E3 ubiquitin-protein ligase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G14220 |
| fragaria_vesca | FvH4_4g14860 |
| malus_domestica | MD13G1185900.v1.1 MD16G1186700.v1.1 |
| prunus_persica | Prupe.1G153500_v2.0.a1 |
| pyrus_communis | pycom13g16040 pycom16g15650 |
| rosa_chinensis | RchiOBHm_Chr4g0417351 RchiOBHm_Chr4g0417381 |
| rosa_laevigata | RLG00000007915 |
| rosa_multiflora | Rmu_co8127690.1_g000001 Rmu_sc0004142.1_g000031 |
| rosa_roxburghii | Rroxscaffold_5G00361110 |
| rosa_rugosa | Rorug04G0147200 |
| rosa_samantha | Rh4AG210700 Rh4BG211200 Rh4CG221600 Rh4DG208600 |
| rosa_wichuraiana | Rw4G017800 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 4 cut(s) | 824, 968, 2027, 2171 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 986, 2189 |
| AciI | CCGC | 1 cut(s) | 1322 |
| AclWI | GGATC | 5 cut(s) | 242, 255, 1008, 1445, 1458 |
| AcoI | YGGCCR | 3 cut(s) | 703, 1035, 1906 |
| AcuI | CTGAAG | 3 cut(s) | 777, 1220, 1980 |
| AfaI | GTAC | 6 cut(s) | 92, 279, 450, 1482, 1653, 2206 |
| AfeI | AGCGCT | 2 cut(s) | 293, 1496 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 494, 986, 1697, 2189 |
| AjnI | CCWGG | 5 cut(s) | 589, 964, 1281, 1792, 2167 |
| AluBI | AGCT | 7 cut(s) | 781, 847, 1065, 1359, 1984, 2050, 2234 |
| AluI | AGCT | 7 cut(s) | 781, 847, 1065, 1359, 1984, 2050, 2234 |
| AlwI | GGATC | 5 cut(s) | 242, 255, 1008, 1445, 1458 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 111, 986, 2189 |
| Ama87I | CYCGRG | 5 cut(s) | 116, 761, 828, 1964, 2031 |
| Aor51HI | AGCGCT | 2 cut(s) | 293, 1496 |
| AoxI | GGCC | 5 cut(s) | 484, 703, 1035, 1687, 1906 |
| ApaI | GGGCCC | 2 cut(s) | 488, 1691 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 344, 376, 1547, 1579 |
| AspLEI | GCGC | 4 cut(s) | 294, 942, 1497, 2145 |
| AspS9I | GGNCC | 6 cut(s) | 484, 485, 722, 1687, 1688, 1925 |
| AsuHPI | GGTGA | 8 cut(s) | 568, 579, 594, 608, 1771, 1782, 1797, 1811 |
| AsuNHI | GCTAGC | 2 cut(s) | 254, 1457 |
| AvaI | CYCGRG | 5 cut(s) | 116, 761, 828, 1964, 2031 |
| AvaII | GGWCC | 2 cut(s) | 722, 1925 |
| AxyI | CCTNAGG | 1 cut(s) | 1343 |
| BaeGI | GKGCMC | 4 cut(s) | 488, 973, 1691, 2176 |
| BalI | TGGCCA | 3 cut(s) | 705, 1037, 1908 |
| BamHI | GGATCC | 2 cut(s) | 247, 1450 |
| BanI | GGYRCC | 4 cut(s) | 824, 968, 2027, 2171 |
| BanII | GRGCYC | 4 cut(s) | 442, 488, 1645, 1691 |
| BauI | CACGAG | 2 cut(s) | 513, 1716 |
| BbsI | GAAGAC | 2 cut(s) | 102, 1226 |
| BccI | CCATC | 9 cut(s) | 53, 64, 649, 748, 821, 1280, 1852, 1951, 2024 |
| BceAI | ACGGC | 1 cut(s) | 73 |
