Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0012488

Physical Location & Seq

Genomic Coordinates Reverse (-)

18493455 .. 18496841

Gene Structure 3387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g14860.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGGCATCTTTCGCTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGATCATAACCCAATACCCTTCTGGACTCCGTCGCCGTCTGCAGCTGCTTTTCCTGACGAAGAAGACTCGTGCAGTATCTGCCTCGAGCCTTTCTGCTCCGATGACCCCTCCACTATTACCAGCTGCAAACATGACTATCATCTTCACTGTATATTAGAATGGTCACAAAGAAGTAAAGAATGCCCAATTTGTTGGCAGTTACTTGTCTTGAAGGATCCGGCTAGCCAAGGGCTTCTAGATGCTGTACAAAATGAGAAGCGCTCAAGGGCAAGAAACATATCTTCTATTGCTCCCCCAACTTTTCACAATTCCTCTGAGGACTTTGACTTTGAACATGATTCGTTCTCAGATGACTCCGATTTGGACGAGCGTATTATGCAGCATCTTGCTGCTGCTTCTAGCAGGGCTCGTTATGCACGCAGAAGGGAAAGACAGAGATATTCGGGACTGGCCCCTTCCAATGGATTTAATTTTTCCCATGCTGAAAATGTGTCTGCTTTGGAGCAAGCACACCCAACTTCTCCTGAAGAACGTCCTAGTTTCACTTATGGTTCACCAGGAGGTGATTCACCAACTTCTCCAAGACCACACGTTGTTCAACCTCCACCATCTTTTATCTGCAGCACTGCTGCCAACAATGATGTTCCTTTCAAACCAAGAGTTCTCTTTGGCCAGCCAACACCTAATGGTTCACAGGGACAAATCCCATCCGAGATGCTAAATTTCCCAGAGTCTATCAAGTCCAAGCTGTCTGCTGCTTCAGTCAGGTACAAAGAGTCCATCTCAAAAGGAACTCGAGGTTTGAAGGAAAAGCTGTTTGCTCGTAACAACTCAGTCAAGGAGCTTAGCAAAGGAGTTCAACGTGAGATGACTGCAGGAATTGCTGGTGTTGCACGAATGTTTGAGCGCCTAGACCTTACCTCAAAGAATCCTGGTTCCCCTACGCCAGTTTCTGATCGTAGCGGGGGTACTTCAAACTTCTCTGCCAAGGGAAAGGCTGTGTTAGAAAATGTGATTGTTCAGTGTTGCAATAAAAGCAGTGGAAGAATTTCTGATGAAACTTCAGAAGCACCCTCTCACATCATCAGGCCGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009553 GO:0009555 GO:0009561 GO:0009987 GO:0010498 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0051603 GO:0051726 GO:0055046 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_2 zf-RING_2 zf-rbx1

Protein Analysis

382

Amino Acids

41.51

Weight (kDa)

6.42

Isoelectric Point (pI)

