Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8127690.1

Orthogroup ID

OG0012488

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 627

Gene Structure 627 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8127690.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 463 bp

ttatttgtcaattaactgttttgttcagccaagggcttctagatgttgtacagaatgagaagcgctcaagggcaagaaacatttcttccattgcccccccaacttttcataattcctctgaggattttgactttgaacatgattcgttctcagatgactccgatttggacgagcgtattatgcagcatcttgctgctgcgtctagcagggctcgttatgtacgcagaagggaaagacagagatattctggactgggcccttccaatggttttaatttttcccctcgtgaaaatgtttctggtatggagcaagcacacccaacttctcctgtagaacgtccaagtatcacctatgggtcaccaggaggtgattcaccaacttctccaagaccacctgttgttcaacctccaccatcttttatctgcagcactgctgccaacaatgatgttcctttcaaaccaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009553 GO:0009555 GO:0009561 GO:0009987 GO:0010498 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0051603 GO:0051726 GO:0055046 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_2 zf-RING_2 zf-rbx1

Protein Analysis

153

Amino Acids

16.92

Weight (kDa)

6.08

Isoelectric Point (pI)

70.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012488)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14220
fragaria_vesca	FvH4_4g14860
malus_domestica	MD13G1185900.v1.1 MD16G1186700.v1.1
prunus_persica	Prupe.1G153500_v2.0.a1
pyrus_communis	pycom13g16040 pycom16g15650
rosa_chinensis	RchiOBHm_Chr4g0417351 RchiOBHm_Chr4g0417381
rosa_laevigata	RLG00000007915
rosa_multiflora	Rmu_co8127690.1_g000001 Rmu_sc0004142.1_g000031
rosa_roxburghii	Rroxscaffold_5G00361110
rosa_rugosa	Rorug04G0147200
rosa_samantha	Rh4AG210700 Rh4BG211200 Rh4CG221600 Rh4DG208600
rosa_wichuraiana	Rw4G017800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	2 cut(s)	50, 221
AfeI	AGCGCT	1 cut(s)	64
AfiI	CCNNNNNNNGG	1 cut(s)	265
AgsI	TTSAA	3 cut(s)	136, 403, 456
AjnI	CCWGG	1 cut(s)	360
Aor51HI	AGCGCT	1 cut(s)	64
AoxI	GGCC	1 cut(s)	255
ApaI	GGGCCC	1 cut(s)	259
ApeKI	GCWGC	5 cut(s)	183, 193, 196, 425, 433
Asp700I	GAANNNNTTC	1 cut(s)	81
AspLEI	GCGC	1 cut(s)	65
AspS9I	GGNCC	2 cut(s)	255, 256
AsuHPI	GGTGA	4 cut(s)	339, 350, 365, 379
BaeGI	GKGCMC	1 cut(s)	259
BanII	GRGCYC	2 cut(s)	213, 259
BauI	CACGAG	1 cut(s)	284
BbvI	GCAGC	5 cut(s)	180, 183, 195, 420, 437
BccI	CCATC	1 cut(s)	420
BciT130I	CCWGG	1 cut(s)	362
BfaI	CTAG	2 cut(s)	40, 203
BfmI	CTRYAG	2 cut(s)	329, 423
BfoI	RGCGCY	1 cut(s)	66
BisI	GCNGC	5 cut(s)	184, 194, 197, 426, 434
BlsI	GCNGC	5 cut(s)	185, 195, 198, 427, 435
