Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0012488

Physical Location & Seq

Genomic Coordinates Reverse (-)

16112136 .. 16115512

Gene Structure 3377 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1186700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGGCGTGTTTCGCTCCCTCTTCTTCTCTTAATCCAAAACTCATCTCAGCTCCCCCGTCTTCCTCCCCGGATCTTCTCGACGACTCGTATGAAGACTGCTGCAGCATCTGCCTCGAGCCGTTCAACTGCGACGACCCGGGCACTATAACCAGCTGCAAACACGAATATCATCTTCACTGTATATTAGAATGGTCACAAAGAAGTAAAGAATGCCCAATTTGTTGGCAGTCATTTTCCCTGAAGGATCCTGCTTTCCAAGAGCTTCTTGCTGCTATACAAAATGAGAAGAACTCAAGGTCAAGAAAAACATCTTCCATGGCACCCCAAACATATCATTCATATGAGGAGTTTGATGCTGAGCACGAATCTTTGTCAGATGACTCCGATTTGGATGAGCGCATCATGCAGCATCTTGCTGCCGCTTCTAGCAGAGCTCGTAATGCTCGCAGAAGGGAAAGACAGAGATCATCTGGGCTAGGTCCTTCCTGTGTTTTTGTTTTTTCCAATCATGAAAGTGTGCCTGGTTTCCAGGAAACATACCCAACTTCTCCAGAAGATTCGCCAACTTCTCAAAGACCATCTATTATTCAATCTCCACTGTCTTTTATCTGCAGCACTGCTGCCAATAGTGATATCCATTACATGCCGAGAGTGATTTATGGCCAGCCATCACCTGATGGTCCACACAGACCAAGCCCATCCGAGACTATCAATTTCCCTGATTCTATCAAATCCAAGTTGTCTGCTGCATCAGCCAGATACAAAGAGTCAATCTCAAGAAGCACTCGAGGCTTTAGGGAAAAGCTACTTGCTCGTAACAACTCAGTCAAGGAGATGACCAAAGGGGTTCAACGTGAGATAAGTGCAGGAATTGCTGGTGTTGCAAGAATGTTTGAGCACCTCGACCTTACTCCAAAGAAACCTGGAGCCCCTTCTCCTGTTTCTGCCCACAGCGGAGGAGAAACTTCAAACTTTTCCTGCAAGGGAAAAGGTGTGCTAGAGAATGTTATTGTTCATTCTTGTAGTAACAGTGGGAGAGTTGCTGATGAAAGTTCAGATGCACCGTCACGTCAAAGCTGCTACAGCAGGCCCAAGCGGACACTGTTGCCGTATGGAGTTTGGATTTGGCTCATCTCCAAATCGTTTCTGTTTTACCTCTCAAGCGTAATGAATGTGTTTTACCCTTCAAGCATTAGGCACCTCAGCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009553 GO:0009555 GO:0009561 GO:0009987 GO:0010498 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0051603 GO:0051726 GO:0055046 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_2 zf-RING_2 zf-rbx1

Protein Analysis

404

Amino Acids

44.66

Weight (kDa)

7.55

Isoelectric Point (pI)

