CCANNNNNTGG	1 cut(s)	1108
VpaK11BI	GGWCC	1 cut(s)	660
XapI	RAATTY	2 cut(s)	329, 779
XceI	RCATGY	3 cut(s)	124, 500, 521
XhoI	CTCGAG	1 cut(s)	1008
XspI	CTAG	1 cut(s)	236
Zsp2I	ATGCAT	3 cut(s)	447, 729, 883

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.