Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0012488

Physical Location & Seq

Genomic Coordinates Forward (+)

39952603 .. 39955540

Gene Structure 2938 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G017800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGGCATCTTTCGCTCCTTCCTCTTCCTCTTCTTCTGATAACCCAATACCCATCTGGACTCCATCCTCCTCTGTATCTGCTTTTCCCGACGAGCCGTATGAAGACTCCTGCAGTATCTGCCTCGAGCCTTTCTGCTCCGATGACCCAGCCACTATTACCAGCTGCAAACATGACTATCATCTCCACTGTATATTAGAATGGTCACAAAGAAGTAAAGAATGCCCAATTTGTTGGCAGTTACTTGTCTTGAAGGATCCGGCTAGCCAAGGGCTTCTAGATGTTGTACAGAATGAGAAGCGCTCAAGGGCAAGAAACATTTCTTCCATTGCCCCCCCAACTTTTCATAATTCCTCTGAGGACTTTGACTTTGAACATGATTCGTTCTCAGATGACTCCGATTTGGACGAGCGTATTATGCAGCATCTTGCTGCTGCGTCTAGCAGGGCTCGTTATGTACGCAGAAGGGAAAGACAGAGATATTCTGGACTGGGCCCTTCCAATGGTTTTAATTTTTCCCCTCGTGAAAATGTTTCTGGTATGGAGCAAGCACACCCAACTTCTCCTGTAGAACGTCCAAGTATCACCTATGGGTCACCAGGAGGTGATTCACCAACTTCTCCAAGACCACCTGTTGTTCAACCTCCACCATCTTTTATCTGCAGCACTGCTGCCAACAATGATGTTCCTTTCAAACCAAGAGTTCTCTTTGGCCAGCCAACACCTAATGGACCACAAAGACAGAGCCCATCTGAGATGCTCAATTTTCCCGAGTCAATCAAATCAAAGCTGTCTGCTGCTTCAGCCAGATACAAAGAGTCCATCTCCAAAGGCACCCGAGGGTTGAAGGAAAAGCTACTTGCTCGTAACAACTCAGTCAAGGAGATGAGCAAAGGAGTTCAACGTGAGATGACTGCAGGAATTGCTGGTGTTGCACGAATGTTTGAGCGCTTAGACCTTACCTCAAAGAAACCTGGTGCCCCTACTCCAGTTTCTGGTCGTAGTGGGGGTACTTCAAACTTCTCCGTCAAGGGAAAAGCTGTGCTAGAGAATGTTATTGTTCAGTCGTGTAATAAAAGTAGTGGAAGAATTGCTGATGAAAGTTCAGAAGCACCCTCTCAGGTCATCAGGCTGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009553 GO:0009555 GO:0009561 GO:0009987 GO:0010498 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0051603 GO:0051726 GO:0055046 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_2 zf-RING_2 zf-rbx1

Protein Analysis

378

Amino Acids

41.21

Weight (kDa)

8.04

Isoelectric Point (pI)

