E3 ubiquitin-protein ligase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G14220 |
| fragaria_vesca | FvH4_4g14860 |
| malus_domestica | MD13G1185900.v1.1 MD16G1186700.v1.1 |
| prunus_persica | Prupe.1G153500_v2.0.a1 |
| pyrus_communis | pycom13g16040 pycom16g15650 |
| rosa_chinensis | RchiOBHm_Chr4g0417351 RchiOBHm_Chr4g0417381 |
| rosa_laevigata | RLG00000007915 |
| rosa_multiflora | Rmu_co8127690.1_g000001 Rmu_sc0004142.1_g000031 |
| rosa_roxburghii | Rroxscaffold_5G00361110 |
| rosa_rugosa | Rorug04G0147200 |
| rosa_samantha | Rh4AG210700 Rh4BG211200 Rh4CG221600 Rh4DG208600 |
| rosa_wichuraiana | Rw4G017800 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 977 |
| AccII | CGCG | 1 cut(s) | 289 |
| AciI | CCGC | 3 cut(s) | 249, 654, 1059 |
| AclWI | GGATC | 3 cut(s) | 239, 252, 291 |
| AcoI | YGGCCR | 1 cut(s) | 694 |
| AfaI | GTAC | 1 cut(s) | 276 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 977 |
| AgsI | TTSAA | 8 cut(s) | 124, 241, 335, 429, 623, 999, 1006, 1133 |
| AjnI | CCWGG | 2 cut(s) | 955, 1114 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 958, 990 |
| AluBI | AGCT | 6 cut(s) | 50, 87, 153, 437, 838, 868 |
| AluI | AGCT | 6 cut(s) | 50, 87, 153, 437, 838, 868 |
| Alw21I | GWGCWC | 3 cut(s) | 366, 439, 870 |
| Alw26I | GTCTC | 2 cut(s) | 278, 555 |
| AlwI | GGATC | 3 cut(s) | 239, 252, 291 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 108, 977, 1109 |
| Ama87I | CYCGRG | 1 cut(s) | 819 |
| AoxI | GGCC | 6 cut(s) | 3, 318, 475, 608, 694, 1117 |
| ApeKI | GCWGC | 8 cut(s) | 153, 409, 419, 422, 532, 645, 779, 1109 |
| AspA2I | CCTAGG | 1 cut(s) | 478 |
| AspLEI | GCGC | 2 cut(s) | 291, 933 |
| AspS9I | GGNCC | 4 cut(s) | 319, 482, 713, 1088 |
| AsuHPI | GGTGA | 4 cut(s) | 570, 585, 599, 696 |
| AvaI | CYCGRG | 1 cut(s) | 819 |
| AvaII | GGWCC | 3 cut(s) | 482, 713, 1088 |
| AvrII | CCTAGG | 1 cut(s) | 478 |
| BalI | TGGCCA | 1 cut(s) | 696 |
| BamHI | GGATCC | 1 cut(s) | 244 |
| BanII | GRGCYC | 3 cut(s) | 439, 870, 964 |
| BbsI | GAAGAC | 1 cut(s) | 99 |
| Bbv12I | GWGCWC | 3 cut(s) | 366, 439, 870 |
| BbvCI | CCTCAGC | 1 cut(s) | 784 |
| BbvI | GCAGC | 8 cut(s) | 140, 406, 409, 421, 544, 657, 766, 1096 |
| BccI | CCATC | 4 cut(s) | 640, 704, 739, 1079 |
| BceAI | ACGGC | 2 cut(s) | 333, 1104 |
| BciT130I | CCWGG | 2 cut(s) | 957, 1116 |
| BclI | TGATCA | 1 cut(s) | 741 |
