Prupe.1G153500_v2.0.a1

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
12097153 .. 12100741
3589 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G153500.1

Sequence Viewer

Length: 1161 bp
ATGGCCTCTTTCGCTCCCTCTTCTTCTCTGAATCCGAAACCCGTTTCAGCTCTATCTTTTTCTTCTCCAGATGTTGTTGATGACAGCTATGAAGACTCCTGCAGTATCTGCCTTGAGCCTTTCAACTGCGATGACCCAGCCACTATTACCAGCTGCAAACATGAATATCATCTTCACTGTATTTTAGAATGGTCACAAAGAAGTAAAGAATGCCCAATTTGTTGGCAGTTACTTGTCTTGAAGGATCCCGCTTGTCAAGGGCTTCTAGATGCTGTACAAAATGAGACGCGCTCAAGATCCAGAAAAATATCTTCCACGGCCCCCCAGACTTTTCAACATTCCTATGAGGACTTTGATGTTGAGCACGACTCTTTCTCAGATGACTCTGATTTGGATGAGCGTATTATGCAGCATCTTGCTGCTGCTTCAAGCAGAGCTCGTTACATTCGCAGACGGGAAAAACAGAGATCTTCTGGCCTAGGTCCTTCCCATGTTTTTATTTTCTCCCCTCATGAAAATGGGAGTGGTATGCAGCAAACATACCCAACGTCTCCAGAAGAATGCCAAAGTTATGGGTCACCCAGAGGTGATTCACCAACTTCTCAAAGGCCACCTGTTATTCAACCTCCACCATCTTTTATCTGCAGCACTGCCGCCAATAATGATGTTCCTTACAAACCAAGAGTGCTTTATGGCCAGTCATCACCTGATGGTCCACGCAGACAAAGCCCATCTGAGATGATCAATTTGCCTGAGTCTATCAAATCCAAGTTATCTGCTGCCTCAGCCAGATACAAAGAGTCAATCTCTAGAAGCACTCGAGGCTTTAAGGAGAAGCTAGTTGCTCGTAACAACTCAGTCAAGGAGCTCAGCAAAGGAGTTCAGCGTGAGATGAGTGCAGGAATTGCTGGTGTTGCACGAATGTTTGAGCGCCTAGACCTTACCCCAAAGAAACCTGGAGCCCCAACTCCAGTTTCTGGTCGTAATGGAGGCACTTCAAACTTCAAGGGAAAAGGTGTGCTAGAGAATGTTATTGTTCAGTCTTGTAACAAAAGTAGCGGGAGAATCGCTGATGAGAGTTCAGATGGACCCTCTCACATCACAGTTGCTGCACCAGGCCGTGTTGGTGTTGAAGTTTCTTCTGCACAGAGCGAACACTGA

Protein Analysis

387

Amino Acids

42.12

Weight (kDa)

7.12

Isoelectric Point (pI)

