Rroxscaffold_5G00361110

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Forward (+)
41723484 .. 41726742
3259 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00361110.1

Sequence Viewer

Length: 1323 bp
ATGGCATCTTTCGCTCCTTCCTCTTCTTCTTCTTCTTCTGATAACCCAATACCCATCTGGACTCCATCCTCCTCTGTATCTGCTTTTCCCGACGAGCCGTATGAAGACTCCTGCAGCATCTGCCTCGAGCCTTTCTGCTCCGATGACCCAGCCACTGTAAGATCACTGCACAGTTTGTTTCTTTTGGTTGAATTTGGTGTTTTTGGCACTACCCAAGTGACAGTATCACTGGGTCTGTTTCGAAATGCTGTTCGTAAAGAGTCACAAAGAAGTAAAGAATGCCCAATTTGTTGGCAGTTACTTGTCTTGAAGGATCCGGCTAGCCAAGGGCTTCTAGATGTTGATTCGTTCTCAGATGACTCCGATTTGGACGAGCGTATTATGCAGCATCTTGCTGCTGCGTCTAGCAGGGCTCGTTATGTACGCAGAAGGGAAAGACAGAGATATTCTGGACTGGGCCCTTCCAATGGTTTTAATTTTTCCCCTCGTGAAAATGTTTCTGGTATGGAGCAAGCACACCCAACTTCTCCTGTAGAACGTCCAAGTTTCACCTATGGGTCACCAGGAGGTGATTCACCAACTTCTCCAAGACCACCTGTTGTTCAACCTCCACCATCTTTTATCTGCAGCACTGCTGCCAACAATGATGTTCCTTTCAAACCAAGAGTTCTCTTTGGCCAGCCAACACCTAATGGACCACAAAGACAAAGCCCATCTGAGATGCTCAATTTTCCCGAGTCAATCAAATCAAAGCTATACAAAGAGTCGATCTCCAAAGGCACCCGAGGGTTGAAGGAAAAGCTGCTTGCTCGTAACAACTCAGTCAAGGAGATGAGCAAAGGAGTTCAACGTGAGATGACTGCAGGAATTGCTGGTGTTGCACGAATGTTCGAGCGCCTAGACCTTACCTCAAAGAAACCTGGTGCCCCTACTCCAGTTTCTGGTCGTAGTGGGGGAACTTCAAACTTCTCCGTCAAGGGAAAAGCTGTGCTAGAGAATGGTTTTGATTTAGCTCATCGAAGAATAATTGTTTGTGTTTTACTTCTCAAGCACAAGGCATATCAGCAAGTGACGTTATGGTTAAAGCCAAGCTGTTGGGCTGCAAGTTTTCCATGGAAGTTTTGGAACTTCTCCATTTGCAATGAGGGGTCTTTAGTTTCTCAACCAGCTCTCTCAGCATTTGTGAAGCCCCACCAGGATGAACTTTGCATGGCGTTGCAAGCACTTGAAAAGCCGCTGCTTCGCATGCTAATCCTCGTCATTACTCTCGTTGATGACAAAATTTATCTAAATCAAAACATTTTAGTAGCACATGACAGATGA

Protein Analysis

440

Amino Acids

48.48

Weight (kDa)

8.93

Isoelectric Point (pI)