69.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	29 - 74	1.7e-07	RING-H2 zinc finger domain
zf-ANAPC11	PF12861	29 - 82	3.9e-07	Anaphase-promoting complex subunit 11 RING-H2 finger
zf-RING_2	PF13639	33 - 74	3.1e-07	Ring finger domain
zf-C3HC4	PF00097	34 - 74	1e-05	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012488)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14220
fragaria_vesca	FvH4_4g14860
malus_domestica	MD13G1185900.v1.1 MD16G1186700.v1.1
prunus_persica	Prupe.1G153500_v2.0.a1
pyrus_communis	pycom13g16040 pycom16g15650
rosa_chinensis	RchiOBHm_Chr4g0417351 RchiOBHm_Chr4g0417381
rosa_laevigata	RLG00000007915
rosa_multiflora	Rmu_co8127690.1_g000001 Rmu_sc0004142.1_g000031
rosa_roxburghii	Rroxscaffold_5G00361110
rosa_rugosa	Rorug04G0147200
rosa_samantha	Rh4AG210700 Rh4BG211200 Rh4CG221600 Rh4DG208600
rosa_wichuraiana	Rw4G017800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	319, 1197
AciI	CCGC	3 cut(s)	420, 954, 1096
AclWI	GGATC	3 cut(s)	78, 239, 252
AcoI	YGGCCR	1 cut(s)	661
AcuI	CTGAAG	1 cut(s)	260
AgsI	TTSAA	5 cut(s)	124, 590, 851, 969, 1188
AjiI	CACGTC	1 cut(s)	1070
AjnI	CCWGG	3 cut(s)	520, 528, 922
AluBI	AGCT	6 cut(s)	50, 153, 262, 434, 805, 1077
AluI	AGCT	6 cut(s)	50, 153, 262, 434, 805, 1077
Alw21I	GWGCWC	3 cut(s)	363, 436, 900
Alw26I	GTCTC	1 cut(s)	698
AlwI	GGATC	3 cut(s)	78, 239, 252
AlwNI	CAGNNNCTG	1 cut(s)	108
Ama87I	CYCGRG	3 cut(s)	113, 136, 786
AoxI	GGCC	2 cut(s)	661, 1088
AspLEI	GCGC	1 cut(s)	399
AspS9I	GGNCC	3 cut(s)	479, 680, 1089
AsuC2I	CCSGG	3 cut(s)	68, 137, 138
AsuHPI	GGTGA	1 cut(s)	663
AvaI	CYCGRG	3 cut(s)	113, 136, 786
AvaII	GGWCC	2 cut(s)	479, 680
BaeGI	GKGCMC	1 cut(s)	143
BalI	TGGCCA	1 cut(s)	663
BamHI	GGATCC	1 cut(s)	244
BanI	GGYRCC	2 cut(s)	319, 1197
BanII	GRGCYC	2 cut(s)	436, 931
BbsI	GAAGAC	2 cut(s)	51, 99
Bbv12I	GWGCWC	3 cut(s)	363, 436, 900
BbvCI	CCTCAGC	1 cut(s)	1202
BccI	CCATC	4 cut(s)	586, 671, 676, 706
BceAI	ACGGC	2 cut(s)	103, 1093
BcgI	CGANNNNNNTGC	2 cut(s)	94, 128
BciT130I	CCWGG	3 cut(s)	522, 530, 924
BcnI	CCSGG	3 cut(s)	68, 137, 138
BcoDI	GTCTC	1 cut(s)	698
BfaI	CTAG	3 cut(s)	426, 476, 998
BfmI	CTRYAG	3 cut(s)	100, 610, 1081
BlpI	GCTNAGC	1 cut(s)	357
Bme1390I	CCNGG	6 cut(s)	68, 137, 138, 522, 530, 924
Bme18I	GGWCC	2 cut(s)	479, 680
BmeT110I	CYCGRG	3 cut(s)	113, 136, 786
BmgBI	CACGTC	1 cut(s)	1070
BmgT120I	GGNCC	3 cut(s)	479, 680, 1089
BmiI	GGNNCC	4 cut(s)	246, 321, 928, 1199
BmrFI	CCNGG	6 cut(s)	68, 137, 138, 522, 530, 924
BmsI	GCATC	6 cut(s)	114, 343, 408, 418, 758, 1048
BpiI	GAAGAC	2 cut(s)	51, 99