61.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	31 - 77	1.7e-08	RING-H2 zinc finger domain
zf-ANAPC11	PF12861	32 - 84	2.1e-06	Anaphase-promoting complex subunit 11 RING-H2 finger
zf-RING_2	PF13639	35 - 77	2.8e-10	Ring finger domain
zf-RING_11	PF17123	37 - 64	7.4e-06	RING-like zinc finger
zf-RING_5	PF14634	37 - 77	9.7e-06	zinc-RING finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012488)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14220
fragaria_vesca	FvH4_4g14860
malus_domestica	MD13G1185900.v1.1 MD16G1186700.v1.1
prunus_persica	Prupe.1G153500_v2.0.a1
pyrus_communis	pycom13g16040 pycom16g15650
rosa_chinensis	RchiOBHm_Chr4g0417351 RchiOBHm_Chr4g0417381
rosa_laevigata	RLG00000007915
rosa_multiflora	Rmu_co8127690.1_g000001 Rmu_sc0004142.1_g000031
rosa_roxburghii	Rroxscaffold_5G00361110
rosa_rugosa	Rorug04G0147200
rosa_samantha	Rh4AG210700 Rh4BG211200 Rh4CG221600 Rh4DG208600
rosa_wichuraiana	Rw4G017800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	830, 974
AccB7I	CCANNNNNTGG	1 cut(s)	992
AclWI	GGATC	2 cut(s)	248, 261
AcoI	YGGCCR	1 cut(s)	709
AcuI	CTGAAG	1 cut(s)	783
AfaI	GTAC	3 cut(s)	285, 456, 1009
AfeI	AGCGCT	2 cut(s)	299, 947
AfiI	CCNNNNNNNGG	2 cut(s)	500, 992
AgsI	TTSAA	7 cut(s)	250, 371, 638, 691, 844, 899, 1014
AjnI	CCWGG	2 cut(s)	595, 970
AluBI	AGCT	4 cut(s)	162, 787, 853, 1037
AluI	AGCT	4 cut(s)	162, 787, 853, 1037
AlwI	GGATC	2 cut(s)	248, 261
AlwNI	CAGNNNCTG	2 cut(s)	117, 992
Ama87I	CYCGRG	3 cut(s)	122, 767, 834
Aor51HI	AGCGCT	2 cut(s)	299, 947
AoxI	GGCC	2 cut(s)	490, 709
ApaI	GGGCCC	1 cut(s)	494
ApeKI	GCWGC	7 cut(s)	162, 418, 428, 431, 660, 668, 794
ArsI	GACNNNNNNTTYG	2 cut(s)	350, 382
Asp700I	GAANNNNTTC	1 cut(s)	316
AspLEI	GCGC	2 cut(s)	300, 948
AspS9I	GGNCC	3 cut(s)	490, 491, 728
AsuHPI	GGTGA	4 cut(s)	574, 585, 600, 614
AsuNHI	GCTAGC	1 cut(s)	260
AvaI	CYCGRG	3 cut(s)	122, 767, 834
AvaII	GGWCC	1 cut(s)	728
BaeGI	GKGCMC	2 cut(s)	494, 979
BalI	TGGCCA	1 cut(s)	711
BamHI	GGATCC	1 cut(s)	253
BanI	GGYRCC	2 cut(s)	830, 974
BanII	GRGCYC	3 cut(s)	448, 494, 746
BauI	CACGAG	1 cut(s)	519
BbsI	GAAGAC	1 cut(s)	108
BbvI	GCAGC	7 cut(s)	149, 415, 418, 430, 655, 672, 781
BccI	CCATC	5 cut(s)	59, 70, 655, 754, 827
BceAI	ACGGC	1 cut(s)	79
BciT130I	CCWGG	2 cut(s)	597, 972
BfaI	CTAG	4 cut(s)	261, 275, 438, 1043
BfmI	CTRYAG	4 cut(s)	109, 564, 658, 912
BfoI	RGCGCY	2 cut(s)	301, 949
BisI	GCNGC	7 cut(s)	163, 419, 429, 432, 661, 669, 795
BlsI	GCNGC	7 cut(s)	164, 420, 430, 433, 662, 670, 796
Bme1390I	CCNGG	2 cut(s)	597, 972
Bme18I	GGWCC	1 cut(s)	728
BmeT110I	CYCGRG	3 cut(s)	122, 767, 834
BmgT120I	GGNCC	3 cut(s)	490, 491, 728
BmiI	GGNNCC	4 cut(s)	255, 492, 832, 976
