Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0012488

Physical Location & Seq

Genomic Coordinates Forward (+)

42606190 .. 42606921

Gene Structure 732 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ38747

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGAGCATAGGAGTTCAACGTGAAATGACTGCAGGAATTGCTGGTGTTGCACGAATGTTCGAGCGCCTAGACCTTACCTCAAAGAAACCTGGTGCCCCTACTCCAGTTTCTGGTCGTAGTGGGGGTACTTCAAACTTCTCCGTCAAGGGAAAAGCTGTGCTAGAGAATGTTATTGTTCAGTCGTGTAATAAAAGTAGTGGAAGAATTGCTGATGAAAGTTCAGAAGCACCCTCTCAGATCATCAGGCTGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009553 GO:0009555 GO:0009561 GO:0009987 GO:0010498 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0051603 GO:0051726 GO:0055046 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_2 zf-RING_2 zf-rbx1

Protein Analysis

84

Amino Acids

8.76

Weight (kDa)

9.85

Isoelectric Point (pI)

43.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012488)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14220
fragaria_vesca	FvH4_4g14860
malus_domestica	MD13G1185900.v1.1 MD16G1186700.v1.1
prunus_persica	Prupe.1G153500_v2.0.a1
pyrus_communis	pycom13g16040 pycom16g15650
rosa_chinensis	RchiOBHm_Chr4g0417351 RchiOBHm_Chr4g0417381
rosa_laevigata	RLG00000007915
rosa_multiflora	Rmu_co8127690.1_g000001 Rmu_sc0004142.1_g000031
rosa_roxburghii	Rroxscaffold_5G00361110
rosa_rugosa	Rorug04G0147200
rosa_samantha	Rh4AG210700 Rh4BG211200 Rh4CG221600 Rh4DG208600
rosa_wichuraiana	Rw4G017800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	92
AccB7I	CCANNNNNTGG	1 cut(s)	110
AfaI	GTAC	1 cut(s)	127
AfiI	CCNNNNNNNGG	1 cut(s)	110
AgsI	TTSAA	2 cut(s)	17, 132
AjnI	CCWGG	1 cut(s)	88
AluBI	AGCT	1 cut(s)	155
AluI	AGCT	1 cut(s)	155
AlwNI	CAGNNNCTG	1 cut(s)	110
AspLEI	GCGC	1 cut(s)	66
BaeGI	GKGCMC	1 cut(s)	97
BanI	GGYRCC	1 cut(s)	92
BciT130I	CCWGG	1 cut(s)	90
BfaI	CTAG	2 cut(s)	68, 161
BfmI	CTRYAG	1 cut(s)	30
BfoI	RGCGCY	1 cut(s)	67
Bme1390I	CCNGG	1 cut(s)	90
BmiI	GGNNCC	1 cut(s)	94
BmrFI	CCNGG	1 cut(s)	90
BpmI	CTGGAG	1 cut(s)	87
Bsc4I	CCNNNNNNNGG	1 cut(s)	110
Bse1I	ACTGG	1 cut(s)	104
BseBI	CCWGG	1 cut(s)	90
BseLI	CCNNNNNNNGG	1 cut(s)	110
BseMII	CTCAG	1 cut(s)	248
BseNI	ACTGG	1 cut(s)	104
BseSI	GKGCMC	1 cut(s)	97
BshNI	GGYRCC	1 cut(s)	92
BslI	CCNNNNNNNGG	1 cut(s)	110
Bsp1286I	GDGCHC	1 cut(s)	97
Bsp143I	GATC	1 cut(s)	237
