Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0012488

Physical Location & Seq

Genomic Coordinates Reverse (-)

11813446 .. 11815542

Gene Structure 2097 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g16040.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGCGTCTTTCGCTCCCTCTTCTTCTCTTAACCCAAAACCAGTCTCAGCTCCGCCTTCGTCCTCCCCGGATCTTCTCGACGACTCCAACGAAGACTCCTGCAGCATCTGCCTCGAGCCCTTCAACTGCGACGACCCAGCAACTATAACCAGCTGCAAACATGAATATCATCTTCACTGTATATTAGAATGGTCACAAAGAAGTAAAGAATGCCCAATTTGTTGGCAGTTATTTTCCCTGAAGGATCCTGCTTGCCAAGGGCTTCTAGCTGCTATACAAAATGAGAGGAACTCAAGGTCAAGAAAAACATCTTCCATGGCACCCCAAACTTGTGATTCATCTGAGGACTTTGATGTTGAGCACGAATCTTTCTCAGATGACTCCGATTTGGATGAGCGCATCATGCAGCATCTTGCTGCTGCTTCTAGCAGAGCTCGTTATGCTCGCAGAAGGGAAAGACAGAGATCATCTGGGCTAGGTCCTTCCCATGTTTTTGTTTTTTCCAATCATGAAAATGTGCCTGGTTTCCAGCAAACATACCCAATTTCTCCAGAAGATTCGCCAACTTCTCAAGGGCCATCGGTTATTCAATCTCCACCGTCTTTTATCTGCAGCACTGCTGCCAATAGTGATATCCCGTACAAACCAAGAGTGCTTTATGGCCGGCCATCACCTGATGGTCCACACAGACCAAGCCCGTCCGAGACTGTCAATTTGCCTGATTCTATCAAATCCACGTTGTCTGCTGCCTCAGCCAGACAAAGAGTCAATCTCAAGAAGCACTCGGGGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009553 GO:0009555 GO:0009561 GO:0009987 GO:0010498 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0051603 GO:0051726 GO:0055046 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_2 zf-RING_2 zf-rbx1

Protein Analysis

265

Amino Acids

29.0

Weight (kDa)

5.84

Isoelectric Point (pI)