BplI	GAGNNNNNCTC	4 cut(s)	275, 307, 758, 790
BpmI	CTGGAG	2 cut(s)	534, 945
Bpu10I	CCTNAGC	1 cut(s)	1202
Bpu1102I	GCTNAGC	1 cut(s)	357
BpuEI	CTTGAG	3 cut(s)	277, 760, 1144
BpuMI	CCSGG	3 cut(s)	68, 137, 138
BsaJI	CCNNGG	3 cut(s)	66, 136, 315
BseBI	CCWGG	3 cut(s)	522, 530, 924
BseDI	CCNNGG	3 cut(s)	66, 136, 315
BseGI	GGATG	2 cut(s)	397, 698
BseMII	CTCAG	3 cut(s)	60, 348, 837
BseRI	GAGGAG	2 cut(s)	359, 972
BseSI	GKGCMC	1 cut(s)	143
BsgI	GTGCAG	1 cut(s)	885
BshFI	GGCC	2 cut(s)	663, 1090
BshNI	GGYRCC	2 cut(s)	319, 1197
BsiHKAI	GWGCWC	3 cut(s)	363, 436, 900
BsiHKCI	CYCGRG	3 cut(s)	113, 136, 786
BsiSI	CCGG	2 cut(s)	68, 137
BsmAI	GTCTC	1 cut(s)	698
BsmI	GAATGC	1 cut(s)	215
BsnI	GGCC	2 cut(s)	663, 1090
BsoBI	CYCGRG	3 cut(s)	113, 136, 786
Bsp1286I	GDGCHC	5 cut(s)	143, 363, 436, 900, 931
Bsp143I	GATC	3 cut(s)	70, 244, 464
Bsp1720I	GCTNAGC	1 cut(s)	357
Bsp19I	CCATGG	1 cut(s)	315
BspACI	CCGC	3 cut(s)	420, 954, 1096
BspANI	GGCC	2 cut(s)	663, 1090
BspCNI	CTCAG	3 cut(s)	59, 349, 836
BspHI	TCATGA	1 cut(s)	508
BspLI	GGNNCC	4 cut(s)	246, 321, 928, 1199
BspMAI	CTGCAG	2 cut(s)	104, 614
BspPI	GGATC	3 cut(s)	78, 239, 252
BspT107I	GGYRCC	2 cut(s)	319, 1197
BssECI	CCNNGG	3 cut(s)	66, 136, 315
BssMI	GATC	3 cut(s)	70, 244, 464
BssT1I	CCWWGG	1 cut(s)	315
Bst2UI	CCWGG	3 cut(s)	522, 530, 924
Bst4CI	ACNGT	5 cut(s)	179, 600, 1031, 1065, 1104
Bst6I	CTCTTC	1 cut(s)	25
BstAPI	GCANNNNNTGC	2 cut(s)	108, 872
BstC8I	GCNNGC	3 cut(s)	445, 665, 1088
BstDEI	CTNAG	4 cut(s)	46, 357, 823, 1202
BstDSI	CCRYGG	1 cut(s)	315
BstF5I	GGATG	2 cut(s)	397, 698
BstHHI	GCGC	1 cut(s)	399
BstKTI	GATC	3 cut(s)	73, 247, 467
BstMAI	GTCTC	1 cut(s)	698
BstMBI	GATC	3 cut(s)	70, 244, 464
BstMWI	GCNNNNNNNGC	9 cut(s)	11, 108, 403, 440, 752, 789, 872, 881, 1083
BstNI	CCWGG	3 cut(s)	522, 530, 924
BstNSI	RCATGY	1 cut(s)	646
BstSCI	CCNGG	6 cut(s)	66, 135, 136, 520, 528, 922
BstSFI	CTRYAG	3 cut(s)	100, 610, 1081
BstSLI	GKGCMC	1 cut(s)	143
BstV2I	GAAGAC	2 cut(s)	51, 99
BstX2I	RGATCY	2 cut(s)	70, 244
BstXI	CCANNNNNNTGG	1 cut(s)	222
BstYI	RGATCY	2 cut(s)	70, 244
BsuRI	GGCC	2 cut(s)	663, 1090
BtgI	CCRYGG	1 cut(s)	315
BtrI	CACGTC	1 cut(s)	1070
BtsCI	GGATG	2 cut(s)	397, 698
BtsI	GCAGTG	1 cut(s)	615
BtsIMutI	CAGTG	5 cut(s)	175, 596, 615, 1036, 1100
Cac8I	GCNNGC	3 cut(s)	445, 665, 1088
CaiI	CAGNNNCTG	1 cut(s)	108
CciI	TCATGA	1 cut(s)	508
CfoI	GCGC	1 cut(s)	399
Cfr13I	GGNCC	3 cut(s)	479, 680, 1089
Cfr9I	CCCGGG	1 cut(s)	136
CviAII	CATG	4 cut(s)	316, 403, 509, 643
DdeI	CTNAG	4 cut(s)	46, 357, 823, 1202
DpnI	GATC	3 cut(s)	72, 246, 466
DpnII	GATC	3 cut(s)	70, 244, 464
