Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0012488

Physical Location & Seq

Genomic Coordinates Reverse (-)

25694777 .. 25697834

Gene Structure 3058 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0147200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGACAGACTAAAATTAGCTTCTTTACCGCAGGCTGTCTTTGGACAAACTGGCCAAGAAAATGGGTCAGCACCTACTCCTAGTGCGTTTGGTGCAATGGCTAGTTTCCTTGTCCCTAAGCTTTCAGTTGGCCTGATTGGAAATTTGCCTACTGAAAGATCGTCTAATTCCATTGATCAAACAAAACTCCTTAAAAAGGAAAAGCACACTGTTCGTCCTCCTGTGAAGCATAATTGGTCACTCCCTGGAAGTAGTATGCATTTGAAGCCTCCACAGATTTTTCAGCATGAATTGATTCAGAATTTCTCATTTAATATGTTCTGCAAGATTCCTGTGAACAGGGTTCGAACATATGGCGACTTGCGAAATGTTCTAATGAAGAGAATATTTCTTTCTGCTTTGCATTTCCGAATTAATACAAGATACAAGAGTTCAAACCCACCATTTACTTCAATTGAATTGGATCATAGTGACTCTAGAAGGGAAGGATGCACAGTCACTACTCTTACTGTAACTGCCGAACCCAAGAATTGGCAAACTGCAATAAGAGTTGCTGTTCACGAGGTTAGAAGGCTCAAAGAATTTGGTGTTACTAAGGGTGAATTGACACGTTATATAGATGCTTTATTAAAAGATAGTGAGCATCTGGCGGCTATGATAGATAATGTATCTTCGGTTGATAATTTGGATTTTATTATGGAGAGTGATGCGCTGGGCCATACAGTAATGGATCAGAGACAAGGACATGACAGTCTGGTTGCTGTTGCTGGAACTGTTACTCTTAAAGAGGTTAACTCTATTGGCGCCAAGGTGTTGGAATTTGTTTCTGATTTTGGAAAGCCTACTGCACCCCTTCCTGCAGCGATCGTCGTTTGTGTTCCAAAGAAAGTGCATGTTGATGGAATGGGTGAAACTGAGTTCACCATTTCCCCTGATGAGATTACAGCTGCTACGAGAGCTGGATTGGAGGACCTCATTGAACCTGAGCCAGAGCTTGAAGTGCCAAAAGAATTGATATCTTCATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009553 GO:0009555 GO:0009561 GO:0009987 GO:0010498 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0051603 GO:0051726 GO:0055046 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_2 zf-RING_2 zf-rbx1

Protein Analysis

342

Amino Acids

37.69

Weight (kDa)

6.61

Isoelectric Point (pI)