77.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012488)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14220
fragaria_vesca	FvH4_4g14860
malus_domestica	MD13G1185900.v1.1 MD16G1186700.v1.1
prunus_persica	Prupe.1G153500_v2.0.a1
pyrus_communis	pycom13g16040 pycom16g15650
rosa_chinensis	RchiOBHm_Chr4g0417351 RchiOBHm_Chr4g0417381
rosa_laevigata	RLG00000007915
rosa_multiflora	Rmu_co8127690.1_g000001 Rmu_sc0004142.1_g000031
rosa_roxburghii	Rroxscaffold_5G00361110
rosa_rugosa	Rorug04G0147200
rosa_samantha	Rh4AG210700 Rh4BG211200 Rh4CG221600 Rh4DG208600
rosa_wichuraiana	Rw4G017800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	319
AciI	CCGC	1 cut(s)	53
AclWI	GGATC	3 cut(s)	78, 239, 252
AcoI	YGGCCR	2 cut(s)	661, 665
AcuI	CTGAAG	1 cut(s)	260
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	641
AgsI	TTSAA	2 cut(s)	124, 590
AhdI	GACNNNNNGTC	1 cut(s)	764
AjnI	CCWGG	1 cut(s)	520
AluBI	AGCT	4 cut(s)	50, 153, 269, 434
AluI	AGCT	4 cut(s)	50, 153, 269, 434
Alw21I	GWGCWC	2 cut(s)	363, 436
Alw26I	GTCTC	2 cut(s)	49, 698
AlwI	GGATC	3 cut(s)	78, 239, 252
AlwNI	CAGNNNCTG	1 cut(s)	108
Ama87I	CYCGRG	2 cut(s)	113, 784
AoxI	GGCC	3 cut(s)	575, 661, 665
ApeKI	GCWGC	9 cut(s)	102, 153, 269, 406, 416, 419, 612, 620, 746
ArsI	GACNNNNNNTTYG	2 cut(s)	697, 729
AspLEI	GCGC	1 cut(s)	399
AspS9I	GGNCC	3 cut(s)	479, 575, 680
AsuC2I	CCSGG	1 cut(s)	68
AsuHPI	GGTGA	1 cut(s)	663
AvaI	CYCGRG	2 cut(s)	113, 784
AvaII	GGWCC	2 cut(s)	479, 680
BamHI	GGATCC	1 cut(s)	244
BanI	GGYRCC	1 cut(s)	319
BanII	GRGCYC	2 cut(s)	120, 436
BbsI	GAAGAC	1 cut(s)	99
Bbv12I	GWGCWC	2 cut(s)	363, 436
BbvCI	CCTCAGC	1 cut(s)	751
BbvI	GCAGC	9 cut(s)	114, 140, 256, 403, 406, 418, 607, 624, 733
BccI	CCATC	3 cut(s)	586, 671, 676
BcgI	CGANNNNNNTGC	2 cut(s)	94, 128
BciT130I	CCWGG	1 cut(s)	522
BcnI	CCSGG	1 cut(s)	68
BcoDI	GTCTC	2 cut(s)	49, 698
BfaI	CTAG	3 cut(s)	266, 426, 476
BfmI	CTRYAG	2 cut(s)	100, 610
BisI	GCNGC	9 cut(s)	103, 154, 270, 407, 417, 420, 613, 621, 747
BlsI	GCNGC	9 cut(s)	104, 155, 271, 408, 418, 421, 614, 622, 748
Bme1390I	CCNGG	2 cut(s)	68, 522
Bme18I	GGWCC	2 cut(s)	479, 680
BmeRI	GACNNNNNGTC	1 cut(s)	764
BmeT110I	CYCGRG	2 cut(s)	113, 784
BmgT120I	GGNCC	3 cut(s)	479, 575, 680
BmiI	GGNNCC	2 cut(s)	246, 321
BmrFI	CCNGG	2 cut(s)	68, 522
BmsI	GCATC	3 cut(s)	114, 408, 418
BpiI	GAAGAC	1 cut(s)	99
BplI	GAGNNNNNCTC	4 cut(s)	275, 307, 756, 788
BpmI	CTGGAG	1 cut(s)	534
Bpu10I	CCTNAGC	1 cut(s)	751
BpuEI	CTTGAG	3 cut(s)	277, 555, 758
BpuMI	CCSGG	1 cut(s)	68
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	3 cut(s)	66, 256, 315
BsaXI	ACNNNNNCTCC	2 cut(s)	80, 110