| BcoDI | GTCTC | 2 cut(s) | 278, 555 |
| BfaI | CTAG | 6 cut(s) | 266, 479, 810, 839, 935, 1022 |
| BfmI | CTRYAG | 2 cut(s) | 100, 643 |
| BfoI | RGCGCY | 1 cut(s) | 934 |
| BglII | AGATCT | 1 cut(s) | 467 |
| BisI | GCNGC | 9 cut(s) | 154, 410, 420, 423, 533, 646, 654, 780, 1110 |
| BlnI | CCTAGG | 1 cut(s) | 478 |
| BlpI | GCTNAGC | 1 cut(s) | 869 |
| BlsI | GCNGC | 9 cut(s) | 155, 411, 421, 424, 534, 647, 655, 781, 1111 |
| Bme1390I | CCNGG | 2 cut(s) | 957, 1116 |
| Bme18I | GGWCC | 3 cut(s) | 482, 713, 1088 |
| BmeT110I | CYCGRG | 1 cut(s) | 819 |
| BmgT120I | GGNCC | 4 cut(s) | 319, 482, 713, 1088 |
| BmiI | GGNNCC | 4 cut(s) | 246, 321, 961, 1090 |
| BmrFI | CCNGG | 2 cut(s) | 957, 1116 |
| BmsI | GCATC | 2 cut(s) | 259, 421 |
| BpiI | GAAGAC | 1 cut(s) | 99 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 275, 307, 353, 385, 791, 823 |
| BpmI | CTGGAG | 4 cut(s) | 51, 537, 954, 978 |
| Bpu10I | CCTNAGC | 1 cut(s) | 784 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 869 |
| BpuEI | CTTGAG | 2 cut(s) | 134, 277 |
| BsaJI | CCNNGG | 2 cut(s) | 315, 478 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 977 |
| Bse1I | ACTGG | 2 cut(s) | 697, 971 |
| BseBI | CCWGG | 2 cut(s) | 957, 1116 |
| BseDI | CCNNGG | 2 cut(s) | 315, 478 |
| BseGI | GGATG | 1 cut(s) | 400 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 977 |
| BseMII | CTCAG | 6 cut(s) | 390, 726, 744, 798, 870, 883 |
| BseNI | ACTGG | 2 cut(s) | 697, 971 |
| BseXI | GCAGC | 8 cut(s) | 140, 406, 409, 421, 544, 657, 766, 1096 |
| BseYI | CCCAGC | 1 cut(s) | 136 |
| BsgI | GTGCAG | 3 cut(s) | 918, 1095, 1128 |
| Bsh1236I | CGCG | 1 cut(s) | 289 |
| BshFI | GGCC | 6 cut(s) | 5, 320, 477, 610, 696, 1119 |
| BsiHKAI | GWGCWC | 3 cut(s) | 366, 439, 870 |
| BsiHKCI | CYCGRG | 1 cut(s) | 819 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 977 |
| BsmAI | GTCTC | 2 cut(s) | 278, 555 |
| BsmBI | CGTCTC | 2 cut(s) | 278, 555 |
| BsmI | GAATGC | 2 cut(s) | 215, 566 |
| BsnI | GGCC | 6 cut(s) | 5, 320, 477, 610, 696, 1119 |
| BsoBI | CYCGRG | 1 cut(s) | 819 |
| Bsp1286I | GDGCHC | 4 cut(s) | 366, 439, 870, 964 |
| Bsp1407I | TGTACA | 1 cut(s) | 274 |
| Bsp143I | GATC | 4 cut(s) | 244, 296, 467, 741 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 869 |
| BspACI | CCGC | 3 cut(s) | 249, 654, 1059 |