Bme1390I	CCNGG	1 cut(s)	362
BmgT120I	GGNCC	2 cut(s)	255, 256
BmiI	GGNNCC	1 cut(s)	257
BmrFI	CCNGG	1 cut(s)	362
BmrI	ACTGGG	1 cut(s)	262
BmsI	GCATC	1 cut(s)	195
BmuI	ACTGGG	1 cut(s)	262
BplI	GAGNNNNNCTC	2 cut(s)	49, 81
BpuEI	CTTGAG	1 cut(s)	51
BsaJI	CCNNGG	1 cut(s)	30
Bsc4I	CCNNNNNNNGG	1 cut(s)	265
Bse1I	ACTGG	1 cut(s)	257
Bse3DI	GCAATG	1 cut(s)	89
BseBI	CCWGG	1 cut(s)	362
BseDI	CCNNGG	1 cut(s)	30
BseLI	CCNNNNNNNGG	1 cut(s)	265
BseMI	GCAATG	1 cut(s)	89
BseMII	CTCAG	2 cut(s)	110, 164
BseNI	ACTGG	1 cut(s)	257
BseSI	GKGCMC	1 cut(s)	259
BseXI	GCAGC	5 cut(s)	180, 183, 195, 420, 437
BshFI	GGCC	1 cut(s)	257
BslI	CCNNNNNNNGG	1 cut(s)	265
BsnI	GGCC	1 cut(s)	257
Bsp120I	GGGCCC	1 cut(s)	255
Bsp1286I	GDGCHC	2 cut(s)	213, 259
Bsp1407I	TGTACA	1 cut(s)	48
BspANI	GGCC	1 cut(s)	257
BspCNI	CTCAG	2 cut(s)	111, 163
BspLI	GGNNCC	1 cut(s)	257
BspMAI	CTGCAG	1 cut(s)	427
BsrDI	GCAATG	1 cut(s)	89
BsrGI	TGTACA	1 cut(s)	48
BsrI	ACTGG	1 cut(s)	257
BssECI	CCNNGG	1 cut(s)	30
BssSI	CACGAG	1 cut(s)	284
BssT1I	CCWWGG	1 cut(s)	30
Bst2BI	CACGAG	1 cut(s)	284
Bst2UI	CCWGG	1 cut(s)	362
Bst4CI	ACNGT	1 cut(s)	18
BstAUI	TGTACA	1 cut(s)	48
BstC8I	GCNNGC	1 cut(s)	311
BstDEI	CTNAG	2 cut(s)	119, 150
BstEII	GGTNACC	1 cut(s)	356
BstH2I	RGCGCY	1 cut(s)	66
BstHHI	GCGC	1 cut(s)	65
BstMWI	GCNNNNNNNGC	1 cut(s)	180
BstNI	CCWGG	1 cut(s)	362
BstPI	GGTNACC	1 cut(s)	356
BstSCI	CCNGG	1 cut(s)	360
BstSFI	CTRYAG	2 cut(s)	329, 423
BstSLI	GKGCMC	1 cut(s)	259
BstV1I	GCAGC	5 cut(s)	180, 183, 195, 420, 437
BsuRI	GGCC	1 cut(s)	257
BtsI	GCAGTG	1 cut(s)	428
BtsIMutI	CAGTG	1 cut(s)	428
Cac8I	GCNNGC	1 cut(s)	311
CfoI	GCGC	1 cut(s)	65
Cfr13I	GGNCC	2 cut(s)	255, 256
CseI	GACGC	1 cut(s)	188
Csp6I	GTAC	2 cut(s)	49, 220
CviAII	CATG	1 cut(s)	139
CviJI	RGCY	4 cut(s)	29, 36, 211, 257
CviKI_1	RGCY	4 cut(s)	29, 36, 211, 257
CviQI	GTAC	2 cut(s)	49, 220
DdeI	CTNAG	2 cut(s)	119, 150
Eco130I	CCWWGG	1 cut(s)	30
Eco24I	GRGCYC	2 cut(s)	213, 259
Eco47III	AGCGCT	1 cut(s)	64
Eco91I	GGTNACC	1 cut(s)	356
EcoO109I	RGGNCCY	1 cut(s)	256
EcoO65I	GGTNACC	1 cut(s)	356
EcoRII	CCWGG	1 cut(s)	360
EcoT14I	CCWWGG	1 cut(s)	30
EcoT38I	GRGCYC	2 cut(s)	213, 259
ErhI	CCWWGG	1 cut(s)	30
FaeI	CATG	1 cut(s)	142
FaiI	YATR	6 cut(s)	110, 140, 181, 218, 304, 353
FatI	CATG	1 cut(s)	138
Fnu4HI	GCNGC	5 cut(s)	184, 194, 197, 426, 434
FriOI	GRGCYC	2 cut(s)	213, 259
Fsp4HI	GCNGC	5 cut(s)	184, 194, 197, 426, 434
FspBI	CTAG	2 cut(s)	40, 203
GlaI	GCGC	1 cut(s)	64
GluI	GCNGC	5 cut(s)	184, 194, 197, 426, 434
HaeII	RGCGCY	1 cut(s)	66