66.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012488)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 977
AccII CGCG 1 cut(s) 289
AciI CCGC 3 cut(s) 249, 654, 1059
AclWI GGATC 3 cut(s) 239, 252, 291
AcoI YGGCCR 1 cut(s) 694
AfaI GTAC 1 cut(s) 276
AfiI CCNNNNNNNGG 1 cut(s) 977
AgsI TTSAA 8 cut(s) 124, 241, 335, 429, 623, 999, 1006, 1133
AjnI CCWGG 2 cut(s) 955, 1114
AjuI GAANNNNNNNTTGG 2 cut(s) 958, 990
AluBI AGCT 6 cut(s) 50, 87, 153, 437, 838, 868
AluI AGCT 6 cut(s) 50, 87, 153, 437, 838, 868
Alw21I GWGCWC 3 cut(s) 366, 439, 870
Alw26I GTCTC 2 cut(s) 278, 555
AlwI GGATC 3 cut(s) 239, 252, 291
AlwNI CAGNNNCTG 3 cut(s) 108, 977, 1109
Ama87I CYCGRG 1 cut(s) 819
AoxI GGCC 6 cut(s) 3, 318, 475, 608, 694, 1117
ApeKI GCWGC 8 cut(s) 153, 409, 419, 422, 532, 645, 779, 1109
AspA2I CCTAGG 1 cut(s) 478
AspLEI GCGC 2 cut(s) 291, 933
AspS9I GGNCC 4 cut(s) 319, 482, 713, 1088
AsuHPI GGTGA 4 cut(s) 570, 585, 599, 696
AvaI CYCGRG 1 cut(s) 819
AvaII GGWCC 3 cut(s) 482, 713, 1088
AvrII CCTAGG 1 cut(s) 478
BalI TGGCCA 1 cut(s) 696
BamHI GGATCC 1 cut(s) 244
BanII GRGCYC 3 cut(s) 439, 870, 964
BbsI GAAGAC 1 cut(s) 99
Bbv12I GWGCWC 3 cut(s) 366, 439, 870
BbvCI CCTCAGC 1 cut(s) 784
BbvI GCAGC 8 cut(s) 140, 406, 409, 421, 544, 657, 766, 1096
BccI CCATC 4 cut(s) 640, 704, 739, 1079
BceAI ACGGC 2 cut(s) 333, 1104
BciT130I CCWGG 2 cut(s) 957, 1116
BclI TGATCA 1 cut(s) 741
BcoDI GTCTC 2 cut(s) 278, 555
BfaI CTAG 6 cut(s) 266, 479, 810, 839, 935, 1022
BfmI CTRYAG 2 cut(s) 100, 643
BfoI RGCGCY 1 cut(s) 934
BglII AGATCT 1 cut(s) 467
BisI GCNGC 9 cut(s) 154, 410, 420, 423, 533, 646, 654, 780, 1110
BlnI CCTAGG 1 cut(s) 478
BlpI GCTNAGC 1 cut(s) 869
BlsI GCNGC 9 cut(s) 155, 411, 421, 424, 534, 647, 655, 781, 1111
Bme1390I CCNGG 2 cut(s) 957, 1116
Bme18I GGWCC 3 cut(s) 482, 713, 1088
BmeT110I CYCGRG 1 cut(s) 819
BmgT120I GGNCC 4 cut(s) 319, 482, 713, 1088
BmiI GGNNCC 4 cut(s) 246, 321, 961, 1090
BmrFI CCNGG 2 cut(s) 957, 1116
BmsI GCATC 2 cut(s) 259, 421
BpiI GAAGAC 1 cut(s) 99
BplI GAGNNNNNCTC 6 cut(s) 275, 307, 353, 385, 791, 823
BpmI CTGGAG 4 cut(s) 51, 537, 954, 978
Bpu10I CCTNAGC 1 cut(s) 784
Bpu1102I GCTNAGC 1 cut(s) 869
BpuEI CTTGAG 2 cut(s) 134, 277
BsaJI CCNNGG 2 cut(s) 315, 478
Bsc4I CCNNNNNNNGG 1 cut(s) 977
Bse1I ACTGG 2 cut(s) 697, 971
BseBI CCWGG 2 cut(s) 957, 1116
BseDI CCNNGG 2 cut(s) 315, 478
BseGI GGATG 1 cut(s) 400
BseLI CCNNNNNNNGG 1 cut(s) 977
BseMII CTCAG 6 cut(s) 390, 726, 744, 798, 870, 883
BseNI ACTGG 2 cut(s) 697, 971
BseXI GCAGC 8 cut(s) 140, 406, 409, 421, 544, 657, 766, 1096
BseYI CCCAGC 1 cut(s) 136
BsgI GTGCAG 3 cut(s) 918, 1095, 1128