EaeI	YGGCCR	1 cut(s)	661
Eam1104I	CTCTTC	1 cut(s)	25
EarI	CTCTTC	1 cut(s)	25
Ecl136II	GAGCTC	1 cut(s)	434
Eco130I	CCWWGG	1 cut(s)	315
Eco24I	GRGCYC	2 cut(s)	436, 931
Eco32I	GATATC	1 cut(s)	634
Eco47I	GGWCC	2 cut(s)	479, 680
Eco53kI	GAGCTC	1 cut(s)	434
Eco57I	CTGAAG	1 cut(s)	260
Eco88I	CYCGRG	3 cut(s)	113, 136, 786
EcoICRI	GAGCTC	1 cut(s)	434
EcoO109I	RGGNCCY	1 cut(s)	479
EcoRII	CCWGG	3 cut(s)	520, 528, 922
EcoRV	GATATC	1 cut(s)	634
EcoT14I	CCWWGG	1 cut(s)	315
EcoT38I	GRGCYC	2 cut(s)	436, 931
ErhI	CCWWGG	1 cut(s)	315
FaeI	CATG	4 cut(s)	319, 406, 512, 646
FalI	AAGNNNNNCTT	2 cut(s)	249, 281
FatI	CATG	4 cut(s)	315, 402, 508, 642
FauNDI	CATATG	1 cut(s)	340
FokI	GGATG	2 cut(s)	404, 685
FriOI	GRGCYC	2 cut(s)	436, 931
FspBI	CTAG	3 cut(s)	426, 476, 998
GlaI	GCGC	1 cut(s)	398
GsuI	CTGGAG	2 cut(s)	534, 945
HaeIII	GGCC	2 cut(s)	663, 1090
HapII	CCGG	2 cut(s)	68, 137
HhaI	GCGC	1 cut(s)	399
Hin1II	CATG	4 cut(s)	319, 406, 512, 646
Hin6I	GCGC	1 cut(s)	397
HinP1I	GCGC	1 cut(s)	397
HinfI	GANTC	6 cut(s)	83, 365, 380, 557, 722, 767
HpaII	CCGG	2 cut(s)	68, 137
HphI	GGTGA	1 cut(s)	663
Hpy166II	GTNNAC	1 cut(s)	683
Hpy188I	TCNGA	4 cut(s)	376, 385, 703, 1057
Hpy188III	TCNNGA	5 cut(s)	77, 300, 509, 551, 777
Hpy8I	GTNNAC	1 cut(s)	683
Hpy99I	CGWCG	2 cut(s)	83, 134
HpyAV	CCTTC	5 cut(s)	235, 444, 492, 942, 1194
HpyCH4III	ACNGT	5 cut(s)	179, 600, 1031, 1065, 1104
HpyCH4IV	ACGT	2 cut(s)	853, 1069
HpyCH4V	TGCA	9 cut(s)	102, 156, 406, 612, 749, 866, 884, 981, 1061
HpyF10VI	GCNNNNNNNGC	9 cut(s)	11, 108, 403, 440, 752, 789, 872, 881, 1083
HpyF3I	CTNAG	4 cut(s)	46, 357, 823, 1202
HpySE526I	ACGT	2 cut(s)	853, 1069
Hsp92II	CATG	4 cut(s)	319, 406, 512, 646
HspAI	GCGC	1 cut(s)	397
Kzo9I	GATC	3 cut(s)	70, 244, 464
LmnI	GCTCC	3 cut(s)	19, 55, 926
LweI	GCATC	6 cut(s)	114, 343, 408, 418, 758, 1048
MaeI	CTAG	3 cut(s)	426, 476, 998
MaeII	ACGT	2 cut(s)	853, 1069
MaeIII	GTNAC	4 cut(s)	192, 815, 1025, 1065
MalI	GATC	3 cut(s)	72, 246, 466
MboI	GATC	3 cut(s)	70, 244, 464
MboII	GAAGA	9 cut(s)	12, 15, 51, 65, 104, 164, 298, 303, 566
MflI	RGATCY	2 cut(s)	70, 244
MhlI	GDGCHC	5 cut(s)	143, 363, 436, 900, 931
MlsI	TGGCCA	1 cut(s)	663
MluCI	AATT	3 cut(s)	216, 712, 870
MluNI	TGGCCA	1 cut(s)	663
MlyI	GAGTC	3 cut(s)	77, 374, 776
MnlI	CCTC	9 cut(s)	28, 73, 122, 337, 782, 911, 950, 1166, 1211
Mox20I	TGGCCA	1 cut(s)	663
MscI	TGGCCA	1 cut(s)	663
MseI	TTAA	1 cut(s)	30
MslI	CAYNNNNRTG	2 cut(s)	339, 513
Msp20I	TGGCCA	1 cut(s)	663
MspA1I	CMGCKG	2 cut(s)	153, 954
MspI	CCGG	2 cut(s)	68, 137
MspR9I	CCNGG	6 cut(s)	68, 137, 138, 522, 530, 924