50.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0012488)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 779, 923
AccB7I CCANNNNNTGG 1 cut(s) 941
AciI CCGC 1 cut(s) 1235
AclWI GGATC 2 cut(s) 308, 321
AcoI YGGCCR 1 cut(s) 676
AcsI RAATTY 2 cut(s) 191, 1281
AfaI GTAC 1 cut(s) 423
AfiI CCNNNNNNNGG 2 cut(s) 467, 941
AgsI TTSAA 8 cut(s) 191, 310, 605, 658, 793, 848, 963, 1229
AjnI CCWGG 3 cut(s) 562, 919, 1194
AluBI AGCT 6 cut(s) 754, 802, 986, 1013, 1092, 1169
AluI AGCT 6 cut(s) 754, 802, 986, 1013, 1092, 1169
AlwI GGATC 2 cut(s) 308, 321
AlwNI CAGNNNCTG 3 cut(s) 120, 155, 941
Ama87I CYCGRG 3 cut(s) 125, 734, 783
AoxI GGCC 2 cut(s) 457, 676
ApaI GGGCCC 1 cut(s) 461
ApeKI GCWGC 9 cut(s) 114, 385, 395, 398, 627, 635, 802, 1100, 1237
ApoI RAATTY 2 cut(s) 191, 1281
AspLEI GCGC 1 cut(s) 897
AspS9I GGNCC 3 cut(s) 457, 458, 695
AsuHPI GGTGA 4 cut(s) 541, 552, 567, 581
AsuII TTCGAA 1 cut(s) 241
AsuNHI GCTAGC 1 cut(s) 320
AvaI CYCGRG 3 cut(s) 125, 734, 783
AvaII GGWCC 1 cut(s) 695
BaeGI GKGCMC 2 cut(s) 461, 928
BalI TGGCCA 1 cut(s) 678
BamHI GGATCC 1 cut(s) 313
BanI GGYRCC 2 cut(s) 779, 923
BanII GRGCYC 2 cut(s) 415, 461
BauI CACGAG 1 cut(s) 486
BbsI GAAGAC 1 cut(s) 111
BbvI GCAGC 9 cut(s) 126, 382, 385, 397, 622, 639, 789, 1087, 1224
BccI CCATC 4 cut(s) 62, 73, 622, 721
BceAI ACGGC 1 cut(s) 82
BcgI CGANNNNNNTGC 2 cut(s) 106, 140
BciT130I CCWGG 3 cut(s) 564, 921, 1196
BfaI CTAG 5 cut(s) 321, 335, 405, 899, 992
BfmI CTRYAG 4 cut(s) 112, 531, 625, 861
BfoI RGCGCY 1 cut(s) 898
Bme1390I CCNGG 3 cut(s) 564, 921, 1196
Bme18I GGWCC 1 cut(s) 695
BmeT110I CYCGRG 3 cut(s) 125, 734, 783
BmgT120I GGNCC 3 cut(s) 457, 458, 695
BmiI GGNNCC 4 cut(s) 315, 459, 781, 925
BmrFI CCNGG 3 cut(s) 564, 921, 1196
BmrI ACTGGG 2 cut(s) 239, 464
BmsI GCATC 4 cut(s) 14, 126, 397, 711
BmtI GCTAGC 1 cut(s) 324
BmuI ACTGGG 2 cut(s) 239, 464
BpiI GAAGAC 1 cut(s) 111
BplI GAGNNNNNCTC 2 cut(s) 755, 787
BpmI CTGGAG 1 cut(s) 918
Bpu14I TTCGAA 1 cut(s) 241
BpuEI CTTGAG 1 cut(s) 1031
BsaJI CCNNGG 3 cut(s) 325, 784, 1112
Bsc4I CCNNNNNNNGG 2 cut(s) 467, 941
Bse1I ACTGG 3 cut(s) 234, 459, 935
Bse3DI GCAATG 1 cut(s) 1147
BseBI CCWGG 3 cut(s) 564, 921, 1196
BseDI CCNNGG 3 cut(s) 325, 784, 1112
BseGI GGATG 2 cut(s) 65, 1204
BseLI CCNNNNNNNGG 2 cut(s) 467, 941
BseMI GCAATG 1 cut(s) 1147
BseMII CTCAG 4 cut(s) 366, 708, 834, 1188
BseNI ACTGG 3 cut(s) 234, 459, 935
BseRI GAGGAG 1 cut(s) 61
BseSI GKGCMC 2 cut(s) 461, 928
BseXI GCAGC 9 cut(s) 126, 382, 385, 397, 622, 639, 789, 1087, 1224
BseYI CCCAGC 1 cut(s) 148