HaeIII	GGCC	1 cut(s)	257
HgaI	GACGC	1 cut(s)	188
HhaI	GCGC	1 cut(s)	65
Hin1II	CATG	1 cut(s)	142
Hin6I	GCGC	1 cut(s)	63
HinP1I	GCGC	1 cut(s)	63
HinfI	GANTC	3 cut(s)	142, 157, 370
HphI	GGTGA	4 cut(s)	339, 350, 365, 379
Hpy188I	TCNGA	3 cut(s)	120, 153, 162
Hpy188III	TCNNGA	3 cut(s)	40, 248, 286
HpyAV	CCTTC	2 cut(s)	221, 269
HpyCH4III	ACNGT	1 cut(s)	18
HpyCH4IV	ACGT	1 cut(s)	336
HpyCH4V	TGCA	2 cut(s)	183, 425
HpyF10VI	GCNNNNNNNGC	1 cut(s)	180
HpyF3I	CTNAG	2 cut(s)	119, 150
HpySE526I	ACGT	1 cut(s)	336
Hsp92II	CATG	1 cut(s)	142
HspAI	GCGC	1 cut(s)	63
LmnI	GCTCC	1 cut(s)	306
LpnPI	CCDG	8 cut(s)	192, 233, 238, 284, 341, 347, 374, 407
Lsp1109I	GCAGC	5 cut(s)	180, 183, 195, 420, 437
LweI	GCATC	1 cut(s)	195
MaeI	CTAG	2 cut(s)	40, 203
MaeII	ACGT	1 cut(s)	336
MaeIII	GTNAC	1 cut(s)	356
MboII	GAAGA	1 cut(s)	77
MhlI	GDGCHC	2 cut(s)	213, 259
MluCI	AATT	3 cut(s)	10, 111, 273
MlyI	GAGTC	1 cut(s)	151
MnlI	CCTC	5 cut(s)	114, 126, 293, 358, 416
MroXI	GAANNNNTTC	1 cut(s)	81
MseI	TTAA	2 cut(s)	13, 272
MspR9I	CCNGG	1 cut(s)	362
MvaI	CCWGG	1 cut(s)	362
MwoI	GCNNNNNNNGC	1 cut(s)	180
NlaIII	CATG	1 cut(s)	142
NlaIV	GGNNCC	1 cut(s)	257
NmuCI	GTSAC	1 cut(s)	356
PdmI	GAANNNNTTC	1 cut(s)	81
PfeI	GAWTC	2 cut(s)	142, 370
PkrI	GCNGC	5 cut(s)	185, 195, 198, 427, 435
PleI	GAGTC	1 cut(s)	151
PpsI	GAGTC	1 cut(s)	151
Psp6I	CCWGG	1 cut(s)	360
PspEI	GGTNACC	1 cut(s)	356
PspGI	CCWGG	1 cut(s)	360
PspN4I	GGNNCC	1 cut(s)	257
PspOMI	GGGCCC	1 cut(s)	255
PspPI	GGNCC	2 cut(s)	255, 256
PstI	CTGCAG	1 cut(s)	427
RsaI	GTAC	2 cut(s)	50, 221
RsaNI	GTAC	2 cut(s)	49, 220
SaqAI	TTAA	2 cut(s)	13, 272
SatI	GCNGC	5 cut(s)	184, 194, 197, 426, 434
Sau96I	GGNCC	2 cut(s)	255, 256
SchI	GAGTC	1 cut(s)	151
ScrFI	CCNGG	1 cut(s)	362
SduI	GDGCHC	2 cut(s)	213, 259
SetI	ASST	5 cut(s)	339, 352, 369, 396, 408
SfaNI	GCATC	1 cut(s)	195
SfcI	CTRYAG	2 cut(s)	329, 423
SmlI	CTYRAG	1 cut(s)	66
SmoI	CTYRAG	1 cut(s)	66
Sse9I	AATT	3 cut(s)	10, 111, 273
SspMI	CTAG	2 cut(s)	40, 203
StyD4I	CCNGG	1 cut(s)	360
StyI	CCWWGG	1 cut(s)	30
TaaI	ACNGT	1 cut(s)	18
TaiI	ACGT	1 cut(s)	339
TasI	AATT	3 cut(s)	10, 111, 273
TatI	WGTACW	1 cut(s)	48
TfiI	GAWTC	2 cut(s)	142, 370
Tru1I	TTAA	2 cut(s)	13, 272
Tru9I	TTAA	2 cut(s)	13, 272
TscAI	CASTG	1 cut(s)	435
TseFI	GTSAC	1 cut(s)	356
TseI	GCWGC	5 cut(s)	183, 193, 196, 425, 433
Tsp45I	GTSAC	1 cut(s)	356
TspDTI	ATGAA	1 cut(s)	97
TspRI	CASTG	1 cut(s)	435
XbaI	TCTAGA	1 cut(s)	39
XmnI	GAANNNNTTC	1 cut(s)	81
XspI	CTAG	2 cut(s)	40, 203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.