| BciT130I | CCWGG | 5 cut(s) | 591, 966, 1283, 1794, 2169 |
| BfaI | CTAG | 9 cut(s) | 255, 269, 432, 944, 1458, 1472, 1635, 2147, 2240 |
| BfmI | CTRYAG | 7 cut(s) | 103, 558, 652, 906, 1047, 1855, 2109 |
| BfoI | RGCGCY | 4 cut(s) | 295, 943, 1498, 2146 |
| Bme1390I | CCNGG | 5 cut(s) | 591, 966, 1283, 1794, 2169 |
| Bme18I | GGWCC | 2 cut(s) | 722, 1925 |
| BmeT110I | CYCGRG | 5 cut(s) | 116, 761, 828, 1964, 2031 |
| BmgT120I | GGNCC | 6 cut(s) | 484, 485, 722, 1687, 1688, 1925 |
| BmiI | GGNNCC | 8 cut(s) | 249, 486, 826, 970, 1452, 1689, 2029, 2173 |
| BmrFI | CCNGG | 5 cut(s) | 591, 966, 1283, 1794, 2169 |
| BmrI | ACTGGG | 2 cut(s) | 491, 1694 |
| BmsI | GCATC | 6 cut(s) | 14, 424, 738, 1134, 1627, 1941 |
| BmtI | GCTAGC | 2 cut(s) | 258, 1461 |
| BmuI | ACTGGG | 2 cut(s) | 491, 1694 |
| BpiI | GAAGAC | 2 cut(s) | 102, 1226 |
| BplI | GAGNNNNNCTC | 8 cut(s) | 278, 310, 800, 832, 1481, 1513, 2003, 2035 |
| BpmI | CTGGAG | 3 cut(s) | 963, 1265, 2166 |
| BpuEI | CTTGAG | 3 cut(s) | 280, 1083, 1483 |
| BsaJI | CCNNGG | 5 cut(s) | 259, 829, 1195, 1462, 2032 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 83, 113 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 494, 986, 1697, 2189 |
| Bse118I | RCCGGY | 1 cut(s) | 152 |
| Bse1I | ACTGG | 5 cut(s) | 486, 980, 1249, 1689, 2183 |
| Bse21I | CCTNAGG | 1 cut(s) | 1343 |
| Bse3DI | GCAATG | 3 cut(s) | 318, 1230, 1521 |
| BseBI | CCWGG | 5 cut(s) | 591, 966, 1283, 1794, 2169 |
| BseDI | CCNNGG | 5 cut(s) | 259, 829, 1195, 1462, 2032 |
| BseGI | GGATG | 3 cut(s) | 56, 1245, 1291 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 494, 986, 1697, 2189 |
| BseMI | GCAATG | 3 cut(s) | 318, 1230, 1521 |
| BseNI | ACTGG | 5 cut(s) | 486, 980, 1249, 1689, 2183 |
| BseRI | GAGGAG | 1 cut(s) | 52 |
| BseSI | GKGCMC | 4 cut(s) | 488, 973, 1691, 2176 |
| BseYI | CCCAGC | 1 cut(s) | 139 |
| BshFI | GGCC | 5 cut(s) | 486, 705, 1037, 1689, 1908 |
| BshNI | GGYRCC | 4 cut(s) | 824, 968, 2027, 2171 |
| BsiHKCI | CYCGRG | 5 cut(s) | 116, 761, 828, 1964, 2031 |
| BsiSI | CCGG | 3 cut(s) | 153, 251, 1454 |
| BsiWI | CGTACG | 1 cut(s) | 90 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 494, 986, 1697, 2189 |
| BsmI | GAATGC | 2 cut(s) | 218, 1421 |
| BsnI | GGCC | 5 cut(s) | 486, 705, 1037, 1689, 1908 |
| BsoBI | CYCGRG | 5 cut(s) | 116, 761, 828, 1964, 2031 |
| Bsp120I | GGGCCC | 2 cut(s) | 484, 1687 |
| Bsp1286I | GDGCHC | 6 cut(s) | 442, 488, 973, 1645, 1691, 2176 |
| Bsp1407I | TGTACA | 2 cut(s) | 277, 1480 |