Bsh1236I CGCG 1 cut(s) 289
BshFI GGCC 6 cut(s) 5, 320, 477, 610, 696, 1119
BsiHKAI GWGCWC 3 cut(s) 366, 439, 870
BsiHKCI CYCGRG 1 cut(s) 819
BslI CCNNNNNNNGG 1 cut(s) 977
BsmAI GTCTC 2 cut(s) 278, 555
BsmBI CGTCTC 2 cut(s) 278, 555
BsmI GAATGC 2 cut(s) 215, 566
BsnI GGCC 6 cut(s) 5, 320, 477, 610, 696, 1119
BsoBI CYCGRG 1 cut(s) 819
Bsp1286I GDGCHC 4 cut(s) 366, 439, 870, 964
Bsp1407I TGTACA 1 cut(s) 274
Bsp143I GATC 4 cut(s) 244, 296, 467, 741
Bsp1720I GCTNAGC 1 cut(s) 869
BspACI CCGC 3 cut(s) 249, 654, 1059
BspANI GGCC 6 cut(s) 5, 320, 477, 610, 696, 1119
BspCNI CTCAG 6 cut(s) 389, 727, 745, 797, 869, 882
BspFNI CGCG 1 cut(s) 289
BspHI TCATGA 1 cut(s) 511
BspLI GGNNCC 4 cut(s) 246, 321, 961, 1090
BspMAI CTGCAG 2 cut(s) 104, 647
BspPI GGATC 3 cut(s) 239, 252, 291
BsrGI TGTACA 1 cut(s) 274
BsrI ACTGG 2 cut(s) 697, 971
BssECI CCNNGG 2 cut(s) 315, 478
BssMI GATC 4 cut(s) 244, 296, 467, 741
BssT1I CCWWGG 1 cut(s) 478
Bst2UI CCWGG 2 cut(s) 957, 1116
Bst4CI ACNGT 2 cut(s) 179, 1105
Bst6I CTCTTC 1 cut(s) 25
BstAPI GCANNNNNTGC 2 cut(s) 108, 905
BstAUI TGTACA 1 cut(s) 274
BstDEI CTNAG 6 cut(s) 376, 735, 753, 784, 856, 869
BstDSI CCRYGG 1 cut(s) 315
BstEII GGTNACC 1 cut(s) 576
BstF5I GGATG 1 cut(s) 400
BstFNI CGCG 1 cut(s) 289
BstH2I RGCGCY 1 cut(s) 934
BstHHI GCGC 2 cut(s) 291, 933
BstKTI GATC 4 cut(s) 247, 299, 470, 744
BstMAI GTCTC 2 cut(s) 278, 555
BstMBI GATC 4 cut(s) 244, 296, 467, 741
BstMWI GCNNNNNNNGC 8 cut(s) 11, 108, 406, 726, 785, 822, 905, 914
BstNI CCWGG 2 cut(s) 957, 1116
BstPI GGTNACC 1 cut(s) 576
BstSCI CCNGG 2 cut(s) 955, 1114
BstSFI CTRYAG 2 cut(s) 100, 643
BstUI CGCG 1 cut(s) 289
BstV1I GCAGC 8 cut(s) 140, 406, 409, 421, 544, 657, 766, 1096
BstV2I GAAGAC 1 cut(s) 99
BstX2I RGATCY 3 cut(s) 244, 296, 467
BstXI CCANNNNNNTGG 2 cut(s) 222, 572
BstYI RGATCY 3 cut(s) 244, 296, 467
BsuRI GGCC 6 cut(s) 5, 320, 477, 610, 696, 1119
BtgI CCRYGG 1 cut(s) 315
BtgZI GCGATG 1 cut(s) 144
BtsCI GGATG 1 cut(s) 400
BtsI GCAGTG 1 cut(s) 648
BtsIMutI CAGTG 3 cut(s) 175, 648, 1156
CaiI CAGNNNCTG 3 cut(s) 108, 977, 1109
CciI TCATGA 1 cut(s) 511
CfoI GCGC 2 cut(s) 291, 933
Cfr13I GGNCC 4 cut(s) 319, 482, 713, 1088
CseI GACGC 1 cut(s) 295
Csp6I GTAC 1 cut(s) 275
CviAII CATG 3 cut(s) 161, 491, 512
CviQI GTAC 1 cut(s) 275
DdeI CTNAG 6 cut(s) 376, 735, 753, 784, 856, 869
DpnI GATC 4 cut(s) 246, 298, 469, 743
DpnII GATC 4 cut(s) 244, 296, 467, 741
EaeI YGGCCR 1 cut(s) 694
Eam1104I CTCTTC 1 cut(s) 25
EarI CTCTTC 1 cut(s) 25
Ecl136II GAGCTC 2 cut(s) 437, 868
Eco130I CCWWGG 1 cut(s) 478
Eco24I GRGCYC 3 cut(s) 439, 870, 964
Eco47I GGWCC 3 cut(s) 482, 713, 1088