BsgI GTGCAG 1 cut(s) 152
BshFI GGCC 2 cut(s) 459, 678
BshNI GGYRCC 2 cut(s) 779, 923
BsiHKCI CYCGRG 3 cut(s) 125, 734, 783
BsiSI CCGG 1 cut(s) 317
BslI CCNNNNNNNGG 2 cut(s) 467, 941
BsmI GAATGC 1 cut(s) 284
BsnI GGCC 2 cut(s) 459, 678
BsoBI CYCGRG 3 cut(s) 125, 734, 783
Bsp119I TTCGAA 1 cut(s) 241
Bsp120I GGGCCC 1 cut(s) 457
Bsp1286I GDGCHC 3 cut(s) 415, 461, 928
Bsp143I GATC 3 cut(s) 161, 313, 768
Bsp19I CCATGG 1 cut(s) 1112
BspACI CCGC 1 cut(s) 1235
BspANI GGCC 2 cut(s) 459, 678
BspCNI CTCAG 4 cut(s) 365, 709, 833, 1187
BspLI GGNNCC 4 cut(s) 315, 459, 781, 925
BspMAI CTGCAG 3 cut(s) 116, 629, 865
BspOI GCTAGC 1 cut(s) 324
BspPI GGATC 2 cut(s) 308, 321
BspT104I TTCGAA 1 cut(s) 241
BspT107I GGYRCC 2 cut(s) 779, 923
BsrDI GCAATG 1 cut(s) 1147
BsrI ACTGG 3 cut(s) 234, 459, 935
BssECI CCNNGG 3 cut(s) 325, 784, 1112
BssMI GATC 3 cut(s) 161, 313, 768
BssSI CACGAG 1 cut(s) 486
BssT1I CCWWGG 2 cut(s) 325, 1112
Bst2BI CACGAG 1 cut(s) 486
Bst2UI CCWGG 3 cut(s) 564, 921, 1196
Bst4CI ACNGT 3 cut(s) 157, 173, 223
Bst6I CTCTTC 1 cut(s) 28
BstAPI GCANNNNNTGC 2 cut(s) 120, 869
BstBI TTCGAA 1 cut(s) 241
BstC8I GCNNGC 6 cut(s) 322, 513, 680, 807, 1221, 1247
BstDEI CTNAG 4 cut(s) 352, 717, 820, 1174
BstDSI CCRYGG 1 cut(s) 1112
BstEII GGTNACC 1 cut(s) 558
BstF5I GGATG 2 cut(s) 65, 1204
BstH2I RGCGCY 1 cut(s) 898
BstHHI GCGC 1 cut(s) 897
BstKTI GATC 3 cut(s) 164, 316, 771
BstMBI GATC 3 cut(s) 161, 313, 768
BstMWI GCNNNNNNNGC 8 cut(s) 11, 120, 382, 869, 878, 1175, 1220, 1246
BstNI CCWGG 3 cut(s) 564, 921, 1196
BstNSI RCATGY 1 cut(s) 1249
BstPI GGTNACC 1 cut(s) 558
BstSCI CCNGG 3 cut(s) 562, 919, 1194
BstSFI CTRYAG 4 cut(s) 112, 531, 625, 861
BstSLI GKGCMC 2 cut(s) 461, 928
BstV1I GCAGC 9 cut(s) 126, 382, 385, 397, 622, 639, 789, 1087, 1224
BstV2I GAAGAC 1 cut(s) 111
BstX2I RGATCY 1 cut(s) 313
BstXI CCANNNNNNTGG 2 cut(s) 291, 1095
BstYI RGATCY 1 cut(s) 313
BsuRI GGCC 2 cut(s) 459, 678
BtgI CCRYGG 1 cut(s) 1112
BtsCI GGATG 2 cut(s) 65, 1204
BtsI GCAGTG 2 cut(s) 164, 630
BtsIMutI CAGTG 4 cut(s) 153, 164, 227, 630
Cac8I GCNNGC 6 cut(s) 322, 513, 680, 807, 1221, 1247
CaiI CAGNNNCTG 3 cut(s) 120, 155, 941
CfoI GCGC 1 cut(s) 897
Cfr13I GGNCC 3 cut(s) 457, 458, 695
CseI GACGC 1 cut(s) 390
CsiI ACCWGGT 1 cut(s) 919
Csp6I GTAC 1 cut(s) 422
CviAII CATG 4 cut(s) 1113, 1210, 1246, 1313
CviQI GTAC 1 cut(s) 422
DdeI CTNAG 4 cut(s) 352, 717, 820, 1174
DpnI GATC 3 cut(s) 163, 315, 770
DpnII GATC 3 cut(s) 161, 313, 768
EaeI YGGCCR 1 cut(s) 676
Eam1104I CTCTTC 1 cut(s) 28