| BspANI | GGCC | 6 cut(s) | 5, 320, 477, 610, 696, 1119 |
| BspCNI | CTCAG | 6 cut(s) | 389, 727, 745, 797, 869, 882 |
| BspFNI | CGCG | 1 cut(s) | 289 |
| BspHI | TCATGA | 1 cut(s) | 511 |
| BspLI | GGNNCC | 4 cut(s) | 246, 321, 961, 1090 |
| BspMAI | CTGCAG | 2 cut(s) | 104, 647 |
| BspPI | GGATC | 3 cut(s) | 239, 252, 291 |
| BsrGI | TGTACA | 1 cut(s) | 274 |
| BsrI | ACTGG | 2 cut(s) | 697, 971 |
| BssECI | CCNNGG | 2 cut(s) | 315, 478 |
| BssMI | GATC | 4 cut(s) | 244, 296, 467, 741 |
| BssT1I | CCWWGG | 1 cut(s) | 478 |
| Bst2UI | CCWGG | 2 cut(s) | 957, 1116 |
| Bst4CI | ACNGT | 2 cut(s) | 179, 1105 |
| Bst6I | CTCTTC | 1 cut(s) | 25 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 108, 905 |
| BstAUI | TGTACA | 1 cut(s) | 274 |
| BstDEI | CTNAG | 6 cut(s) | 376, 735, 753, 784, 856, 869 |
| BstDSI | CCRYGG | 1 cut(s) | 315 |
| BstEII | GGTNACC | 1 cut(s) | 576 |
| BstF5I | GGATG | 1 cut(s) | 400 |
| BstFNI | CGCG | 1 cut(s) | 289 |
| BstH2I | RGCGCY | 1 cut(s) | 934 |
| BstHHI | GCGC | 2 cut(s) | 291, 933 |
| BstKTI | GATC | 4 cut(s) | 247, 299, 470, 744 |
| BstMAI | GTCTC | 2 cut(s) | 278, 555 |
| BstMBI | GATC | 4 cut(s) | 244, 296, 467, 741 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 11, 108, 406, 726, 785, 822, 905, 914 |
| BstNI | CCWGG | 2 cut(s) | 957, 1116 |
| BstPI | GGTNACC | 1 cut(s) | 576 |
| BstSCI | CCNGG | 2 cut(s) | 955, 1114 |
| BstSFI | CTRYAG | 2 cut(s) | 100, 643 |
| BstUI | CGCG | 1 cut(s) | 289 |
| BstV1I | GCAGC | 8 cut(s) | 140, 406, 409, 421, 544, 657, 766, 1096 |
| BstV2I | GAAGAC | 1 cut(s) | 99 |
| BstX2I | RGATCY | 3 cut(s) | 244, 296, 467 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 222, 572 |
| BstYI | RGATCY | 3 cut(s) | 244, 296, 467 |
| BsuRI | GGCC | 6 cut(s) | 5, 320, 477, 610, 696, 1119 |
| BtgI | CCRYGG | 1 cut(s) | 315 |
| BtgZI | GCGATG | 1 cut(s) | 144 |
| BtsCI | GGATG | 1 cut(s) | 400 |
| BtsI | GCAGTG | 1 cut(s) | 648 |
| BtsIMutI | CAGTG | 3 cut(s) | 175, 648, 1156 |
| CaiI | CAGNNNCTG | 3 cut(s) | 108, 977, 1109 |
| CciI | TCATGA | 1 cut(s) | 511 |
| CfoI | GCGC | 2 cut(s) | 291, 933 |
| Cfr13I | GGNCC | 4 cut(s) | 319, 482, 713, 1088 |
| CseI | GACGC | 1 cut(s) | 295 |
| Csp6I | GTAC | 1 cut(s) | 275 |
| CviAII | CATG | 3 cut(s) | 161, 491, 512 |
| CviQI | GTAC | 1 cut(s) | 275 |
| DdeI | CTNAG | 6 cut(s) | 376, 735, 753, 784, 856, 869 |
| DpnI | GATC | 4 cut(s) | 246, 298, 469, 743 |