BmrFI	CCNGG	2 cut(s)	597, 972
BmrI	ACTGGG	1 cut(s)	497
BmsI	GCATC	3 cut(s)	14, 430, 744
BmtI	GCTAGC	1 cut(s)	264
BmuI	ACTGGG	1 cut(s)	497
BpiI	GAAGAC	1 cut(s)	108
BplI	GAGNNNNNCTC	4 cut(s)	284, 316, 806, 838
BpmI	CTGGAG	1 cut(s)	969
BpuEI	CTTGAG	1 cut(s)	286
BsaJI	CCNNGG	2 cut(s)	265, 835
Bsc4I	CCNNNNNNNGG	2 cut(s)	500, 992
Bse1I	ACTGG	2 cut(s)	492, 986
Bse3DI	GCAATG	1 cut(s)	324
BseBI	CCWGG	2 cut(s)	597, 972
BseDI	CCNNGG	2 cut(s)	265, 835
BseGI	GGATG	1 cut(s)	62
BseLI	CCNNNNNNNGG	2 cut(s)	500, 992
BseMI	GCAATG	1 cut(s)	324
BseMII	CTCAG	5 cut(s)	345, 399, 741, 885, 1130
BseNI	ACTGG	2 cut(s)	492, 986
BseRI	GAGGAG	1 cut(s)	58
BseSI	GKGCMC	2 cut(s)	494, 979
BseXI	GCAGC	7 cut(s)	149, 415, 418, 430, 655, 672, 781
BseYI	CCCAGC	1 cut(s)	145
BshFI	GGCC	2 cut(s)	492, 711
BshNI	GGYRCC	2 cut(s)	830, 974
BsiHKCI	CYCGRG	3 cut(s)	122, 767, 834
BsiSI	CCGG	1 cut(s)	257
BslI	CCNNNNNNNGG	2 cut(s)	500, 992
BsmI	GAATGC	1 cut(s)	224
BsnI	GGCC	2 cut(s)	492, 711
BsoBI	CYCGRG	3 cut(s)	122, 767, 834
Bsp120I	GGGCCC	1 cut(s)	490
Bsp1286I	GDGCHC	4 cut(s)	448, 494, 746, 979
Bsp1407I	TGTACA	1 cut(s)	283
Bsp143I	GATC	1 cut(s)	253
BspANI	GGCC	2 cut(s)	492, 711
BspCNI	CTCAG	5 cut(s)	346, 398, 742, 884, 1129
BspLI	GGNNCC	4 cut(s)	255, 492, 832, 976
BspMAI	CTGCAG	3 cut(s)	113, 662, 916
BspOI	GCTAGC	1 cut(s)	264
BspPI	GGATC	2 cut(s)	248, 261
BspT107I	GGYRCC	2 cut(s)	830, 974
BsrDI	GCAATG	1 cut(s)	324
BsrGI	TGTACA	1 cut(s)	283
BsrI	ACTGG	2 cut(s)	492, 986
BssECI	CCNNGG	2 cut(s)	265, 835
BssMI	GATC	1 cut(s)	253
BssSI	CACGAG	1 cut(s)	519
BssT1I	CCWWGG	1 cut(s)	265
Bst2BI	CACGAG	1 cut(s)	519
Bst2UI	CCWGG	2 cut(s)	597, 972
Bst4CI	ACNGT	1 cut(s)	188
Bst6I	CTCTTC	2 cut(s)	28, 34
BstAPI	GCANNNNNTGC	2 cut(s)	117, 920
BstAUI	TGTACA	1 cut(s)	283
BstC8I	GCNNGC	3 cut(s)	262, 546, 713
BstDEI	CTNAG	6 cut(s)	354, 385, 750, 871, 949, 1116
BstEII	GGTNACC	1 cut(s)	591
BstF5I	GGATG	1 cut(s)	62
BstH2I	RGCGCY	2 cut(s)	301, 949
BstHHI	GCGC	2 cut(s)	300, 948
BstKTI	GATC	1 cut(s)	256
BstMBI	GATC	1 cut(s)	253
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 117, 415, 800, 920, 929
BstNI	CCWGG	2 cut(s)	597, 972
BstPI	GGTNACC	1 cut(s)	591
BstSCI	CCNGG	2 cut(s)	595, 970
BstSFI	CTRYAG	4 cut(s)	109, 564, 658, 912
BstSLI	GKGCMC	2 cut(s)	494, 979
BstV1I	GCAGC	7 cut(s)	149, 415, 418, 430, 655, 672, 781
BstV2I	GAAGAC	1 cut(s)	108
BstX2I	RGATCY	1 cut(s)	253
BstXI	CCANNNNNNTGG	1 cut(s)	231
BstYI	RGATCY	1 cut(s)	253
BsuRI	GGCC	2 cut(s)	492, 711
BtsCI	GGATG	1 cut(s)	62
BtsI	GCAGTG	1 cut(s)	663
BtsIMutI	CAGTG	2 cut(s)	184, 663
Cac8I	GCNNGC	3 cut(s)	262, 546, 713
CaiI	CAGNNNCTG	2 cut(s)	117, 992
CfoI	GCGC	2 cut(s)	300, 948