EarI CTCTTC 1 cut(s) 28
Eco130I CCWWGG 2 cut(s) 325, 1112
Eco24I GRGCYC 2 cut(s) 415, 461
Eco47I GGWCC 1 cut(s) 695
Eco88I CYCGRG 3 cut(s) 125, 734, 783
Eco91I GGTNACC 1 cut(s) 558
EcoO109I RGGNCCY 1 cut(s) 458
EcoO65I GGTNACC 1 cut(s) 558
EcoRII CCWGG 3 cut(s) 562, 919, 1194
EcoT14I CCWWGG 2 cut(s) 325, 1112
EcoT38I GRGCYC 2 cut(s) 415, 461
ErhI CCWWGG 2 cut(s) 325, 1112
FaeI CATG 4 cut(s) 1116, 1213, 1249, 1316
FatI CATG 4 cut(s) 1112, 1209, 1245, 1312
FokI GGATG 2 cut(s) 52, 1211
FriOI GRGCYC 2 cut(s) 415, 461
FspBI CTAG 5 cut(s) 321, 335, 405, 899, 992
GlaI GCGC 1 cut(s) 896
GsaI CCCAGC 1 cut(s) 152
GsuI CTGGAG 1 cut(s) 918
HaeII RGCGCY 1 cut(s) 898
HaeIII GGCC 2 cut(s) 459, 678
HapII CCGG 1 cut(s) 317
HgaI GACGC 1 cut(s) 390
HhaI GCGC 1 cut(s) 897
Hin1II CATG 4 cut(s) 1116, 1213, 1249, 1316
Hin6I GCGC 1 cut(s) 895
HinP1I GCGC 1 cut(s) 895
HinfI GANTC 8 cut(s) 61, 107, 260, 344, 359, 572, 737, 764
HpaII CCGG 1 cut(s) 317
HphI GGTGA 4 cut(s) 541, 552, 567, 581
Hpy188I TCNGA 5 cut(s) 40, 142, 355, 364, 718
Hpy188III TCNNGA 7 cut(s) 58, 89, 307, 335, 450, 488, 734
Hpy99I CGWCG 1 cut(s) 95
HpyAV CCTTC 5 cut(s) 27, 304, 423, 471, 787
HpyCH4III ACNGT 3 cut(s) 157, 173, 223
HpyCH4IV ACGT 3 cut(s) 538, 850, 1073
HpyF10VI GCNNNNNNNGC 8 cut(s) 11, 120, 382, 869, 878, 1175, 1220, 1246
HpyF3I CTNAG 4 cut(s) 352, 717, 820, 1174
HpySE526I ACGT 3 cut(s) 538, 850, 1073
Hsp92II CATG 4 cut(s) 1116, 1213, 1249, 1316
HspAI GCGC 1 cut(s) 895
Kzo9I GATC 3 cut(s) 161, 313, 768
LmnI GCTCC 3 cut(s) 19, 143, 508
Lsp1109I GCAGC 9 cut(s) 126, 382, 385, 397, 622, 639, 789, 1087, 1224
LweI GCATC 4 cut(s) 14, 126, 397, 711
MabI ACCWGGT 1 cut(s) 919
MaeI CTAG 5 cut(s) 321, 335, 405, 899, 992
MaeII ACGT 3 cut(s) 538, 850, 1073
MaeIII GTNAC 6 cut(s) 217, 261, 297, 558, 812, 1069
MalI GATC 3 cut(s) 163, 315, 770
MboI GATC 3 cut(s) 161, 313, 768
MboII GAAGA 7 cut(s) 15, 18, 21, 24, 27, 116, 1032
MflI RGATCY 1 cut(s) 313
MhlI GDGCHC 3 cut(s) 415, 461, 928
MlsI TGGCCA 1 cut(s) 678
MluCI AATT 7 cut(s) 191, 285, 475, 727, 867, 1026, 1281
MluNI TGGCCA 1 cut(s) 678
MlyI GAGTC 6 cut(s) 55, 101, 269, 353, 746, 773
Mox20I TGGCCA 1 cut(s) 678
MscI TGGCCA 1 cut(s) 678
MseI TTAA 2 cut(s) 474, 1082
MslI CAYNNNNRTG 1 cut(s) 1197
Msp20I TGGCCA 1 cut(s) 678
MspA1I CMGCKG 1 cut(s) 1237
MspI CCGG 1 cut(s) 317
MspR9I CCNGG 3 cut(s) 564, 921, 1196
Mva1269I GAATGC 1 cut(s) 284
MvaI CCWGG 3 cut(s) 564, 921, 1196
MwoI GCNNNNNNNGC 8 cut(s) 11, 120, 382, 869, 878, 1175, 1220, 1246
NcoI CCATGG 1 cut(s) 1112