Bse118I	RCCGGY	1 cut(s)	663
Bse1I	ACTGG	1 cut(s)	41
BseBI	CCWGG	1 cut(s)	522
BseDI	CCNNGG	3 cut(s)	66, 256, 315
BseGI	GGATG	1 cut(s)	397
BseMII	CTCAG	4 cut(s)	60, 333, 387, 765
BseNI	ACTGG	1 cut(s)	41
BseXI	GCAGC	9 cut(s)	114, 140, 256, 403, 406, 418, 607, 624, 733
BseYI	CCCAGC	1 cut(s)	136
BshFI	GGCC	3 cut(s)	577, 663, 667
BshNI	GGYRCC	1 cut(s)	319
BsiHKAI	GWGCWC	2 cut(s)	363, 436
BsiHKCI	CYCGRG	2 cut(s)	113, 784
BsiSI	CCGG	2 cut(s)	68, 664
BsmAI	GTCTC	2 cut(s)	49, 698
BsmI	GAATGC	1 cut(s)	215
BsnI	GGCC	3 cut(s)	577, 663, 667
BsoBI	CYCGRG	2 cut(s)	113, 784
Bsp1286I	GDGCHC	3 cut(s)	120, 363, 436
Bsp143I	GATC	3 cut(s)	70, 244, 464
Bsp19I	CCATGG	1 cut(s)	315
BspACI	CCGC	1 cut(s)	53
BspANI	GGCC	3 cut(s)	577, 663, 667
BspCNI	CTCAG	4 cut(s)	59, 334, 386, 764
BspHI	TCATGA	1 cut(s)	508
BspLI	GGNNCC	2 cut(s)	246, 321
BspMAI	CTGCAG	2 cut(s)	104, 614
BspPI	GGATC	3 cut(s)	78, 239, 252
BspT107I	GGYRCC	1 cut(s)	319
BsrFI	RCCGGY	1 cut(s)	663
BsrI	ACTGG	1 cut(s)	41
BssAI	RCCGGY	1 cut(s)	663
BssECI	CCNNGG	3 cut(s)	66, 256, 315
BssMI	GATC	3 cut(s)	70, 244, 464
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	2 cut(s)	256, 315
Bst2UI	CCWGG	1 cut(s)	522
Bst4CI	ACNGT	3 cut(s)	179, 600, 709
Bst6I	CTCTTC	1 cut(s)	25
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	1 cut(s)	108
BstC8I	GCNNGC	3 cut(s)	253, 445, 665
BstDEI	CTNAG	4 cut(s)	46, 342, 373, 751
BstDSI	CCRYGG	1 cut(s)	315
BstF5I	GGATG	1 cut(s)	397
BstHHI	GCGC	1 cut(s)	399
BstKTI	GATC	3 cut(s)	73, 247, 467
BstMAI	GTCTC	2 cut(s)	49, 698
BstMBI	GATC	3 cut(s)	70, 244, 464
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 108, 403, 440, 752, 787
BstNI	CCWGG	1 cut(s)	522
BstSCI	CCNGG	2 cut(s)	66, 520
BstSFI	CTRYAG	2 cut(s)	100, 610
BstV1I	GCAGC	9 cut(s)	114, 140, 256, 403, 406, 418, 607, 624, 733
BstV2I	GAAGAC	1 cut(s)	99
BstX2I	RGATCY	2 cut(s)	70, 244
BstXI	CCANNNNNNTGG	1 cut(s)	222
BstYI	RGATCY	2 cut(s)	70, 244
BsuRI	GGCC	3 cut(s)	577, 663, 667
BtgI	CCRYGG	1 cut(s)	315
BtsCI	GGATG	1 cut(s)	397
BtsI	GCAGTG	1 cut(s)	615
BtsIMutI	CAGTG	2 cut(s)	175, 615
Cac8I	GCNNGC	3 cut(s)	253, 445, 665
CaiI	CAGNNNCTG	1 cut(s)	108
CciI	TCATGA	1 cut(s)	508
CfoI	GCGC	1 cut(s)	399
Cfr10I	RCCGGY	1 cut(s)	663
Cfr13I	GGNCC	3 cut(s)	479, 575, 680
Csp6I	GTAC	1 cut(s)	640
CviAII	CATG	5 cut(s)	161, 316, 403, 488, 509
CviQI	GTAC	1 cut(s)	640
DdeI	CTNAG	4 cut(s)	46, 342, 373, 751
DpnI	GATC	3 cut(s)	72, 246, 466
DpnII	GATC	3 cut(s)	70, 244, 464
DriI	GACNNNNNGTC	1 cut(s)	764
EaeI	YGGCCR	2 cut(s)	661, 665
Eam1104I	CTCTTC	1 cut(s)	25
Eam1105I	GACNNNNNGTC	1 cut(s)	764
EarI	CTCTTC	1 cut(s)	25
EciI	GGCGGA	1 cut(s)	42