BspCNI	CTCAG	1 cut(s)	247
BspLI	GGNNCC	1 cut(s)	94
BspMAI	CTGCAG	1 cut(s)	34
BspT107I	GGYRCC	1 cut(s)	92
BsrI	ACTGG	1 cut(s)	104
BssMI	GATC	1 cut(s)	237
Bst2UI	CCWGG	1 cut(s)	90
BstAPI	GCANNNNNTGC	1 cut(s)	38
BstDEI	CTNAG	1 cut(s)	234
BstH2I	RGCGCY	1 cut(s)	67
BstHHI	GCGC	1 cut(s)	66
BstKTI	GATC	1 cut(s)	240
BstMBI	GATC	1 cut(s)	237
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 47
BstNI	CCWGG	1 cut(s)	90
BstSCI	CCNGG	1 cut(s)	88
BstSFI	CTRYAG	1 cut(s)	30
BstSLI	GKGCMC	1 cut(s)	97
CaiI	CAGNNNCTG	1 cut(s)	110
CfoI	GCGC	1 cut(s)	66
CsiI	ACCWGGT	1 cut(s)	88
Csp6I	GTAC	1 cut(s)	126
CviJI	RGCY	2 cut(s)	155, 247
CviKI_1	RGCY	2 cut(s)	155, 247
CviQI	GTAC	1 cut(s)	126
DdeI	CTNAG	1 cut(s)	234
DpnI	GATC	1 cut(s)	239
DpnII	GATC	1 cut(s)	237
EcoRII	CCWGG	1 cut(s)	88
FaiI	YATR	1 cut(s)	8
FspBI	CTAG	2 cut(s)	68, 161
GlaI	GCGC	1 cut(s)	65
GsuI	CTGGAG	1 cut(s)	87
HaeII	RGCGCY	1 cut(s)	67
HhaI	GCGC	1 cut(s)	66
Hin6I	GCGC	1 cut(s)	64
HinP1I	GCGC	1 cut(s)	64
Hpy188I	TCNGA	2 cut(s)	223, 237
HpyCH4IV	ACGT	1 cut(s)	19
HpyCH4V	TGCA	2 cut(s)	32, 50
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 47
HpyF3I	CTNAG	1 cut(s)	234
HpySE526I	ACGT	1 cut(s)	19
HspAI	GCGC	1 cut(s)	64
Kzo9I	GATC	1 cut(s)	237
LpnPI	CCDG	7 cut(s)	18, 27, 75, 96, 102, 117, 229
MabI	ACCWGGT	1 cut(s)	88
MaeI	CTAG	2 cut(s)	68, 161
MaeII	ACGT	1 cut(s)	19
MalI	GATC	1 cut(s)	239
MboI	GATC	1 cut(s)	237
MboII	GAAGA	1 cut(s)	213
MhlI	GDGCHC	1 cut(s)	97
MluCI	AATT	2 cut(s)	36, 204
MnlI	CCTC	2 cut(s)	88, 241
MspR9I	CCNGG	1 cut(s)	90
MvaI	CCWGG	1 cut(s)	90
MwoI	GCNNNNNNNGC	2 cut(s)	38, 47
NdeII	GATC	1 cut(s)	237
NlaIV	GGNNCC	1 cut(s)	94
PflMI	CCANNNNNTGG	1 cut(s)	110
Psp6I	CCWGG	1 cut(s)	88
PspGI	CCWGG	1 cut(s)	88
PspN4I	GGNNCC	1 cut(s)	94
PstI	CTGCAG	1 cut(s)	34
PstNI	CAGNNNCTG	1 cut(s)	110
RsaI	GTAC	1 cut(s)	127
RsaNI	GTAC	1 cut(s)	126
Sau3AI	GATC	1 cut(s)	237
ScrFI	CCNGG	1 cut(s)	90
SduI	GDGCHC	1 cut(s)	97
SetI	ASST	5 cut(s)	22, 75, 80, 91, 157
SexAI	ACCWGGT	1 cut(s)	88
SfcI	CTRYAG	1 cut(s)	30
Sse9I	AATT	2 cut(s)	36, 204
SspMI	CTAG	2 cut(s)	68, 161
StyD4I	CCNGG	1 cut(s)	88
TaiI	ACGT	1 cut(s)	22
TaqI	TCGA	1 cut(s)	60
TasI	AATT	2 cut(s)	36, 204
TspDTI	ATGAA	1 cut(s)	228
TspGWI	ACGGA	1 cut(s)	130
Van91I	CCANNNNNTGG	1 cut(s)	110
XspI	CTAG	2 cut(s)	68, 161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.