Cfr13I	GGNCC	3 cut(s)	490, 491, 728
CseI	GACGC	1 cut(s)	423
CsiI	ACCWGGT	1 cut(s)	970
Csp6I	GTAC	3 cut(s)	284, 455, 1008
CviAII	CATG	2 cut(s)	170, 374
CviQI	GTAC	3 cut(s)	284, 455, 1008
DdeI	CTNAG	6 cut(s)	354, 385, 750, 871, 949, 1116
DpnI	GATC	1 cut(s)	255
DpnII	GATC	1 cut(s)	253
EaeI	YGGCCR	1 cut(s)	709
Eam1104I	CTCTTC	2 cut(s)	28, 34
EarI	CTCTTC	2 cut(s)	28, 34
Eco130I	CCWWGG	1 cut(s)	265
Eco24I	GRGCYC	3 cut(s)	448, 494, 746
Eco47I	GGWCC	1 cut(s)	728
Eco47III	AGCGCT	2 cut(s)	299, 947
Eco57I	CTGAAG	1 cut(s)	783
Eco88I	CYCGRG	3 cut(s)	122, 767, 834
Eco91I	GGTNACC	1 cut(s)	591
EcoO109I	RGGNCCY	1 cut(s)	491
EcoO65I	GGTNACC	1 cut(s)	591
EcoRII	CCWGG	2 cut(s)	595, 970
EcoT14I	CCWWGG	1 cut(s)	265
EcoT38I	GRGCYC	3 cut(s)	448, 494, 746
ErhI	CCWWGG	1 cut(s)	265
FaeI	CATG	2 cut(s)	173, 377
FaiI	YATR	9 cut(s)	99, 171, 191, 345, 375, 416, 453, 539, 588
FatI	CATG	2 cut(s)	169, 373
Fnu4HI	GCNGC	7 cut(s)	163, 419, 429, 432, 661, 669, 795
FokI	GGATG	1 cut(s)	49
FriOI	GRGCYC	3 cut(s)	448, 494, 746
Fsp4HI	GCNGC	7 cut(s)	163, 419, 429, 432, 661, 669, 795
FspBI	CTAG	4 cut(s)	261, 275, 438, 1043
GlaI	GCGC	2 cut(s)	299, 947
GluI	GCNGC	7 cut(s)	163, 419, 429, 432, 661, 669, 795
GsaI	CCCAGC	1 cut(s)	149
GsuI	CTGGAG	1 cut(s)	969
HaeII	RGCGCY	2 cut(s)	301, 949
HaeIII	GGCC	2 cut(s)	492, 711
HapII	CCGG	1 cut(s)	257
HgaI	GACGC	1 cut(s)	423
HhaI	GCGC	2 cut(s)	300, 948
Hin1II	CATG	2 cut(s)	173, 377
Hin6I	GCGC	2 cut(s)	298, 946
HinP1I	GCGC	2 cut(s)	298, 946
HinfI	GANTC	7 cut(s)	58, 104, 377, 392, 605, 770, 815
HpaII	CCGG	1 cut(s)	257
HphI	GGTGA	4 cut(s)	574, 585, 600, 614
Hpy188I	TCNGA	7 cut(s)	37, 139, 355, 388, 397, 751, 1105
Hpy188III	TCNNGA	7 cut(s)	55, 86, 247, 275, 483, 521, 767
Hpy99I	CGWCG	1 cut(s)	92
HpyAV	CCTTC	5 cut(s)	27, 244, 456, 504, 838
HpyCH4III	ACNGT	1 cut(s)	188
HpyCH4IV	ACGT	2 cut(s)	571, 901
HpyCH4V	TGCA	6 cut(s)	111, 165, 418, 660, 914, 932
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 117, 415, 800, 920, 929
HpyF3I	CTNAG	6 cut(s)	354, 385, 750, 871, 949, 1116
HpySE526I	ACGT	2 cut(s)	571, 901
Hsp92II	CATG	2 cut(s)	173, 377
HspAI	GCGC	2 cut(s)	298, 946
Kzo9I	GATC	1 cut(s)	253
LmnI	GCTCC	3 cut(s)	19, 140, 541
Lsp1109I	GCAGC	7 cut(s)	149, 415, 418, 430, 655, 672, 781
LweI	GCATC	3 cut(s)	14, 430, 744
MabI	ACCWGGT	1 cut(s)	970
MaeI	CTAG	4 cut(s)	261, 275, 438, 1043
MaeII	ACGT	2 cut(s)	571, 901
MaeIII	GTNAC	4 cut(s)	201, 237, 591, 863
MalI	GATC	1 cut(s)	255
MboI	GATC	1 cut(s)	253
MboII	GAAGA	6 cut(s)	15, 21, 24, 113, 312, 1095
MflI	RGATCY	1 cut(s)	253
MhlI	GDGCHC	4 cut(s)	448, 494, 746, 979
MlsI	TGGCCA	1 cut(s)	711
MluCI	AATT	6 cut(s)	225, 346, 508, 760, 918, 1086