Ecl136II	GAGCTC	1 cut(s)	434
Eco130I	CCWWGG	2 cut(s)	256, 315
Eco24I	GRGCYC	2 cut(s)	120, 436
Eco32I	GATATC	1 cut(s)	634
Eco47I	GGWCC	2 cut(s)	479, 680
Eco53kI	GAGCTC	1 cut(s)	434
Eco57I	CTGAAG	1 cut(s)	260
Eco88I	CYCGRG	2 cut(s)	113, 784
EcoICRI	GAGCTC	1 cut(s)	434
EcoO109I	RGGNCCY	1 cut(s)	479
EcoRII	CCWGG	1 cut(s)	520
EcoRV	GATATC	1 cut(s)	634
EcoT14I	CCWWGG	2 cut(s)	256, 315
EcoT38I	GRGCYC	2 cut(s)	120, 436
ErhI	CCWWGG	2 cut(s)	256, 315
FaeI	CATG	5 cut(s)	164, 319, 406, 491, 512
FatI	CATG	5 cut(s)	160, 315, 402, 487, 508
Fnu4HI	GCNGC	9 cut(s)	103, 154, 270, 407, 417, 420, 613, 621, 747
FokI	GGATG	1 cut(s)	404
FriOI	GRGCYC	2 cut(s)	120, 436
FseI	GGCCGGCC	1 cut(s)	667
Fsp4HI	GCNGC	9 cut(s)	103, 154, 270, 407, 417, 420, 613, 621, 747
FspBI	CTAG	3 cut(s)	266, 426, 476
GlaI	GCGC	1 cut(s)	398
GluI	GCNGC	9 cut(s)	103, 154, 270, 407, 417, 420, 613, 621, 747
GsaI	CCCAGC	1 cut(s)	140
GsuI	CTGGAG	1 cut(s)	534
HaeIII	GGCC	3 cut(s)	577, 663, 667
HapII	CCGG	2 cut(s)	68, 664
HhaI	GCGC	1 cut(s)	399
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	5 cut(s)	164, 319, 406, 491, 512
Hin6I	GCGC	1 cut(s)	397
HinP1I	GCGC	1 cut(s)	397
HinfI	GANTC	8 cut(s)	83, 95, 335, 365, 380, 557, 722, 765
HpaII	CCGG	2 cut(s)	68, 664
HphI	GGTGA	1 cut(s)	663
Hpy166II	GTNNAC	1 cut(s)	683
Hpy188I	TCNGA	4 cut(s)	343, 376, 385, 703
Hpy188III	TCNNGA	5 cut(s)	77, 300, 509, 551, 775
Hpy8I	GTNNAC	1 cut(s)	683
Hpy99I	CGWCG	2 cut(s)	83, 134
HpyAV	CCTTC	5 cut(s)	66, 130, 235, 444, 492
HpyCH4III	ACNGT	3 cut(s)	179, 600, 709
HpyCH4IV	ACGT	1 cut(s)	737
HpyCH4V	TGCA	4 cut(s)	102, 156, 406, 612
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 108, 403, 440, 752, 787
HpyF3I	CTNAG	4 cut(s)	46, 342, 373, 751
HpySE526I	ACGT	1 cut(s)	737
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	5 cut(s)	164, 319, 406, 491, 512
HspAI	GCGC	1 cut(s)	397
KroI	GCCGGC	1 cut(s)	663
KroNI	GCCGGC	1 cut(s)	665
Kzo9I	GATC	3 cut(s)	70, 244, 464
LmnI	GCTCC	2 cut(s)	19, 55
Lsp1109I	GCAGC	9 cut(s)	114, 140, 256, 403, 406, 418, 607, 624, 733
LweI	GCATC	3 cut(s)	114, 408, 418
MaeI	CTAG	3 cut(s)	266, 426, 476
MaeII	ACGT	1 cut(s)	737
MaeIII	GTNAC	1 cut(s)	192
MalI	GATC	3 cut(s)	72, 246, 466
MboI	GATC	3 cut(s)	70, 244, 464
MboII	GAAGA	7 cut(s)	12, 15, 65, 104, 164, 303, 566
MflI	RGATCY	2 cut(s)	70, 244
MhlI	GDGCHC	3 cut(s)	120, 363, 436
MluCI	AATT	3 cut(s)	216, 543, 712
MlyI	GAGTC	4 cut(s)	77, 89, 374, 774
MmeI	TCCRAC	1 cut(s)	111
MnlI	CCTC	6 cut(s)	28, 73, 122, 279, 337, 760
MroNI	GCCGGC	1 cut(s)	663
MseI	TTAA	2 cut(s)	30, 793
MslI	CAYNNNNRTG	1 cut(s)	513
MspA1I	CMGCKG	1 cut(s)	153