| DpnII | GATC | 4 cut(s) | 244, 296, 467, 741 |
| EaeI | YGGCCR | 1 cut(s) | 694 |
| Eam1104I | CTCTTC | 1 cut(s) | 25 |
| EarI | CTCTTC | 1 cut(s) | 25 |
| Ecl136II | GAGCTC | 2 cut(s) | 437, 868 |
| Eco130I | CCWWGG | 1 cut(s) | 478 |
| Eco24I | GRGCYC | 3 cut(s) | 439, 870, 964 |
| Eco47I | GGWCC | 3 cut(s) | 482, 713, 1088 |
| Eco53kI | GAGCTC | 2 cut(s) | 437, 868 |
| Eco88I | CYCGRG | 1 cut(s) | 819 |
| Eco91I | GGTNACC | 1 cut(s) | 576 |
| EcoICRI | GAGCTC | 2 cut(s) | 437, 868 |
| EcoO109I | RGGNCCY | 1 cut(s) | 482 |
| EcoO65I | GGTNACC | 1 cut(s) | 576 |
| EcoRII | CCWGG | 2 cut(s) | 955, 1114 |
| EcoT14I | CCWWGG | 1 cut(s) | 478 |
| EcoT38I | GRGCYC | 3 cut(s) | 439, 870, 964 |
| ErhI | CCWWGG | 1 cut(s) | 478 |
| Esp3I | CGTCTC | 2 cut(s) | 278, 555 |
| FaeI | CATG | 3 cut(s) | 164, 494, 515 |
| FatI | CATG | 3 cut(s) | 160, 490, 511 |
| FauI | CCCGC | 2 cut(s) | 256, 1052 |
| FbaI | TGATCA | 1 cut(s) | 741 |
| Fnu4HI | GCNGC | 9 cut(s) | 154, 410, 420, 423, 533, 646, 654, 780, 1110 |
| FokI | GGATG | 1 cut(s) | 407 |
| FriOI | GRGCYC | 3 cut(s) | 439, 870, 964 |
| Fsp4HI | GCNGC | 9 cut(s) | 154, 410, 420, 423, 533, 646, 654, 780, 1110 |
| FspBI | CTAG | 6 cut(s) | 266, 479, 810, 839, 935, 1022 |
| GlaI | GCGC | 2 cut(s) | 290, 932 |
| GluI | GCNGC | 9 cut(s) | 154, 410, 420, 423, 533, 646, 654, 780, 1110 |
| GsaI | CCCAGC | 1 cut(s) | 140 |
| GsuI | CTGGAG | 4 cut(s) | 51, 537, 954, 978 |
| HaeII | RGCGCY | 1 cut(s) | 934 |
| HaeIII | GGCC | 6 cut(s) | 5, 320, 477, 610, 696, 1119 |
| HgaI | GACGC | 1 cut(s) | 295 |
| HhaI | GCGC | 2 cut(s) | 291, 933 |
| Hin1II | CATG | 3 cut(s) | 164, 494, 515 |
| Hin6I | GCGC | 2 cut(s) | 289, 931 |
| HinP1I | GCGC | 2 cut(s) | 289, 931 |
| HinfI | GANTC | 8 cut(s) | 31, 95, 368, 383, 590, 755, 800, 1065 |
| HphI | GGTGA | 4 cut(s) | 570, 585, 599, 696 |
| Hpy166II | GTNNAC | 1 cut(s) | 716 |
| Hpy188I | TCNGA | 6 cut(s) | 30, 36, 379, 388, 736, 1084 |
| Hpy188III | TCNNGA | 8 cut(s) | 68, 238, 266, 294, 300, 512, 554, 810 |
| Hpy8I | GTNNAC | 1 cut(s) | 716 |
| HpyAV | CCTTC | 2 cut(s) | 235, 495 |
| HpyCH4III | ACNGT | 2 cut(s) | 179, 1105 |
| HpyCH4IV | ACGT | 1 cut(s) | 548 |
| HpyCH4V | TGCA | 9 cut(s) | 102, 156, 409, 532, 645, 899, 917, 1112, 1145 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 11, 108, 406, 726, 785, 822, 905, 914 |