| Bsp143I | GATC | 4 cut(s) | 247, 1000, 1450, 2316 |
| Bsp19I | CCATGG | 1 cut(s) | 1195 |
| BspACI | CCGC | 1 cut(s) | 1322 |
| BspANI | GGCC | 5 cut(s) | 486, 705, 1037, 1689, 1908 |
| BspLI | GGNNCC | 8 cut(s) | 249, 486, 826, 970, 1452, 1689, 2029, 2173 |
| BspMAI | CTGCAG | 5 cut(s) | 107, 656, 910, 1859, 2113 |
| BspOI | GCTAGC | 2 cut(s) | 258, 1461 |
| BspPI | GGATC | 5 cut(s) | 242, 255, 1008, 1445, 1458 |
| BspT107I | GGYRCC | 4 cut(s) | 824, 968, 2027, 2171 |
| BsrDI | GCAATG | 3 cut(s) | 318, 1230, 1521 |
| BsrFI | RCCGGY | 1 cut(s) | 152 |
| BsrGI | TGTACA | 2 cut(s) | 277, 1480 |
| BsrI | ACTGG | 5 cut(s) | 486, 980, 1249, 1689, 2183 |
| BssAI | RCCGGY | 1 cut(s) | 152 |
| BssECI | CCNNGG | 5 cut(s) | 259, 829, 1195, 1462, 2032 |
| BssMI | GATC | 4 cut(s) | 247, 1000, 1450, 2316 |
| BssSI | CACGAG | 2 cut(s) | 513, 1716 |
| BssT1I | CCWWGG | 3 cut(s) | 259, 1195, 1462 |
| Bst2BI | CACGAG | 2 cut(s) | 513, 1716 |
| Bst2UI | CCWGG | 5 cut(s) | 591, 966, 1283, 1794, 2169 |
| Bst4CI | ACNGT | 2 cut(s) | 182, 1385 |
| Bst6I | CTCTTC | 1 cut(s) | 28 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 111, 914, 1612, 2117 |
| BstAUI | TGTACA | 2 cut(s) | 277, 1480 |
| BstC8I | GCNNGC | 8 cut(s) | 256, 707, 852, 1308, 1334, 1459, 1743, 1910 |
| BstDSI | CCRYGG | 1 cut(s) | 1195 |
| BstEII | GGTNACC | 2 cut(s) | 585, 1788 |
| BstF5I | GGATG | 3 cut(s) | 56, 1245, 1291 |
| BstH2I | RGCGCY | 4 cut(s) | 295, 943, 1498, 2146 |
| BstHHI | GCGC | 4 cut(s) | 294, 942, 1497, 2145 |
| BstKTI | GATC | 4 cut(s) | 250, 1003, 1453, 2319 |
| BstMBI | GATC | 4 cut(s) | 247, 1000, 1450, 2316 |
| BstNI | CCWGG | 5 cut(s) | 591, 966, 1283, 1794, 2169 |
| BstNSI | RCATGY | 1 cut(s) | 1336 |
| BstPI | GGTNACC | 2 cut(s) | 585, 1788 |
| BstSCI | CCNGG | 5 cut(s) | 589, 964, 1281, 1792, 2167 |
| BstSFI | CTRYAG | 7 cut(s) | 103, 558, 652, 906, 1047, 1855, 2109 |
| BstSLI | GKGCMC | 4 cut(s) | 488, 973, 1691, 2176 |
| BstV2I | GAAGAC | 2 cut(s) | 102, 1226 |
| BstX2I | RGATCY | 2 cut(s) | 247, 1450 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 225, 1428 |
| BstYI | RGATCY | 2 cut(s) | 247, 1450 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1343 |
| BsuRI | GGCC | 5 cut(s) | 486, 705, 1037, 1689, 1908 |
| BtgI | CCRYGG | 1 cut(s) | 1195 |
| BtsCI | GGATG | 3 cut(s) | 56, 1245, 1291 |
| BtsI | GCAGTG | 2 cut(s) | 657, 1860 |
| BtsIMutI | CAGTG | 4 cut(s) | 178, 657, 1381, 1860 |
| Cac8I | GCNNGC | 8 cut(s) | 256, 707, 852, 1308, 1334, 1459, 1743, 1910 |
| CaiI | CAGNNNCTG | 3 cut(s) | 111, 986, 2189 |