60.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	38 - 80	6.8e-10	Ring finger domain
zf-rbx1	PF12678	38 - 80	1.4e-06	RING-H2 zinc finger domain
zf-C3HC4_2	PF13923	40 - 80	8.4e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012488)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14220
fragaria_vesca	FvH4_4g14860
malus_domestica	MD13G1185900.v1.1 MD16G1186700.v1.1
prunus_persica	Prupe.1G153500_v2.0.a1
pyrus_communis	pycom13g16040 pycom16g15650
rosa_chinensis	RchiOBHm_Chr4g0417351 RchiOBHm_Chr4g0417381
rosa_laevigata	RLG00000007915
rosa_multiflora	Rmu_co8127690.1_g000001 Rmu_sc0004142.1_g000031
rosa_roxburghii	Rroxscaffold_5G00361110
rosa_rugosa	Rorug04G0147200
rosa_samantha	Rh4AG210700 Rh4BG211200 Rh4CG221600 Rh4DG208600
rosa_wichuraiana	Rw4G017800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	1011
AclWI	GGATC	2 cut(s)	257, 270
AcoI	YGGCCR	1 cut(s)	718
AcsI	RAATTY	2 cut(s)	769, 1095
AcuI	CTGAAG	3 cut(s)	594, 792, 1095
AfaI	GTAC	3 cut(s)	294, 818, 1018
AfeI	AGCGCT	1 cut(s)	308
AfiI	CCNNNNNNNGG	1 cut(s)	509
AflIII	ACRYGT	1 cut(s)	637
AgsI	TTSAA	7 cut(s)	259, 380, 647, 700, 853, 908, 1023
AjnI	CCWGG	2 cut(s)	604, 979
AluBI	AGCT	5 cut(s)	92, 171, 796, 862, 892
AluI	AGCT	5 cut(s)	92, 171, 796, 862, 892
AlwI	GGATC	2 cut(s)	257, 270
AlwNI	CAGNNNCTG	2 cut(s)	126, 1001
Ama87I	CYCGRG	2 cut(s)	131, 843
Aor51HI	AGCGCT	1 cut(s)	308
AoxI	GGCC	3 cut(s)	498, 718, 1136
ApeKI	GCWGC	9 cut(s)	89, 92, 171, 427, 437, 440, 669, 677, 803
ApoI	RAATTY	2 cut(s)	769, 1095
ArsI	GACNNNNNNTTYG	2 cut(s)	359, 391
Asp700I	GAANNNNTTC	1 cut(s)	1096
AspLEI	GCGC	2 cut(s)	309, 957
AspS9I	GGNCC	1 cut(s)	499
AsuHPI	GGTGA	3 cut(s)	594, 609, 623
AsuNHI	GCTAGC	1 cut(s)	269
AvaI	CYCGRG	2 cut(s)	131, 843
BalI	TGGCCA	1 cut(s)	720
BamHI	GGATCC	1 cut(s)	262
BanII	GRGCYC	1 cut(s)	457
BauI	CACGAG	1 cut(s)	115
BbsI	GAAGAC	1 cut(s)	117
BbvI	GCAGC	9 cut(s)	79, 101, 158, 424, 427, 439, 664, 681, 790
BccI	CCATC	3 cut(s)	664, 763, 836
BceAI	ACGGC	1 cut(s)	67
BciT130I	CCWGG	2 cut(s)	606, 981
BclI	TGATCA	1 cut(s)	49
BfaI	CTAG	5 cut(s)	270, 284, 447, 585, 959
BfmI	CTRYAG	3 cut(s)	87, 667, 921
BfoI	RGCGCY	2 cut(s)	310, 958
BisI	GCNGC	9 cut(s)	90, 93, 172, 428, 438, 441, 670, 678, 804
BlpI	GCTNAGC	1 cut(s)	893
BlsI	GCNGC	9 cut(s)	91, 94, 173, 429, 439, 442, 671, 679, 805
Bme1390I	CCNGG	2 cut(s)	606, 981
BmeT110I	CYCGRG	2 cut(s)	131, 843
BmgT120I	GGNCC	1 cut(s)	499
BmiI	GGNNCC	3 cut(s)	264, 501, 985
BmrFI	CCNGG	2 cut(s)	606, 981
BmsI	GCATC	4 cut(s)	14, 277, 439, 753
BmtI	GCTAGC	1 cut(s)	273