NdeII GATC 3 cut(s) 161, 313, 768
NheI GCTAGC 1 cut(s) 320
NlaIII CATG 4 cut(s) 1116, 1213, 1249, 1316
NlaIV GGNNCC 4 cut(s) 315, 459, 781, 925
NmuCI GTSAC 4 cut(s) 217, 261, 558, 1069
NspI RCATGY 1 cut(s) 1249
NspV TTCGAA 1 cut(s) 241
PaeI GCATGC 1 cut(s) 1249
PaeR7I CTCGAG 1 cut(s) 125
PctI GAATGC 1 cut(s) 284
PfeI GAWTC 2 cut(s) 344, 572
PflMI CCANNNNNTGG 1 cut(s) 941
PleI GAGTC 6 cut(s) 55, 101, 268, 353, 745, 772
PpsI GAGTC 6 cut(s) 55, 101, 268, 353, 745, 772
Psp6I CCWGG 3 cut(s) 562, 919, 1194
PspEI GGTNACC 1 cut(s) 558
PspFI CCCAGC 1 cut(s) 148
PspGI CCWGG 3 cut(s) 562, 919, 1194
PspN4I GGNNCC 4 cut(s) 315, 459, 781, 925
PspOMI GGGCCC 1 cut(s) 457
PspPI GGNCC 3 cut(s) 457, 458, 695
PspXI VCTCGAGB 1 cut(s) 125
PstI CTGCAG 3 cut(s) 116, 629, 865
PstNI CAGNNNCTG 3 cut(s) 120, 155, 941
PsuI RGATCY 1 cut(s) 313
RsaI GTAC 1 cut(s) 423
RsaNI GTAC 1 cut(s) 422
RseI CAYNNNNRTG 1 cut(s) 1197
SaqAI TTAA 2 cut(s) 474, 1082
Sau3AI GATC 3 cut(s) 161, 313, 768
Sau96I GGNCC 3 cut(s) 457, 458, 695
SchI GAGTC 6 cut(s) 55, 101, 269, 353, 746, 773
ScrFI CCNGG 3 cut(s) 564, 921, 1196
SduI GDGCHC 3 cut(s) 415, 461, 928
SexAI ACCWGGT 1 cut(s) 919
SfaNI GCATC 4 cut(s) 14, 126, 397, 711
SfcI CTRYAG 4 cut(s) 112, 531, 625, 861
Sfr274I CTCGAG 1 cut(s) 125
SfuI TTCGAA 1 cut(s) 241
SinI GGWCC 1 cut(s) 695
SlaI CTCGAG 1 cut(s) 125
SmiMI CAYNNNNRTG 1 cut(s) 1197
SmlI CTYRAG 2 cut(s) 125, 1046
SmoI CTYRAG 2 cut(s) 125, 1046
SphI GCATGC 1 cut(s) 1249
Sse9I AATT 7 cut(s) 191, 285, 475, 727, 867, 1026, 1281
SsiI CCGC 1 cut(s) 1235
SspMI CTAG 5 cut(s) 321, 335, 405, 899, 992
StyD4I CCNGG 3 cut(s) 562, 919, 1194
StyI CCWWGG 2 cut(s) 325, 1112
TaaI ACNGT 3 cut(s) 157, 173, 223
TaiI ACGT 3 cut(s) 541, 853, 1076
TaqI TCGA 5 cut(s) 126, 241, 767, 891, 1018
TasI AATT 7 cut(s) 191, 285, 475, 727, 867, 1026, 1281
TauI GCSGC 1 cut(s) 1237
TfiI GAWTC 2 cut(s) 344, 572
Tru1I TTAA 2 cut(s) 474, 1082
Tru9I TTAA 2 cut(s) 474, 1082
TscAI CASTG 4 cut(s) 160, 171, 234, 637
TseFI GTSAC 4 cut(s) 217, 261, 558, 1069
TseI GCWGC 9 cut(s) 114, 385, 395, 398, 627, 635, 802, 1100, 1237
Tsp45I GTSAC 4 cut(s) 217, 261, 558, 1069
TspDTI ATGAA 2 cut(s) 117, 1215
TspGWI ACGGA 1 cut(s) 961
TspRI CASTG 4 cut(s) 160, 171, 234, 637
Van91I CCANNNNNTGG 1 cut(s) 941
VpaK11BI GGWCC 1 cut(s) 695
XapI RAATTY 2 cut(s) 191, 1281
XbaI TCTAGA 1 cut(s) 334
XceI RCATGY 1 cut(s) 1249
XcmI CCANNNNNNNNNTGG 2 cut(s) 54, 1119
XhoI CTCGAG 1 cut(s) 125
XspI CTAG 5 cut(s) 321, 335, 405, 899, 992
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.