| CfoI | GCGC | 4 cut(s) | 294, 942, 1497, 2145 |
| Cfr10I | RCCGGY | 1 cut(s) | 152 |
| Cfr13I | GGNCC | 6 cut(s) | 484, 485, 722, 1687, 1688, 1925 |
| CseI | GACGC | 2 cut(s) | 417, 1620 |
| CsiI | ACCWGGT | 2 cut(s) | 964, 2167 |
| Csp6I | GTAC | 6 cut(s) | 91, 278, 449, 1481, 1652, 2205 |
| CviAII | CATG | 7 cut(s) | 164, 368, 1196, 1297, 1333, 1367, 1571 |
| CviQI | GTAC | 6 cut(s) | 91, 278, 449, 1481, 1652, 2205 |
| DpnI | GATC | 4 cut(s) | 249, 1002, 1452, 2318 |
| DpnII | GATC | 4 cut(s) | 247, 1000, 1450, 2316 |
| EaeI | YGGCCR | 3 cut(s) | 703, 1035, 1906 |
| Eam1104I | CTCTTC | 1 cut(s) | 28 |
| EarI | CTCTTC | 1 cut(s) | 28 |
| Eco130I | CCWWGG | 3 cut(s) | 259, 1195, 1462 |
| Eco24I | GRGCYC | 4 cut(s) | 442, 488, 1645, 1691 |
| Eco47I | GGWCC | 2 cut(s) | 722, 1925 |
| Eco47III | AGCGCT | 2 cut(s) | 293, 1496 |
| Eco57I | CTGAAG | 3 cut(s) | 777, 1220, 1980 |
| Eco81I | CCTNAGG | 1 cut(s) | 1343 |
| Eco88I | CYCGRG | 5 cut(s) | 116, 761, 828, 1964, 2031 |
| Eco91I | GGTNACC | 2 cut(s) | 585, 1788 |
| EcoO109I | RGGNCCY | 2 cut(s) | 485, 1688 |
| EcoO65I | GGTNACC | 2 cut(s) | 585, 1788 |
| EcoRII | CCWGG | 5 cut(s) | 589, 964, 1281, 1792, 2167 |
| EcoT14I | CCWWGG | 3 cut(s) | 259, 1195, 1462 |
| EcoT38I | GRGCYC | 4 cut(s) | 442, 488, 1645, 1691 |
| ErhI | CCWWGG | 3 cut(s) | 259, 1195, 1462 |
| FaeI | CATG | 7 cut(s) | 167, 371, 1199, 1300, 1336, 1370, 1574 |
| FatI | CATG | 7 cut(s) | 163, 367, 1195, 1296, 1332, 1366, 1570 |
| FokI | GGATG | 3 cut(s) | 43, 1232, 1298 |
| FriOI | GRGCYC | 4 cut(s) | 442, 488, 1645, 1691 |
| FspBI | CTAG | 9 cut(s) | 255, 269, 432, 944, 1458, 1472, 1635, 2147, 2240 |
| GlaI | GCGC | 4 cut(s) | 293, 941, 1496, 2144 |
| GsaI | CCCAGC | 1 cut(s) | 143 |
| GsuI | CTGGAG | 3 cut(s) | 963, 1265, 2166 |
| HaeII | RGCGCY | 4 cut(s) | 295, 943, 1498, 2146 |
| HaeIII | GGCC | 5 cut(s) | 486, 705, 1037, 1689, 1908 |
| HapII | CCGG | 3 cut(s) | 153, 251, 1454 |
| HgaI | GACGC | 2 cut(s) | 417, 1620 |
| HhaI | GCGC | 4 cut(s) | 294, 942, 1497, 2145 |
| Hin1II | CATG | 7 cut(s) | 167, 371, 1199, 1300, 1336, 1370, 1574 |
| Hin6I | GCGC | 4 cut(s) | 292, 940, 1495, 2143 |
| HinP1I | GCGC | 4 cut(s) | 292, 940, 1495, 2143 |
| HpaII | CCGG | 3 cut(s) | 153, 251, 1454 |
| HphI | GGTGA | 8 cut(s) | 568, 579, 594, 608, 1771, 1782, 1797, 1811 |
| Hpy99I | CGWCG | 1 cut(s) | 86 |
| HpyAV | CCTTC | 8 cut(s) | 27, 238, 450, 498, 832, 1441, 1653, 2035 |
| HpyCH4III | ACNGT | 2 cut(s) | 182, 1385 |
| HpyCH4IV | ACGT | 5 cut(s) | 565, 895, 1125, 1768, 2098 |