| HpyF3I | CTNAG | 6 cut(s) | 376, 735, 753, 784, 856, 869 |
| HpySE526I | ACGT | 1 cut(s) | 548 |
| Hsp92II | CATG | 3 cut(s) | 164, 494, 515 |
| HspAI | GCGC | 2 cut(s) | 289, 931 |
| Ksp22I | TGATCA | 1 cut(s) | 741 |
| Kzo9I | GATC | 4 cut(s) | 244, 296, 467, 741 |
| LmnI | GCTCC | 3 cut(s) | 19, 865, 959 |
| Lsp1109I | GCAGC | 8 cut(s) | 140, 406, 409, 421, 544, 657, 766, 1096 |
| LweI | GCATC | 2 cut(s) | 259, 421 |
| MaeI | CTAG | 6 cut(s) | 266, 479, 810, 839, 935, 1022 |
| MaeII | ACGT | 1 cut(s) | 548 |
| MaeIII | GTNAC | 6 cut(s) | 192, 228, 440, 576, 848, 1046 |
| MalI | GATC | 4 cut(s) | 246, 298, 469, 743 |
| MboI | GATC | 4 cut(s) | 244, 296, 467, 741 |
| MboII | GAAGA | 9 cut(s) | 12, 15, 54, 104, 164, 303, 462, 569, 1131 |
| MflI | RGATCY | 3 cut(s) | 244, 296, 467 |
| MhlI | GDGCHC | 4 cut(s) | 366, 439, 870, 964 |
| MlsI | TGGCCA | 1 cut(s) | 696 |
| MluCI | AATT | 3 cut(s) | 216, 745, 903 |
| MluNI | TGGCCA | 1 cut(s) | 696 |
| MlyI | GAGTC | 5 cut(s) | 89, 362, 377, 764, 809 |
| Mox20I | TGGCCA | 1 cut(s) | 696 |
| MscI | TGGCCA | 1 cut(s) | 696 |
| MseI | TTAA | 1 cut(s) | 828 |
| MslI | CAYNNNNRTG | 2 cut(s) | 342, 516 |
| Msp20I | TGGCCA | 1 cut(s) | 696 |
| MspA1I | CMGCKG | 1 cut(s) | 153 |
| MspR9I | CCNGG | 2 cut(s) | 957, 1116 |
| Mva1269I | GAATGC | 2 cut(s) | 215, 566 |
| MvaI | CCWGG | 2 cut(s) | 957, 1116 |
| MvnI | CGCG | 1 cut(s) | 289 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 11, 108, 406, 726, 785, 822, 905, 914 |
| NdeII | GATC | 4 cut(s) | 244, 296, 467, 741 |
| NlaIII | CATG | 3 cut(s) | 164, 494, 515 |
| NlaIV | GGNNCC | 4 cut(s) | 246, 321, 961, 1090 |
| NmuCI | GTSAC | 2 cut(s) | 192, 576 |
| PaeR7I | CTCGAG | 1 cut(s) | 819 |
| PagI | TCATGA | 1 cut(s) | 511 |
| PctI | GAATGC | 2 cut(s) | 215, 566 |
| PfeI | GAWTC | 3 cut(s) | 31, 590, 1065 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 977 |
| PkrI | GCNGC | 9 cut(s) | 155, 411, 421, 424, 534, 647, 655, 781, 1111 |
| PleI | GAGTC | 5 cut(s) | 89, 362, 377, 763, 808 |
| PpsI | GAGTC | 5 cut(s) | 89, 362, 377, 763, 808 |
| PpuMI | RGGWCCY | 1 cut(s) | 482 |
| Psp124BI | GAGCTC | 2 cut(s) | 439, 870 |
| Psp5II | RGGWCCY | 1 cut(s) | 482 |
| Psp6I | CCWGG | 2 cut(s) | 955, 1114 |
| PspEI | GGTNACC | 1 cut(s) | 576 |
| PspFI | CCCAGC | 1 cut(s) | 136 |
| PspGI | CCWGG | 2 cut(s) | 955, 1114 |