35.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M16_C	PF05193	44 - 209	5.5e-06	Peptidase M16 inactive domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012488)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14220
fragaria_vesca	FvH4_4g14860
malus_domestica	MD13G1185900.v1.1 MD16G1186700.v1.1
prunus_persica	Prupe.1G153500_v2.0.a1
pyrus_communis	pycom13g16040 pycom16g15650
rosa_chinensis	RchiOBHm_Chr4g0417351 RchiOBHm_Chr4g0417381
rosa_laevigata	RLG00000007915
rosa_multiflora	Rmu_co8127690.1_g000001 Rmu_sc0004142.1_g000031
rosa_roxburghii	Rroxscaffold_5G00361110
rosa_rugosa	Rorug04G0147200
rosa_samantha	Rh4AG210700 Rh4BG211200 Rh4CG221600 Rh4DG208600
rosa_wichuraiana	Rw4G017800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	750
AccB1I	GGYRCC	1 cut(s)	803
AccB7I	CCANNNNNTGG	1 cut(s)	531
AciI	CCGC	2 cut(s)	29, 650
AclWI	GGATC	2 cut(s)	471, 738
AcoI	YGGCCR	1 cut(s)	52
AcsI	RAATTY	4 cut(s)	142, 301, 581, 818
AcyI	GRCGYC	1 cut(s)	804
AfiI	CCNNNNNNNGG	2 cut(s)	196, 531
AflIII	ACRYGT	1 cut(s)	608
AgsI	TTSAA	6 cut(s)	265, 435, 453, 458, 980, 998
AjnI	CCWGG	1 cut(s)	244
AluBI	AGCT	5 cut(s)	20, 121, 947, 959, 994
AluI	AGCT	5 cut(s)	20, 121, 947, 959, 994
Alw26I	GTCTC	1 cut(s)	730
AlwI	GGATC	2 cut(s)	471, 738
AoxI	GGCC	3 cut(s)	52, 130, 715
ApeKI	GCWGC	2 cut(s)	860, 947
ApoI	RAATTY	4 cut(s)	142, 301, 581, 818
AseI	ATTAAT	1 cut(s)	414
Asp700I	GAANNNNTTC	1 cut(s)	294
AspLEI	GCGC	2 cut(s)	712, 806
AspS9I	GGNCC	2 cut(s)	715, 970
AsuHPI	GGTGA	3 cut(s)	611, 913, 920
AsuII	TTCGAA	1 cut(s)	346
AvaII	GGWCC	1 cut(s)	970
BaeI	ACNNNNGTAYC	2 cut(s)	415, 448
BalI	TGGCCA	1 cut(s)	54
BanI	GGYRCC	1 cut(s)	803
BauI	CACGAG	1 cut(s)	560
BbvI	GCAGC	2 cut(s)	872, 934
BccI	CCATC	1 cut(s)	893
BcgI	CGANNNNNNTGC	2 cut(s)	194, 228
BciT130I	CCWGG	1 cut(s)	246
BclI	TGATCA	1 cut(s)	175
BcoDI	GTCTC	1 cut(s)	730
BfaI	CTAG	3 cut(s)	81, 102, 477
BfmI	CTRYAG	1 cut(s)	858
BfoI	RGCGCY	1 cut(s)	807
BisI	GCNGC	3 cut(s)	651, 861, 948
BlsI	GCNGC	3 cut(s)	652, 862, 949
Bme1390I	CCNGG	1 cut(s)	246
Bme18I	GGWCC	1 cut(s)	970
BmgT120I	GGNCC	2 cut(s)	715, 970
BmiI	GGNNCC	1 cut(s)	805
BmrFI	CCNGG	1 cut(s)	246
BmsI	GCATC	4 cut(s)	479, 610, 652, 697
BplI	GAGNNNNNCTC	2 cut(s)	779, 811
Bpu10I	CCTNAGC	2 cut(s)	117, 984
Bpu14I	TTCGAA	1 cut(s)	346
BsaHI	GRCGYC	1 cut(s)	804
BsaJI	CCNNGG	2 cut(s)	244, 807
Bsc4I	CCNNNNNNNGG	2 cut(s)	196, 531
Bse1I	ACTGG	1 cut(s)	55