| HpySE526I | ACGT | 5 cut(s) | 565, 895, 1125, 1768, 2098 |
| Hsp92II | CATG | 7 cut(s) | 167, 371, 1199, 1300, 1336, 1370, 1574 |
| HspAI | GCGC | 4 cut(s) | 292, 940, 1495, 2143 |
| Kzo9I | GATC | 4 cut(s) | 247, 1000, 1450, 2316 |
| LmnI | GCTCC | 3 cut(s) | 19, 134, 1738 |
| LweI | GCATC | 6 cut(s) | 14, 424, 738, 1134, 1627, 1941 |
| MabI | ACCWGGT | 2 cut(s) | 964, 2167 |
| MaeI | CTAG | 9 cut(s) | 255, 269, 432, 944, 1458, 1472, 1635, 2147, 2240 |
| MaeII | ACGT | 5 cut(s) | 565, 895, 1125, 1768, 2098 |
| MalI | GATC | 4 cut(s) | 249, 1002, 1452, 2318 |
| MboI | GATC | 4 cut(s) | 247, 1000, 1450, 2316 |
| MboII | GAAGA | 8 cut(s) | 15, 18, 107, 306, 1084, 1226, 1509, 2292 |
| MflI | RGATCY | 2 cut(s) | 247, 1450 |
| MhlI | GDGCHC | 6 cut(s) | 442, 488, 973, 1645, 1691, 2176 |
| MlsI | TGGCCA | 3 cut(s) | 705, 1037, 1908 |
| MluNI | TGGCCA | 3 cut(s) | 705, 1037, 1908 |
| MlyI | GAGTC | 8 cut(s) | 46, 92, 380, 773, 818, 1583, 1976, 2021 |
| Mox20I | TGGCCA | 3 cut(s) | 705, 1037, 1908 |
| MscI | TGGCCA | 3 cut(s) | 705, 1037, 1908 |
| MseI | TTAA | 3 cut(s) | 501, 1134, 1704 |
| Msp20I | TGGCCA | 3 cut(s) | 705, 1037, 1908 |
| MspA1I | CMGCKG | 2 cut(s) | 1324, 1359 |
| MspI | CCGG | 3 cut(s) | 153, 251, 1454 |
| MspR9I | CCNGG | 5 cut(s) | 591, 966, 1283, 1794, 2169 |
| Mva1269I | GAATGC | 2 cut(s) | 218, 1421 |
| MvaI | CCWGG | 5 cut(s) | 591, 966, 1283, 1794, 2169 |
| NcoI | CCATGG | 1 cut(s) | 1195 |
| NdeII | GATC | 4 cut(s) | 247, 1000, 1450, 2316 |
| NheI | GCTAGC | 2 cut(s) | 254, 1457 |
| NlaIII | CATG | 7 cut(s) | 167, 371, 1199, 1300, 1336, 1370, 1574 |
| NlaIV | GGNNCC | 8 cut(s) | 249, 486, 826, 970, 1452, 1689, 2029, 2173 |
| NmuCI | GTSAC | 6 cut(s) | 195, 585, 1121, 1167, 1398, 1788 |
| NspI | RCATGY | 1 cut(s) | 1336 |
| PaeI | GCATGC | 1 cut(s) | 1336 |
| PaeR7I | CTCGAG | 1 cut(s) | 116 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 90 |
| PctI | GAATGC | 2 cut(s) | 218, 1421 |
| PfeI | GAWTC | 4 cut(s) | 371, 599, 1574, 1802 |
| Pfl23II | CGTACG | 1 cut(s) | 90 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 986, 2189 |
| PfoI | TCCNGGA | 1 cut(s) | 1281 |
| PleI | GAGTC | 8 cut(s) | 46, 92, 380, 772, 817, 1583, 1975, 2020 |
| PpsI | GAGTC | 8 cut(s) | 46, 92, 380, 772, 817, 1583, 1975, 2020 |
| Psp6I | CCWGG | 5 cut(s) | 589, 964, 1281, 1792, 2167 |
| PspEI | GGTNACC | 2 cut(s) | 585, 1788 |
| PspFI | CCCAGC | 1 cut(s) | 139 |
| PspGI | CCWGG | 5 cut(s) | 589, 964, 1281, 1792, 2167 |
| PspLI | CGTACG | 1 cut(s) | 90 |