MluNI	TGGCCA	1 cut(s)	711
MlyI	GAGTC	5 cut(s)	52, 98, 386, 779, 824
Mox20I	TGGCCA	1 cut(s)	711
MroXI	GAANNNNTTC	1 cut(s)	316
MscI	TGGCCA	1 cut(s)	711
MseI	TTAA	1 cut(s)	507
Msp20I	TGGCCA	1 cut(s)	711
MspA1I	CMGCKG	1 cut(s)	162
MspI	CCGG	1 cut(s)	257
MspR9I	CCNGG	2 cut(s)	597, 972
Mva1269I	GAATGC	1 cut(s)	224
MvaI	CCWGG	2 cut(s)	597, 972
MwoI	GCNNNNNNNGC	6 cut(s)	11, 117, 415, 800, 920, 929
NdeII	GATC	1 cut(s)	253
NheI	GCTAGC	1 cut(s)	260
NlaIII	CATG	2 cut(s)	173, 377
NlaIV	GGNNCC	4 cut(s)	255, 492, 832, 976
NmuCI	GTSAC	2 cut(s)	201, 591
PaeR7I	CTCGAG	1 cut(s)	122
PctI	GAATGC	1 cut(s)	224
PdmI	GAANNNNTTC	1 cut(s)	316
PfeI	GAWTC	2 cut(s)	377, 605
PflMI	CCANNNNNTGG	1 cut(s)	992
PkrI	GCNGC	7 cut(s)	164, 420, 430, 433, 662, 670, 796
PleI	GAGTC	5 cut(s)	52, 98, 386, 778, 823
PpsI	GAGTC	5 cut(s)	52, 98, 386, 778, 823
Psp6I	CCWGG	2 cut(s)	595, 970
PspEI	GGTNACC	1 cut(s)	591
PspFI	CCCAGC	1 cut(s)	145
PspGI	CCWGG	2 cut(s)	595, 970
PspN4I	GGNNCC	4 cut(s)	255, 492, 832, 976
PspOMI	GGGCCC	1 cut(s)	490
PspPI	GGNCC	3 cut(s)	490, 491, 728
PspXI	VCTCGAGB	1 cut(s)	122
PstI	CTGCAG	3 cut(s)	113, 662, 916
PstNI	CAGNNNCTG	2 cut(s)	117, 992
PsuI	RGATCY	1 cut(s)	253
PvuII	CAGCTG	1 cut(s)	162
RsaI	GTAC	3 cut(s)	285, 456, 1009
RsaNI	GTAC	3 cut(s)	284, 455, 1008
SaqAI	TTAA	1 cut(s)	507
SatI	GCNGC	7 cut(s)	163, 419, 429, 432, 661, 669, 795
Sau3AI	GATC	1 cut(s)	253
Sau96I	GGNCC	3 cut(s)	490, 491, 728
SchI	GAGTC	5 cut(s)	52, 98, 386, 779, 824
ScrFI	CCNGG	2 cut(s)	597, 972
SduI	GDGCHC	4 cut(s)	448, 494, 746, 979
SexAI	ACCWGGT	1 cut(s)	970
SfaNI	GCATC	3 cut(s)	14, 430, 744
SfcI	CTRYAG	4 cut(s)	109, 564, 658, 912
Sfr274I	CTCGAG	1 cut(s)	122
SinI	GGWCC	1 cut(s)	728
SlaI	CTCGAG	1 cut(s)	122
SmlI	CTYRAG	2 cut(s)	122, 301
SmoI	CTYRAG	2 cut(s)	122, 301
Sse9I	AATT	6 cut(s)	225, 346, 508, 760, 918, 1086
SspMI	CTAG	4 cut(s)	261, 275, 438, 1043
StyD4I	CCNGG	2 cut(s)	595, 970
StyI	CCWWGG	1 cut(s)	265
TaaI	ACNGT	1 cut(s)	188
TaiI	ACGT	2 cut(s)	574, 904
TaqI	TCGA	1 cut(s)	123
TasI	AATT	6 cut(s)	225, 346, 508, 760, 918, 1086
TatI	WGTACW	1 cut(s)	283
TfiI	GAWTC	2 cut(s)	377, 605
Tru1I	TTAA	1 cut(s)	507
Tru9I	TTAA	1 cut(s)	507
TscAI	CASTG	2 cut(s)	191, 670
TseFI	GTSAC	2 cut(s)	201, 591
TseI	GCWGC	7 cut(s)	162, 418, 428, 431, 660, 668, 794
Tsp45I	GTSAC	2 cut(s)	201, 591
TspDTI	ATGAA	3 cut(s)	114, 332, 1110
TspGWI	ACGGA	1 cut(s)	1012
TspRI	CASTG	2 cut(s)	191, 670
Van91I	CCANNNNNTGG	1 cut(s)	992
VpaK11BI	GGWCC	1 cut(s)	728
XbaI	TCTAGA	1 cut(s)	274
XcmI	CCANNNNNNNNNTGG	1 cut(s)	51
XhoI	CTCGAG	1 cut(s)	122
XmnI	GAANNNNTTC	1 cut(s)	316
XspI	CTAG	4 cut(s)	261, 275, 438, 1043

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.