Bse3DI	GCAATG	1 cut(s)	102
BseBI	CCWGG	1 cut(s)	246
BseDI	CCNNGG	2 cut(s)	244, 807
BseGI	GGATG	1 cut(s)	494
BseLI	CCNNNNNNNGG	2 cut(s)	196, 531
BseMI	GCAATG	1 cut(s)	102
BseMII	CTCAG	2 cut(s)	906, 975
BseNI	ACTGG	1 cut(s)	55
BseXI	GCAGC	2 cut(s)	872, 934
BseYI	CCCAGC	1 cut(s)	712
BsgI	GTGCAG	1 cut(s)	831
Bsh1285I	CGRYCG	1 cut(s)	867
BshFI	GGCC	3 cut(s)	54, 132, 717
BshNI	GGYRCC	1 cut(s)	803
BsiEI	CGRYCG	1 cut(s)	867
BslFI	GGGAC	1 cut(s)	98
BslI	CCNNNNNNNGG	2 cut(s)	196, 531
BsmAI	GTCTC	1 cut(s)	730
BsmFI	GGGAC	1 cut(s)	98
BsnI	GGCC	3 cut(s)	54, 132, 717
Bsp119I	TTCGAA	1 cut(s)	346
Bsp143I	GATC	5 cut(s)	158, 175, 463, 730, 864
BspACI	CCGC	2 cut(s)	29, 650
BspANI	GGCC	3 cut(s)	54, 132, 717
BspCNI	CTCAG	2 cut(s)	907, 976
BspLI	GGNNCC	1 cut(s)	805
BspMAI	CTGCAG	1 cut(s)	862
BspPI	GGATC	2 cut(s)	471, 738
BspT104I	TTCGAA	1 cut(s)	346
BspT107I	GGYRCC	1 cut(s)	803
BsrDI	GCAATG	1 cut(s)	102
BsrI	ACTGG	1 cut(s)	55
BssECI	CCNNGG	2 cut(s)	244, 807
BssMI	GATC	5 cut(s)	158, 175, 463, 730, 864
BssNI	GRCGYC	1 cut(s)	804
BssSI	CACGAG	1 cut(s)	560
BssT1I	CCWWGG	1 cut(s)	807
Bst2BI	CACGAG	1 cut(s)	560
Bst2UI	CCWGG	1 cut(s)	246
Bst4CI	ACNGT	6 cut(s)	211, 496, 511, 724, 752, 775
Bst6I	CTCTTC	1 cut(s)	374
BstACI	GRCGYC	1 cut(s)	804
BstBI	TTCGAA	1 cut(s)	346
BstC8I	GCNNGC	1 cut(s)	33
BstDEI	CTNAG	4 cut(s)	117, 594, 915, 984
BstENI	CCTNNNNNAGG	1 cut(s)	194
BstF5I	GGATG	1 cut(s)	494
BstH2I	RGCGCY	1 cut(s)	807
BstHHI	GCGC	2 cut(s)	712, 806
BstKTI	GATC	5 cut(s)	161, 178, 466, 733, 867
BstMAI	GTCTC	1 cut(s)	730
BstMBI	GATC	5 cut(s)	158, 175, 463, 730, 864
BstMCI	CGRYCG	1 cut(s)	867
BstMWI	GCNNNNNNNGC	4 cut(s)	92, 265, 956, 1000
BstNI	CCWGG	1 cut(s)	246
BstNSI	RCATGY	1 cut(s)	896
BstSCI	CCNGG	1 cut(s)	244
BstSFI	CTRYAG	1 cut(s)	858
BstV1I	GCAGC	2 cut(s)	872, 934
BstXI	CCANNNNNNTGG	2 cut(s)	62, 814
BsuRI	GGCC	3 cut(s)	54, 132, 717
BtsCI	GGATG	1 cut(s)	494
BtsIMutI	CAGTG	1 cut(s)	207
Cac8I	GCNNGC	1 cut(s)	33
CfoI	GCGC	2 cut(s)	712, 806
Cfr13I	GGNCC	2 cut(s)	715, 970
CviAII	CATG	3 cut(s)	287, 746, 893
DdeI	CTNAG	4 cut(s)	117, 594, 915, 984
DinI	GGCGCC	1 cut(s)	805
DpnI	GATC	5 cut(s)	160, 177, 465, 732, 866
DpnII	GATC	5 cut(s)	158, 175, 463, 730, 864
DrdI	GACNNNNNNGTC	1 cut(s)	750
DseDI	GACNNNNNNGTC	1 cut(s)	750
EaeI	YGGCCR	1 cut(s)	52
Eam1104I	CTCTTC	1 cut(s)	374
EarI	CTCTTC	1 cut(s)	374
Eco130I	CCWWGG	1 cut(s)	807
Eco32I	GATATC	1 cut(s)	1017