Mva1269I	GAATGC	1 cut(s)	215
MvaI	CCWGG	3 cut(s)	522, 530, 924
MwoI	GCNNNNNNNGC	9 cut(s)	11, 108, 403, 440, 752, 789, 872, 881, 1083
NciI	CCSGG	3 cut(s)	68, 137, 138
NcoI	CCATGG	1 cut(s)	315
NdeI	CATATG	1 cut(s)	340
NdeII	GATC	3 cut(s)	70, 244, 464
NlaIII	CATG	4 cut(s)	319, 406, 512, 646
NlaIV	GGNNCC	4 cut(s)	246, 321, 928, 1199
NmeAIII	GCCGAG	1 cut(s)	672
NmuCI	GTSAC	2 cut(s)	192, 1065
NspI	RCATGY	1 cut(s)	646
PaeR7I	CTCGAG	2 cut(s)	113, 786
PagI	TCATGA	1 cut(s)	508
PctI	GAATGC	1 cut(s)	215
PfeI	GAWTC	3 cut(s)	365, 557, 722
PfoI	TCCNGGA	1 cut(s)	528
PleI	GAGTC	3 cut(s)	77, 374, 775
PpsI	GAGTC	3 cut(s)	77, 374, 775
PpuMI	RGGWCCY	1 cut(s)	479
Psp124BI	GAGCTC	1 cut(s)	436
Psp5II	RGGWCCY	1 cut(s)	479
Psp6I	CCWGG	3 cut(s)	520, 528, 922
PspGI	CCWGG	3 cut(s)	520, 528, 922
PspN4I	GGNNCC	4 cut(s)	246, 321, 928, 1199
PspPI	GGNCC	3 cut(s)	479, 680, 1089
PspPPI	RGGWCCY	1 cut(s)	479
PspXI	VCTCGAGB	2 cut(s)	113, 786
PstI	CTGCAG	2 cut(s)	104, 614
PstNI	CAGNNNCTG	1 cut(s)	108
PsuI	RGATCY	2 cut(s)	70, 244
PvuII	CAGCTG	1 cut(s)	153
RseI	CAYNNNNRTG	2 cut(s)	339, 513
SacI	GAGCTC	1 cut(s)	436
SaqAI	TTAA	1 cut(s)	30
Sau3AI	GATC	3 cut(s)	70, 244, 464
Sau96I	GGNCC	3 cut(s)	479, 680, 1089
SchI	GAGTC	3 cut(s)	77, 374, 776
ScrFI	CCNGG	6 cut(s)	68, 137, 138, 522, 530, 924
SduI	GDGCHC	5 cut(s)	143, 363, 436, 900, 931
SfaNI	GCATC	6 cut(s)	114, 343, 408, 418, 758, 1048
SfcI	CTRYAG	3 cut(s)	100, 610, 1081
Sfr274I	CTCGAG	2 cut(s)	113, 786
SinI	GGWCC	2 cut(s)	479, 680
SlaI	CTCGAG	2 cut(s)	113, 786
SmaI	CCCGGG	1 cut(s)	138
SmiMI	CAYNNNNRTG	2 cut(s)	339, 513
SmlI	CTYRAG	5 cut(s)	113, 292, 775, 786, 1159
SmoI	CTYRAG	5 cut(s)	113, 292, 775, 786, 1159
Sse9I	AATT	3 cut(s)	216, 712, 870
SsiI	CCGC	3 cut(s)	420, 954, 1096
SspMI	CTAG	3 cut(s)	426, 476, 998
SstI	GAGCTC	1 cut(s)	436
StyD4I	CCNGG	6 cut(s)	66, 135, 136, 520, 528, 922
StyI	CCWWGG	1 cut(s)	315
TaaI	ACNGT	5 cut(s)	179, 600, 1031, 1065, 1104
TaiI	ACGT	2 cut(s)	856, 1072
TaqI	TCGA	4 cut(s)	78, 114, 787, 903
TasI	AATT	3 cut(s)	216, 712, 870
TauI	GCSGC	1 cut(s)	422
TfiI	GAWTC	3 cut(s)	365, 557, 722
Tru1I	TTAA	1 cut(s)	30
Tru9I	TTAA	1 cut(s)	30
TscAI	CASTG	5 cut(s)	182, 603, 622, 1036, 1107
TseFI	GTSAC	2 cut(s)	192, 1065
Tsp45I	GTSAC	2 cut(s)	192, 1065
TspDTI	ATGAA	6 cut(s)	105, 327, 525, 1004, 1062, 1184
TspMI	CCCGGG	1 cut(s)	136
TspRI	CASTG	5 cut(s)	182, 603, 622, 1036, 1107
VpaK11BI	GGWCC	2 cut(s)	479, 680
XceI	RCATGY	1 cut(s)	646
XhoI	CTCGAG	2 cut(s)	113, 786
XmaI	CCCGGG	1 cut(s)	136
XspI	CTAG	3 cut(s)	426, 476, 998

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.