| PspN4I | GGNNCC | 8 cut(s) | 249, 486, 826, 970, 1452, 1689, 2029, 2173 |
| PspOMI | GGGCCC | 2 cut(s) | 484, 1687 |
| PspPI | GGNCC | 6 cut(s) | 484, 485, 722, 1687, 1688, 1925 |
| PspXI | VCTCGAGB | 1 cut(s) | 116 |
| PstI | CTGCAG | 5 cut(s) | 107, 656, 910, 1859, 2113 |
| PstNI | CAGNNNCTG | 3 cut(s) | 111, 986, 2189 |
| PsuI | RGATCY | 2 cut(s) | 247, 1450 |
| PvuII | CAGCTG | 1 cut(s) | 1359 |
| RsaI | GTAC | 6 cut(s) | 92, 279, 450, 1482, 1653, 2206 |
| RsaNI | GTAC | 6 cut(s) | 91, 278, 449, 1481, 1652, 2205 |
| SaqAI | TTAA | 3 cut(s) | 501, 1134, 1704 |
| Sau3AI | GATC | 4 cut(s) | 247, 1000, 1450, 2316 |
| Sau96I | GGNCC | 6 cut(s) | 484, 485, 722, 1687, 1688, 1925 |
| SchI | GAGTC | 8 cut(s) | 46, 92, 380, 773, 818, 1583, 1976, 2021 |
| ScrFI | CCNGG | 5 cut(s) | 591, 966, 1283, 1794, 2169 |
| SduI | GDGCHC | 6 cut(s) | 442, 488, 973, 1645, 1691, 2176 |
| SexAI | ACCWGGT | 2 cut(s) | 964, 2167 |
| SfaNI | GCATC | 6 cut(s) | 14, 424, 738, 1134, 1627, 1941 |
| SfcI | CTRYAG | 7 cut(s) | 103, 558, 652, 906, 1047, 1855, 2109 |
| Sfr274I | CTCGAG | 1 cut(s) | 116 |
| SinI | GGWCC | 2 cut(s) | 722, 1925 |
| SlaI | CTCGAG | 1 cut(s) | 116 |
| SmlI | CTYRAG | 4 cut(s) | 116, 295, 1098, 1498 |
| SmoI | CTYRAG | 4 cut(s) | 116, 295, 1098, 1498 |
| SphI | GCATGC | 1 cut(s) | 1336 |
| SsiI | CCGC | 1 cut(s) | 1322 |
| SspMI | CTAG | 9 cut(s) | 255, 269, 432, 944, 1458, 1472, 1635, 2147, 2240 |
| StyD4I | CCNGG | 5 cut(s) | 589, 964, 1281, 1792, 2167 |
| StyI | CCWWGG | 3 cut(s) | 259, 1195, 1462 |
| TaaI | ACNGT | 2 cut(s) | 182, 1385 |
| TaiI | ACGT | 5 cut(s) | 568, 898, 1128, 1771, 2101 |
| TaqI | TCGA | 4 cut(s) | 117, 936, 1070, 2139 |
| TatI | WGTACW | 2 cut(s) | 277, 1480 |
| TauI | GCSGC | 1 cut(s) | 1324 |
| TfiI | GAWTC | 4 cut(s) | 371, 599, 1574, 1802 |
| Tru1I | TTAA | 3 cut(s) | 501, 1134, 1704 |
| Tru9I | TTAA | 3 cut(s) | 501, 1134, 1704 |
| TscAI | CASTG | 4 cut(s) | 185, 664, 1388, 1867 |
| TseFI | GTSAC | 6 cut(s) | 195, 585, 1121, 1167, 1398, 1788 |
| Tsp45I | GTSAC | 6 cut(s) | 195, 585, 1121, 1167, 1398, 1788 |
| TspDTI | ATGAA | 3 cut(s) | 326, 1529, 2307 |
| TspGWI | ACGGA | 1 cut(s) | 2209 |
| TspRI | CASTG | 4 cut(s) | 185, 664, 1388, 1867 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 986, 2189 |
| VpaK11BI | GGWCC | 2 cut(s) | 722, 1925 |
| XbaI | TCTAGA | 2 cut(s) | 268, 1471 |
| XceI | RCATGY | 1 cut(s) | 1336 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 45, 1202 |
| XhoI | CTCGAG | 1 cut(s) | 116 |
| XspI | CTAG | 9 cut(s) | 255, 269, 432, 944, 1458, 1472, 1635, 2147, 2240 |