Eco47I	GGWCC	1 cut(s)	970
EcoNI	CCTNNNNNAGG	1 cut(s)	194
EcoO109I	RGGNCCY	1 cut(s)	970
EcoRII	CCWGG	1 cut(s)	244
EcoRV	GATATC	1 cut(s)	1017
EcoT14I	CCWWGG	1 cut(s)	807
EcoT22I	ATGCAT	1 cut(s)	261
EgeI	GGCGCC	1 cut(s)	805
EheI	GGCGCC	1 cut(s)	805
ErhI	CCWWGG	1 cut(s)	807
FaeI	CATG	3 cut(s)	290, 749, 896
FaqI	GGGAC	1 cut(s)	98
FatI	CATG	3 cut(s)	286, 745, 892
FauNDI	CATATG	1 cut(s)	352
FbaI	TGATCA	1 cut(s)	175
Fnu4HI	GCNGC	3 cut(s)	651, 861, 948
FokI	GGATG	1 cut(s)	501
Fsp4HI	GCNGC	3 cut(s)	651, 861, 948
FspBI	CTAG	3 cut(s)	81, 102, 477
GlaI	GCGC	2 cut(s)	711, 805
GluI	GCNGC	3 cut(s)	651, 861, 948
GsaI	CCCAGC	1 cut(s)	716
HaeII	RGCGCY	1 cut(s)	807
HaeIII	GGCC	3 cut(s)	54, 132, 717
HhaI	GCGC	2 cut(s)	712, 806
Hin1I	GRCGYC	1 cut(s)	804
Hin1II	CATG	3 cut(s)	290, 749, 896
Hin6I	GCGC	2 cut(s)	710, 804
HinP1I	GCGC	2 cut(s)	710, 804
HincII	GTYRAC	1 cut(s)	793
HindII	GTYRAC	1 cut(s)	793
HindIII	AAGCTT	1 cut(s)	119
HinfI	GANTC	3 cut(s)	295, 328, 473
HpaI	GTTAAC	1 cut(s)	793
HphI	GGTGA	3 cut(s)	611, 913, 920
Hpy166II	GTNNAC	4 cut(s)	337, 559, 793, 921
Hpy188I	TCNGA	4 cut(s)	300, 410, 735, 829
Hpy188III	TCNNGA	2 cut(s)	477, 560
Hpy8I	GTNNAC	4 cut(s)	337, 559, 793, 921
Hpy99I	CGWCG	1 cut(s)	872
HpyAV	CCTTC	4 cut(s)	474, 479, 564, 863
HpyCH4III	ACNGT	6 cut(s)	211, 496, 511, 724, 752, 775
HpyCH4IV	ACGT	1 cut(s)	610
HpyCH4V	TGCA	9 cut(s)	95, 259, 324, 403, 492, 542, 848, 860, 892
HpyF10VI	GCNNNNNNNGC	4 cut(s)	92, 265, 956, 1000
HpyF3I	CTNAG	4 cut(s)	117, 594, 915, 984
HpySE526I	ACGT	1 cut(s)	610
Hsp92I	GRCGYC	1 cut(s)	804
Hsp92II	CATG	3 cut(s)	290, 749, 896
HspAI	GCGC	2 cut(s)	710, 804
KasI	GGCGCC	1 cut(s)	803
Ksp22I	TGATCA	1 cut(s)	175
KspAI	GTTAAC	1 cut(s)	793
Kzo9I	GATC	5 cut(s)	158, 175, 463, 730, 864
Lsp1109I	GCAGC	2 cut(s)	872, 934
LweI	GCATC	4 cut(s)	479, 610, 652, 697
MaeI	CTAG	3 cut(s)	81, 102, 477
MaeII	ACGT	1 cut(s)	610
MaeIII	GTNAC	6 cut(s)	237, 470, 496, 511, 589, 775
MalI	GATC	5 cut(s)	160, 177, 465, 732, 866
MboI	GATC	5 cut(s)	158, 175, 463, 730, 864
MboII	GAAGA	3 cut(s)	391, 663, 1011
MfeI	CAATTG	1 cut(s)	453
MlsI	TGGCCA	1 cut(s)	54
MluNI	TGGCCA	1 cut(s)	54
Mly113I	GGCGCC	1 cut(s)	804
MlyI	GAGTC	1 cut(s)	467
MmeI	TCCRAC	1 cut(s)	795
MnlI	CCTC	6 cut(s)	228, 279, 556, 781, 961, 983
Mox20I	TGGCCA	1 cut(s)	54
Mph1103I	ATGCAT	1 cut(s)	261
MroXI	GAANNNNTTC	1 cut(s)	294
MscI	TGGCCA	1 cut(s)	54
MseI	TTAA	6 cut(s)	192, 312, 414, 629, 783, 792