MspI	CCGG	2 cut(s)	68, 664
MspR9I	CCNGG	2 cut(s)	68, 522
Mva1269I	GAATGC	1 cut(s)	215
MvaI	CCWGG	1 cut(s)	522
MwoI	GCNNNNNNNGC	6 cut(s)	11, 108, 403, 440, 752, 787
NaeI	GCCGGC	1 cut(s)	665
NciI	CCSGG	1 cut(s)	68
NcoI	CCATGG	1 cut(s)	315
NdeII	GATC	3 cut(s)	70, 244, 464
NgoMIV	GCCGGC	1 cut(s)	663
NlaIII	CATG	5 cut(s)	164, 319, 406, 491, 512
NlaIV	GGNNCC	2 cut(s)	246, 321
NmuCI	GTSAC	1 cut(s)	192
PaeR7I	CTCGAG	1 cut(s)	113
PagI	TCATGA	1 cut(s)	508
PcsI	WCGNNNNNNNCGW	1 cut(s)	87
PctI	GAATGC	1 cut(s)	215
PdiI	GCCGGC	1 cut(s)	665
PfeI	GAWTC	4 cut(s)	335, 365, 557, 722
PkrI	GCNGC	9 cut(s)	104, 155, 271, 408, 418, 421, 614, 622, 748
PleI	GAGTC	4 cut(s)	77, 89, 374, 773
PpsI	GAGTC	4 cut(s)	77, 89, 374, 773
PpuMI	RGGWCCY	1 cut(s)	479
Psp124BI	GAGCTC	1 cut(s)	436
Psp5II	RGGWCCY	1 cut(s)	479
Psp6I	CCWGG	1 cut(s)	520
PspFI	CCCAGC	1 cut(s)	136
PspGI	CCWGG	1 cut(s)	520
PspN4I	GGNNCC	2 cut(s)	246, 321
PspPI	GGNCC	3 cut(s)	479, 575, 680
PspPPI	RGGWCCY	1 cut(s)	479
PspXI	VCTCGAGB	1 cut(s)	113
PstI	CTGCAG	2 cut(s)	104, 614
PstNI	CAGNNNCTG	1 cut(s)	108
PsuI	RGATCY	2 cut(s)	70, 244
PvuII	CAGCTG	1 cut(s)	153
RigI	GGCCGGCC	1 cut(s)	667
RsaI	GTAC	1 cut(s)	641
RsaNI	GTAC	1 cut(s)	640
RseI	CAYNNNNRTG	1 cut(s)	513
SacI	GAGCTC	1 cut(s)	436
SaqAI	TTAA	2 cut(s)	30, 793
SatI	GCNGC	9 cut(s)	103, 154, 270, 407, 417, 420, 613, 621, 747
Sau3AI	GATC	3 cut(s)	70, 244, 464
Sau96I	GGNCC	3 cut(s)	479, 575, 680
SchI	GAGTC	4 cut(s)	77, 89, 374, 774
ScrFI	CCNGG	2 cut(s)	68, 522
SduI	GDGCHC	3 cut(s)	120, 363, 436
SetI	ASST	8 cut(s)	52, 155, 271, 299, 436, 481, 676, 740
SfaNI	GCATC	3 cut(s)	114, 408, 418
SfcI	CTRYAG	2 cut(s)	100, 610
Sfr274I	CTCGAG	1 cut(s)	113
SinI	GGWCC	2 cut(s)	479, 680
SlaI	CTCGAG	1 cut(s)	113
SmiMI	CAYNNNNRTG	1 cut(s)	513
SmlI	CTYRAG	4 cut(s)	113, 292, 570, 773
SmoI	CTYRAG	4 cut(s)	113, 292, 570, 773
Sse9I	AATT	3 cut(s)	216, 543, 712
SsiI	CCGC	1 cut(s)	53
SspMI	CTAG	3 cut(s)	266, 426, 476
SstI	GAGCTC	1 cut(s)	436
StyD4I	CCNGG	2 cut(s)	66, 520
StyI	CCWWGG	2 cut(s)	256, 315
TaaI	ACNGT	3 cut(s)	179, 600, 709
TaiI	ACGT	1 cut(s)	740
TaqI	TCGA	2 cut(s)	78, 114
TasI	AATT	3 cut(s)	216, 543, 712
TfiI	GAWTC	4 cut(s)	335, 365, 557, 722
Tru1I	TTAA	2 cut(s)	30, 793
Tru9I	TTAA	2 cut(s)	30, 793
TscAI	CASTG	2 cut(s)	182, 622
TseFI	GTSAC	1 cut(s)	192
TseI	GCWGC	9 cut(s)	102, 153, 269, 406, 416, 419, 612, 620, 746
Tsp45I	GTSAC	1 cut(s)	192
TspDTI	ATGAA	3 cut(s)	177, 327, 525
TspRI	CASTG	2 cut(s)	182, 622
VpaK11BI	GGWCC	2 cut(s)	479, 680
XhoI	CTCGAG	1 cut(s)	113
XspI	CTAG	3 cut(s)	266, 426, 476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.