| PspN4I | GGNNCC | 4 cut(s) | 246, 321, 961, 1090 |
| PspPI | GGNCC | 4 cut(s) | 319, 482, 713, 1088 |
| PspPPI | RGGWCCY | 1 cut(s) | 482 |
| PspXI | VCTCGAGB | 1 cut(s) | 819 |
| PstI | CTGCAG | 2 cut(s) | 104, 647 |
| PstNI | CAGNNNCTG | 3 cut(s) | 108, 977, 1109 |
| PsuI | RGATCY | 3 cut(s) | 244, 296, 467 |
| PvuII | CAGCTG | 1 cut(s) | 153 |
| RsaI | GTAC | 1 cut(s) | 276 |
| RsaNI | GTAC | 1 cut(s) | 275 |
| RseI | CAYNNNNRTG | 2 cut(s) | 342, 516 |
| SacI | GAGCTC | 2 cut(s) | 439, 870 |
| SaqAI | TTAA | 1 cut(s) | 828 |
| SatI | GCNGC | 9 cut(s) | 154, 410, 420, 423, 533, 646, 654, 780, 1110 |
| Sau3AI | GATC | 4 cut(s) | 244, 296, 467, 741 |
| Sau96I | GGNCC | 4 cut(s) | 319, 482, 713, 1088 |
| SchI | GAGTC | 5 cut(s) | 89, 362, 377, 764, 809 |
| ScrFI | CCNGG | 2 cut(s) | 957, 1116 |
| SduI | GDGCHC | 4 cut(s) | 366, 439, 870, 964 |
| SfaNI | GCATC | 2 cut(s) | 259, 421 |
| SfcI | CTRYAG | 2 cut(s) | 100, 643 |
| Sfr274I | CTCGAG | 1 cut(s) | 819 |
| SinI | GGWCC | 3 cut(s) | 482, 713, 1088 |
| SlaI | CTCGAG | 1 cut(s) | 819 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 342, 516 |
| SmlI | CTYRAG | 3 cut(s) | 113, 292, 819 |
| SmoI | CTYRAG | 3 cut(s) | 113, 292, 819 |
| Sse9I | AATT | 3 cut(s) | 216, 745, 903 |
| SsiI | CCGC | 3 cut(s) | 249, 654, 1059 |
| SspMI | CTAG | 6 cut(s) | 266, 479, 810, 839, 935, 1022 |
| SstI | GAGCTC | 2 cut(s) | 439, 870 |
| StyD4I | CCNGG | 2 cut(s) | 955, 1114 |
| StyI | CCWWGG | 1 cut(s) | 478 |
| TaaI | ACNGT | 2 cut(s) | 179, 1105 |
| TaiI | ACGT | 1 cut(s) | 551 |
| TaqI | TCGA | 1 cut(s) | 820 |
| TasI | AATT | 3 cut(s) | 216, 745, 903 |
| TatI | WGTACW | 1 cut(s) | 274 |
| TauI | GCSGC | 1 cut(s) | 656 |
| TfiI | GAWTC | 3 cut(s) | 31, 590, 1065 |
| Tru1I | TTAA | 1 cut(s) | 828 |
| Tru9I | TTAA | 1 cut(s) | 828 |
| TscAI | CASTG | 2 cut(s) | 182, 655 |
| TseFI | GTSAC | 2 cut(s) | 192, 576 |
| TseI | GCWGC | 8 cut(s) | 153, 409, 419, 422, 532, 645, 779, 1109 |
| Tsp45I | GTSAC | 2 cut(s) | 192, 576 |
| TspDTI | ATGAA | 3 cut(s) | 105, 177, 528 |
| TspRI | CASTG | 2 cut(s) | 182, 655 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 977 |
| VpaK11BI | GGWCC | 3 cut(s) | 482, 713, 1088 |
| XbaI | TCTAGA | 2 cut(s) | 265, 809 |
| XhoI | CTCGAG | 1 cut(s) | 819 |
| XmaJI | CCTAGG | 1 cut(s) | 478 |
| XspI | CTAG | 6 cut(s) | 266, 479, 810, 839, 935, 1022 |