MslI	CAYNNNNRTG	1 cut(s)	897
Msp20I	TGGCCA	1 cut(s)	54
MspA1I	CMGCKG	1 cut(s)	947
MspR9I	CCNGG	1 cut(s)	246
MunI	CAATTG	1 cut(s)	453
MvaI	CCWGG	1 cut(s)	246
MwoI	GCNNNNNNNGC	4 cut(s)	92, 265, 956, 1000
NarI	GGCGCC	1 cut(s)	804
NdeI	CATATG	1 cut(s)	352
NdeII	GATC	5 cut(s)	158, 175, 463, 730, 864
NlaIII	CATG	3 cut(s)	290, 749, 896
NlaIV	GGNNCC	1 cut(s)	805
NmuCI	GTSAC	3 cut(s)	237, 470, 496
NsiI	ATGCAT	1 cut(s)	261
NspI	RCATGY	1 cut(s)	896
NspV	TTCGAA	1 cut(s)	346
PdmI	GAANNNNTTC	1 cut(s)	294
PfeI	GAWTC	2 cut(s)	295, 328
PflMI	CCANNNNNTGG	1 cut(s)	531
PkrI	GCNGC	3 cut(s)	652, 862, 949
Ple19I	CGATCG	1 cut(s)	867
PleI	GAGTC	1 cut(s)	467
PluTI	GGCGCC	1 cut(s)	807
PpsI	GAGTC	1 cut(s)	467
PpuMI	RGGWCCY	1 cut(s)	970
PshBI	ATTAAT	1 cut(s)	414
Psp5II	RGGWCCY	1 cut(s)	970
Psp6I	CCWGG	1 cut(s)	244
PspFI	CCCAGC	1 cut(s)	712
PspGI	CCWGG	1 cut(s)	244
PspN4I	GGNNCC	1 cut(s)	805
PspPI	GGNCC	2 cut(s)	715, 970
PspPPI	RGGWCCY	1 cut(s)	970
PstI	CTGCAG	1 cut(s)	862
PvuI	CGATCG	1 cut(s)	867
PvuII	CAGCTG	1 cut(s)	947
RseI	CAYNNNNRTG	1 cut(s)	897
SaqAI	TTAA	6 cut(s)	192, 312, 414, 629, 783, 792
SatI	GCNGC	3 cut(s)	651, 861, 948
Sau3AI	GATC	5 cut(s)	158, 175, 463, 730, 864
Sau96I	GGNCC	2 cut(s)	715, 970
SchI	GAGTC	1 cut(s)	467
ScrFI	CCNGG	1 cut(s)	246
SfaNI	GCATC	4 cut(s)	479, 610, 652, 697
SfcI	CTRYAG	1 cut(s)	858
SfoI	GGCGCC	1 cut(s)	805
SfuI	TTCGAA	1 cut(s)	346
SinI	GGWCC	1 cut(s)	970
SmiMI	CAYNNNNRTG	1 cut(s)	897
SsiI	CCGC	2 cut(s)	29, 650
SspDI	GGCGCC	1 cut(s)	803
SspI	AATATT	1 cut(s)	387
SspMI	CTAG	3 cut(s)	81, 102, 477
StyD4I	CCNGG	1 cut(s)	244
StyI	CCWWGG	1 cut(s)	807
TaaI	ACNGT	6 cut(s)	211, 496, 511, 724, 752, 775
TaiI	ACGT	1 cut(s)	613
TaqI	TCGA	1 cut(s)	346
TauI	GCSGC	1 cut(s)	653
TfiI	GAWTC	2 cut(s)	295, 328
Tru1I	TTAA	6 cut(s)	192, 312, 414, 629, 783, 792
Tru9I	TTAA	6 cut(s)	192, 312, 414, 629, 783, 792
TscAI	CASTG	1 cut(s)	214
TseFI	GTSAC	3 cut(s)	237, 470, 496
TseI	GCWGC	2 cut(s)	860, 947
Tsp45I	GTSAC	3 cut(s)	237, 470, 496
TspDTI	ATGAA	3 cut(s)	303, 392, 1011
TspRI	CASTG	1 cut(s)	214
Van91I	CCANNNNNTGG	1 cut(s)	531
VpaK11BI	GGWCC	1 cut(s)	970
VspI	ATTAAT	1 cut(s)	414
XagI	CCTNNNNNAGG	1 cut(s)	194
XapI	RAATTY	4 cut(s)	142, 301, 581, 818
XbaI	TCTAGA	1 cut(s)	476
XceI	RCATGY	1 cut(s)	896
XmnI	GAANNNNTTC	1 cut(s)	294
XspI	CTAG	3 cut(s)	81, 102, 477
Zsp2I	ATGCAT	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.