Eco53kI GAGCTC 2 cut(s) 437, 868
Eco88I CYCGRG 1 cut(s) 819
Eco91I GGTNACC 1 cut(s) 576
EcoICRI GAGCTC 2 cut(s) 437, 868
EcoO109I RGGNCCY 1 cut(s) 482
EcoO65I GGTNACC 1 cut(s) 576
EcoRII CCWGG 2 cut(s) 955, 1114
EcoT14I CCWWGG 1 cut(s) 478
EcoT38I GRGCYC 3 cut(s) 439, 870, 964
ErhI CCWWGG 1 cut(s) 478
Esp3I CGTCTC 2 cut(s) 278, 555
FaeI CATG 3 cut(s) 164, 494, 515
FatI CATG 3 cut(s) 160, 490, 511
FauI CCCGC 2 cut(s) 256, 1052
FbaI TGATCA 1 cut(s) 741
Fnu4HI GCNGC 9 cut(s) 154, 410, 420, 423, 533, 646, 654, 780, 1110
FokI GGATG 1 cut(s) 407
FriOI GRGCYC 3 cut(s) 439, 870, 964
Fsp4HI GCNGC 9 cut(s) 154, 410, 420, 423, 533, 646, 654, 780, 1110
FspBI CTAG 6 cut(s) 266, 479, 810, 839, 935, 1022
GlaI GCGC 2 cut(s) 290, 932
GluI GCNGC 9 cut(s) 154, 410, 420, 423, 533, 646, 654, 780, 1110
GsaI CCCAGC 1 cut(s) 140
GsuI CTGGAG 4 cut(s) 51, 537, 954, 978
HaeII RGCGCY 1 cut(s) 934
HaeIII GGCC 6 cut(s) 5, 320, 477, 610, 696, 1119
HgaI GACGC 1 cut(s) 295
HhaI GCGC 2 cut(s) 291, 933
Hin1II CATG 3 cut(s) 164, 494, 515
Hin6I GCGC 2 cut(s) 289, 931
HinP1I GCGC 2 cut(s) 289, 931
HinfI GANTC 8 cut(s) 31, 95, 368, 383, 590, 755, 800, 1065
HphI GGTGA 4 cut(s) 570, 585, 599, 696
Hpy166II GTNNAC 1 cut(s) 716
Hpy188I TCNGA 6 cut(s) 30, 36, 379, 388, 736, 1084
Hpy188III TCNNGA 8 cut(s) 68, 238, 266, 294, 300, 512, 554, 810
Hpy8I GTNNAC 1 cut(s) 716
HpyAV CCTTC 2 cut(s) 235, 495
HpyCH4III ACNGT 2 cut(s) 179, 1105
HpyCH4IV ACGT 1 cut(s) 548
HpyCH4V TGCA 9 cut(s) 102, 156, 409, 532, 645, 899, 917, 1112, 1145
HpyF10VI GCNNNNNNNGC 8 cut(s) 11, 108, 406, 726, 785, 822, 905, 914
HpyF3I CTNAG 6 cut(s) 376, 735, 753, 784, 856, 869
HpySE526I ACGT 1 cut(s) 548
Hsp92II CATG 3 cut(s) 164, 494, 515
HspAI GCGC 2 cut(s) 289, 931
Ksp22I TGATCA 1 cut(s) 741
Kzo9I GATC 4 cut(s) 244, 296, 467, 741
LmnI GCTCC 3 cut(s) 19, 865, 959
Lsp1109I GCAGC 8 cut(s) 140, 406, 409, 421, 544, 657, 766, 1096
LweI GCATC 2 cut(s) 259, 421
MaeI CTAG 6 cut(s) 266, 479, 810, 839, 935, 1022
MaeII ACGT 1 cut(s) 548
MaeIII GTNAC 6 cut(s) 192, 228, 440, 576, 848, 1046
MalI GATC 4 cut(s) 246, 298, 469, 743
MboI GATC 4 cut(s) 244, 296, 467, 741
MboII GAAGA 9 cut(s) 12, 15, 54, 104, 164, 303, 462, 569, 1131
MflI RGATCY 3 cut(s) 244, 296, 467
MhlI GDGCHC 4 cut(s) 366, 439, 870, 964
MlsI TGGCCA 1 cut(s) 696
MluCI AATT 3 cut(s) 216, 745, 903
MluNI TGGCCA 1 cut(s) 696
MlyI GAGTC 5 cut(s) 89, 362, 377, 764, 809
Mox20I TGGCCA 1 cut(s) 696
MscI TGGCCA 1 cut(s) 696
MseI TTAA 1 cut(s) 828
MslI CAYNNNNRTG 2 cut(s) 342, 516
Msp20I TGGCCA 1 cut(s) 696
MspA1I CMGCKG 1 cut(s) 153
MspR9I CCNGG 2 cut(s) 957, 1116
Mva1269I GAATGC 2 cut(s) 215, 566