BpiI	GAAGAC	1 cut(s)	117
BplI	GAGNNNNNCTC	4 cut(s)	293, 325, 815, 847
Bpu1102I	GCTNAGC	1 cut(s)	893
BpuEI	CTTGAG	1 cut(s)	295
BsaJI	CCNNGG	2 cut(s)	274, 1035
Bsc4I	CCNNNNNNNGG	1 cut(s)	509
Bse1I	ACTGG	2 cut(s)	501, 995
BseBI	CCWGG	2 cut(s)	606, 981
BseDI	CCNNGG	2 cut(s)	274, 1035
BseGI	GGATG	1 cut(s)	755
BseLI	CCNNNNNNNGG	1 cut(s)	509
BseMII	CTCAG	3 cut(s)	354, 408, 894
BseNI	ACTGG	2 cut(s)	501, 995
BseXI	GCAGC	9 cut(s)	79, 101, 158, 424, 427, 439, 664, 681, 790
BsgI	GTGCAG	1 cut(s)	139
BshFI	GGCC	3 cut(s)	500, 720, 1138
BsiHKCI	CYCGRG	2 cut(s)	131, 843
BsiSI	CCGG	1 cut(s)	266
BslFI	GGGAC	2 cut(s)	507, 759
BslI	CCNNNNNNNGG	1 cut(s)	509
BsmFI	GGGAC	2 cut(s)	507, 759
BsmI	GAATGC	1 cut(s)	233
BsnI	GGCC	3 cut(s)	500, 720, 1138
BsoBI	CYCGRG	2 cut(s)	131, 843
Bsp1286I	GDGCHC	1 cut(s)	457
Bsp1407I	TGTACA	1 cut(s)	292
Bsp143I	GATC	3 cut(s)	49, 262, 1003
Bsp1720I	GCTNAGC	1 cut(s)	893
BspACI	CCGC	1 cut(s)	1011
BspANI	GGCC	3 cut(s)	500, 720, 1138
BspCNI	CTCAG	3 cut(s)	355, 407, 893
BspLI	GGNNCC	3 cut(s)	264, 501, 985
BspMAI	CTGCAG	3 cut(s)	91, 671, 925
BspOI	GCTAGC	1 cut(s)	273
BspPI	GGATC	2 cut(s)	257, 270
BsrGI	TGTACA	1 cut(s)	292
BsrI	ACTGG	2 cut(s)	501, 995
BssECI	CCNNGG	2 cut(s)	274, 1035
BssMI	GATC	3 cut(s)	49, 262, 1003
BssSI	CACGAG	1 cut(s)	115
BssT1I	CCWWGG	2 cut(s)	274, 1035
Bst2BI	CACGAG	1 cut(s)	115
Bst2UI	CCWGG	2 cut(s)	606, 981
Bst4CI	ACNGT	1 cut(s)	197
BstAPI	GCANNNNNTGC	2 cut(s)	126, 929
BstAUI	TGTACA	1 cut(s)	292
BstC8I	GCNNGC	4 cut(s)	271, 466, 555, 722
BstDEI	CTNAG	4 cut(s)	363, 394, 880, 893
BstF5I	GGATG	1 cut(s)	755
BstH2I	RGCGCY	2 cut(s)	310, 958
BstHHI	GCGC	2 cut(s)	309, 957
BstKTI	GATC	3 cut(s)	52, 265, 1006
BstMBI	GATC	3 cut(s)	49, 262, 1003
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 126, 424, 461, 929, 938, 1083
BstNI	CCWGG	2 cut(s)	606, 981
BstSCI	CCNGG	2 cut(s)	604, 979
BstSFI	CTRYAG	3 cut(s)	87, 667, 921
BstV1I	GCAGC	9 cut(s)	79, 101, 158, 424, 427, 439, 664, 681, 790
BstV2I	GAAGAC	1 cut(s)	117
BstX2I	RGATCY	1 cut(s)	262
BstXI	CCANNNNNNTGG	1 cut(s)	240
BstYI	RGATCY	1 cut(s)	262
BsuRI	GGCC	3 cut(s)	500, 720, 1138
BtsCI	GGATG	1 cut(s)	755
BtsI	GCAGTG	2 cut(s)	672, 1093
BtsIMutI	CAGTG	4 cut(s)	193, 672, 1076, 1093
Cac8I	GCNNGC	4 cut(s)	271, 466, 555, 722
CaiI	CAGNNNCTG	2 cut(s)	126, 1001
CfoI	GCGC	2 cut(s)	309, 957
Cfr13I	GGNCC	1 cut(s)	499
Csp6I	GTAC	3 cut(s)	293, 817, 1017
CviAII	CATG	3 cut(s)	179, 383, 527
CviQI	GTAC	3 cut(s)	293, 817, 1017
DdeI	CTNAG	4 cut(s)	363, 394, 880, 893
DpnI	GATC	3 cut(s)	51, 264, 1005
DpnII	GATC	3 cut(s)	49, 262, 1003
EaeI	YGGCCR	1 cut(s)	718
Eco130I	CCWWGG	2 cut(s)	274, 1035
Eco24I	GRGCYC	1 cut(s)	457
Eco47III	AGCGCT	1 cut(s)	308
Eco57I	CTGAAG	3 cut(s)	594, 792, 1095
Eco88I	CYCGRG	2 cut(s)	131, 843
EcoRII	CCWGG	2 cut(s)	604, 979
EcoT14I	CCWWGG	2 cut(s)	274, 1035
EcoT38I	GRGCYC	1 cut(s)	457
ErhI	CCWWGG	2 cut(s)	274, 1035
FaeI	CATG	3 cut(s)	182, 386, 530
FaiI	YATR	9 cut(s)	54, 180, 200, 326, 384, 425, 462, 528, 597
FaqI	GGGAC	2 cut(s)	507, 759
FatI	CATG	3 cut(s)	178, 382, 526
FauI	CCCGC	1 cut(s)	1004
FbaI	TGATCA	1 cut(s)	49
Fnu4HI	GCNGC	9 cut(s)	90, 93, 172, 428, 438, 441, 670, 678, 804
FokI	GGATG	1 cut(s)	742
FriOI	GRGCYC	1 cut(s)	457
Fsp4HI	GCNGC	9 cut(s)	90, 93, 172, 428, 438, 441, 670, 678, 804
FspBI	CTAG	5 cut(s)	270, 284, 447, 585, 959
GlaI	GCGC	2 cut(s)	308, 956
GluI	GCNGC	9 cut(s)	90, 93, 172, 428, 438, 441, 670, 678, 804
HaeII	RGCGCY	2 cut(s)	310, 958
HaeIII	GGCC	3 cut(s)	500, 720, 1138
HapII	CCGG	1 cut(s)	266
HhaI	GCGC	2 cut(s)	309, 957
Hin1II	CATG	3 cut(s)	182, 386, 530
Hin6I	GCGC	2 cut(s)	307, 955
HinP1I	GCGC	2 cut(s)	307, 955
HinfI	GANTC	8 cut(s)	73, 113, 386, 401, 614, 779, 824, 976
HpaII	CCGG	1 cut(s)	266
HphI	GGTGA	3 cut(s)	594, 609, 623
Hpy166II	GTNNAC	2 cut(s)	602, 740
Hpy188I	TCNGA	9 cut(s)	49, 148, 364, 397, 406, 760, 1003, 1102, 1114
Hpy188III	TCNNGA	6 cut(s)	70, 101, 256, 284, 492, 572
Hpy8I	GTNNAC	2 cut(s)	602, 740
Hpy99I	CGWCG	1 cut(s)	82
HpyAV	CCTTC	6 cut(s)	27, 76, 253, 465, 513, 847
HpyCH4III	ACNGT	1 cut(s)	197
HpyCH4IV	ACGT	3 cut(s)	580, 639, 910
HpyCH4V	TGCA	9 cut(s)	89, 120, 174, 427, 464, 669, 923, 941, 1077
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 126, 424, 461, 929, 938, 1083
HpyF3I	CTNAG	4 cut(s)	363, 394, 880, 893
HpySE526I	ACGT	3 cut(s)	580, 639, 910
Hsp92II	CATG	3 cut(s)	182, 386, 530
HspAI	GCGC	2 cut(s)	307, 955
Ksp22I	TGATCA	1 cut(s)	49
Kzo9I	GATC	3 cut(s)	49, 262, 1003
LmnI	GCTCC	5 cut(s)	19, 149, 343, 550, 889
Lsp1109I	GCAGC	9 cut(s)	79, 101, 158, 424, 427, 439, 664, 681, 790
LweI	GCATC	4 cut(s)	14, 277, 439, 753
MaeI	CTAG	5 cut(s)	270, 284, 447, 585, 959
MaeII	ACGT	3 cut(s)	580, 639, 910
MaeIII	GTNAC	3 cut(s)	210, 246, 872
MalI	GATC	3 cut(s)	51, 264, 1005
MboI	GATC	3 cut(s)	49, 262, 1003
MflI	RGATCY	1 cut(s)	262
MhlI	GDGCHC	1 cut(s)	457
MlsI	TGGCCA	1 cut(s)	720
MluCI	AATT	6 cut(s)	234, 355, 517, 769, 927, 1095
MluNI	TGGCCA	1 cut(s)	720
MlyI	GAGTC	5 cut(s)	67, 107, 395, 788, 833
MnlI	CCTC	9 cut(s)	140, 166, 358, 370, 602, 660, 839, 979, 1132
Mox20I	TGGCCA	1 cut(s)	720
MroXI	GAANNNNTTC	1 cut(s)	1096