MvaI CCWGG 2 cut(s) 957, 1116
MvnI CGCG 1 cut(s) 289
MwoI GCNNNNNNNGC 8 cut(s) 11, 108, 406, 726, 785, 822, 905, 914
NdeII GATC 4 cut(s) 244, 296, 467, 741
NlaIII CATG 3 cut(s) 164, 494, 515
NlaIV GGNNCC 4 cut(s) 246, 321, 961, 1090
NmuCI GTSAC 2 cut(s) 192, 576
PaeR7I CTCGAG 1 cut(s) 819
PagI TCATGA 1 cut(s) 511
PctI GAATGC 2 cut(s) 215, 566
PfeI GAWTC 3 cut(s) 31, 590, 1065
PflMI CCANNNNNTGG 1 cut(s) 977
PkrI GCNGC 9 cut(s) 155, 411, 421, 424, 534, 647, 655, 781, 1111
PleI GAGTC 5 cut(s) 89, 362, 377, 763, 808
PpsI GAGTC 5 cut(s) 89, 362, 377, 763, 808
PpuMI RGGWCCY 1 cut(s) 482
Psp124BI GAGCTC 2 cut(s) 439, 870
Psp5II RGGWCCY 1 cut(s) 482
Psp6I CCWGG 2 cut(s) 955, 1114
PspEI GGTNACC 1 cut(s) 576
PspFI CCCAGC 1 cut(s) 136
PspGI CCWGG 2 cut(s) 955, 1114
PspN4I GGNNCC 4 cut(s) 246, 321, 961, 1090
PspPI GGNCC 4 cut(s) 319, 482, 713, 1088
PspPPI RGGWCCY 1 cut(s) 482
PspXI VCTCGAGB 1 cut(s) 819
PstI CTGCAG 2 cut(s) 104, 647
PstNI CAGNNNCTG 3 cut(s) 108, 977, 1109
PsuI RGATCY 3 cut(s) 244, 296, 467
PvuII CAGCTG 1 cut(s) 153
RsaI GTAC 1 cut(s) 276
RsaNI GTAC 1 cut(s) 275
RseI CAYNNNNRTG 2 cut(s) 342, 516
SacI GAGCTC 2 cut(s) 439, 870
SaqAI TTAA 1 cut(s) 828
SatI GCNGC 9 cut(s) 154, 410, 420, 423, 533, 646, 654, 780, 1110
Sau3AI GATC 4 cut(s) 244, 296, 467, 741
Sau96I GGNCC 4 cut(s) 319, 482, 713, 1088
SchI GAGTC 5 cut(s) 89, 362, 377, 764, 809
ScrFI CCNGG 2 cut(s) 957, 1116
SduI GDGCHC 4 cut(s) 366, 439, 870, 964
SfaNI GCATC 2 cut(s) 259, 421
SfcI CTRYAG 2 cut(s) 100, 643
Sfr274I CTCGAG 1 cut(s) 819
SinI GGWCC 3 cut(s) 482, 713, 1088
SlaI CTCGAG 1 cut(s) 819
SmiMI CAYNNNNRTG 2 cut(s) 342, 516
SmlI CTYRAG 3 cut(s) 113, 292, 819
SmoI CTYRAG 3 cut(s) 113, 292, 819
Sse9I AATT 3 cut(s) 216, 745, 903
SsiI CCGC 3 cut(s) 249, 654, 1059
SspMI CTAG 6 cut(s) 266, 479, 810, 839, 935, 1022
SstI GAGCTC 2 cut(s) 439, 870
StyD4I CCNGG 2 cut(s) 955, 1114
StyI CCWWGG 1 cut(s) 478
TaaI ACNGT 2 cut(s) 179, 1105
TaiI ACGT 1 cut(s) 551
TaqI TCGA 1 cut(s) 820
TasI AATT 3 cut(s) 216, 745, 903
TatI WGTACW 1 cut(s) 274
TauI GCSGC 1 cut(s) 656
TfiI GAWTC 3 cut(s) 31, 590, 1065
Tru1I TTAA 1 cut(s) 828
Tru9I TTAA 1 cut(s) 828
TscAI CASTG 2 cut(s) 182, 655
TseFI GTSAC 2 cut(s) 192, 576
TseI GCWGC 8 cut(s) 153, 409, 419, 422, 532, 645, 779, 1109
Tsp45I GTSAC 2 cut(s) 192, 576
TspDTI ATGAA 3 cut(s) 105, 177, 528
TspRI CASTG 2 cut(s) 182, 655
Van91I CCANNNNNTGG 1 cut(s) 977
VpaK11BI GGWCC 3 cut(s) 482, 713, 1088
XbaI TCTAGA 2 cut(s) 265, 809
XhoI CTCGAG 1 cut(s) 819
XmaJI CCTAGG 1 cut(s) 478
XspI CTAG 6 cut(s) 266, 479, 810, 839, 935, 1022
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.