MscI	TGGCCA	1 cut(s)	720
MseI	TTAA	1 cut(s)	516
Msp20I	TGGCCA	1 cut(s)	720
MspA1I	CMGCKG	2 cut(s)	92, 171
MspI	CCGG	1 cut(s)	266
MspR9I	CCNGG	2 cut(s)	606, 981
Mva1269I	GAATGC	1 cut(s)	233
MvaI	CCWGG	2 cut(s)	606, 981
MwoI	GCNNNNNNNGC	7 cut(s)	11, 126, 424, 461, 929, 938, 1083
NdeII	GATC	3 cut(s)	49, 262, 1003
NheI	GCTAGC	1 cut(s)	269
NlaIII	CATG	3 cut(s)	182, 386, 530
NlaIV	GGNNCC	3 cut(s)	264, 501, 985
NmuCI	GTSAC	1 cut(s)	210
PaeR7I	CTCGAG	2 cut(s)	131, 843
PctI	GAATGC	1 cut(s)	233
PdmI	GAANNNNTTC	1 cut(s)	1096
PfeI	GAWTC	3 cut(s)	386, 614, 976
PflFI	GACNNNGTC	1 cut(s)	76
PkrI	GCNGC	9 cut(s)	91, 94, 173, 429, 439, 442, 671, 679, 805
PleI	GAGTC	5 cut(s)	67, 107, 395, 787, 832
PpsI	GAGTC	5 cut(s)	67, 107, 395, 787, 832
Psp6I	CCWGG	2 cut(s)	604, 979
PspGI	CCWGG	2 cut(s)	604, 979
PspN4I	GGNNCC	3 cut(s)	264, 501, 985
PspPI	GGNCC	1 cut(s)	499
PspXI	VCTCGAGB	2 cut(s)	131, 843
PstI	CTGCAG	3 cut(s)	91, 671, 925
PstNI	CAGNNNCTG	2 cut(s)	126, 1001
PsuI	RGATCY	1 cut(s)	262
PsyI	GACNNNGTC	1 cut(s)	76
PvuII	CAGCTG	2 cut(s)	92, 171
RsaI	GTAC	3 cut(s)	294, 818, 1018
RsaNI	GTAC	3 cut(s)	293, 817, 1017
SaqAI	TTAA	1 cut(s)	516
SatI	GCNGC	9 cut(s)	90, 93, 172, 428, 438, 441, 670, 678, 804
Sau3AI	GATC	3 cut(s)	49, 262, 1003
Sau96I	GGNCC	1 cut(s)	499
SchI	GAGTC	5 cut(s)	67, 107, 395, 788, 833
ScrFI	CCNGG	2 cut(s)	606, 981
SduI	GDGCHC	1 cut(s)	457
SfaNI	GCATC	4 cut(s)	14, 277, 439, 753
SfcI	CTRYAG	3 cut(s)	87, 667, 921
Sfr274I	CTCGAG	2 cut(s)	131, 843
SlaI	CTCGAG	2 cut(s)	131, 843
SmlI	CTYRAG	3 cut(s)	131, 310, 843
SmoI	CTYRAG	3 cut(s)	131, 310, 843
Sse9I	AATT	6 cut(s)	234, 355, 517, 769, 927, 1095
SsiI	CCGC	1 cut(s)	1011
SspMI	CTAG	5 cut(s)	270, 284, 447, 585, 959
StyD4I	CCNGG	2 cut(s)	604, 979
StyI	CCWWGG	2 cut(s)	274, 1035
TaaI	ACNGT	1 cut(s)	197
TaiI	ACGT	3 cut(s)	583, 642, 913
TaqI	TCGA	2 cut(s)	132, 844
TasI	AATT	6 cut(s)	234, 355, 517, 769, 927, 1095
TatI	WGTACW	1 cut(s)	292
TfiI	GAWTC	3 cut(s)	386, 614, 976
Tru1I	TTAA	1 cut(s)	516
Tru9I	TTAA	1 cut(s)	516
TscAI	CASTG	4 cut(s)	200, 679, 1076, 1093
TseFI	GTSAC	1 cut(s)	210
TseI	GCWGC	9 cut(s)	89, 92, 171, 427, 437, 440, 669, 677, 803
Tsp45I	GTSAC	1 cut(s)	210
TspDTI	ATGAA	1 cut(s)	1119
TspGWI	ACGGA	1 cut(s)	66
TspRI	CASTG	4 cut(s)	200, 679, 1076, 1093
Tth111I	GACNNNGTC	1 cut(s)	76
XapI	RAATTY	2 cut(s)	769, 1095
XbaI	TCTAGA	1 cut(s)	283
XcmI	CCANNNNNNNNNTGG	1 cut(s)	66
XhoI	CTCGAG	2 cut(s)	131, 843
XmnI	GAANNNNTTC	1 cut(s)	1096
XspI	CTAG	5 cut(s)	270, 284, 447, 585, 959

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.