E3 ubiquitin-protein ligase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G14220 |
| fragaria_vesca | FvH4_4g14860 |
| malus_domestica | MD13G1185900.v1.1 MD16G1186700.v1.1 |
| prunus_persica | Prupe.1G153500_v2.0.a1 |
| pyrus_communis | pycom13g16040 pycom16g15650 |
| rosa_chinensis | RchiOBHm_Chr4g0417351 RchiOBHm_Chr4g0417381 |
| rosa_laevigata | RLG00000007915 |
| rosa_multiflora | Rmu_co8127690.1_g000001 Rmu_sc0004142.1_g000031 |
| rosa_roxburghii | Rroxscaffold_5G00361110 |
| rosa_rugosa | Rorug04G0147200 |
| rosa_samantha | Rh4AG210700 Rh4BG211200 Rh4CG221600 Rh4DG208600 |
| rosa_wichuraiana | Rw4G017800 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 779, 923 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 941 |
| AciI | CCGC | 1 cut(s) | 1235 |
| AclWI | GGATC | 2 cut(s) | 308, 321 |
| AcoI | YGGCCR | 1 cut(s) | 676 |
| AcsI | RAATTY | 2 cut(s) | 191, 1281 |
| AfaI | GTAC | 1 cut(s) | 423 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 467, 941 |
| AgsI | TTSAA | 8 cut(s) | 191, 310, 605, 658, 793, 848, 963, 1229 |
| AjnI | CCWGG | 3 cut(s) | 562, 919, 1194 |
| AluBI | AGCT | 6 cut(s) | 754, 802, 986, 1013, 1092, 1169 |
| AluI | AGCT | 6 cut(s) | 754, 802, 986, 1013, 1092, 1169 |
| AlwI | GGATC | 2 cut(s) | 308, 321 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 120, 155, 941 |
| Ama87I | CYCGRG | 3 cut(s) | 125, 734, 783 |
| AoxI | GGCC | 2 cut(s) | 457, 676 |
| ApaI | GGGCCC | 1 cut(s) | 461 |
| ApeKI | GCWGC | 9 cut(s) | 114, 385, 395, 398, 627, 635, 802, 1100, 1237 |
| ApoI | RAATTY | 2 cut(s) | 191, 1281 |
| AspLEI | GCGC | 1 cut(s) | 897 |
| AspS9I | GGNCC | 3 cut(s) | 457, 458, 695 |
| AsuHPI | GGTGA | 4 cut(s) | 541, 552, 567, 581 |
| AsuII | TTCGAA | 1 cut(s) | 241 |
| AsuNHI | GCTAGC | 1 cut(s) | 320 |
| AvaI | CYCGRG | 3 cut(s) | 125, 734, 783 |
| AvaII | GGWCC | 1 cut(s) | 695 |
| BaeGI | GKGCMC | 2 cut(s) | 461, 928 |
| BalI | TGGCCA | 1 cut(s) | 678 |
| BamHI | GGATCC | 1 cut(s) | 313 |
| BanI | GGYRCC | 2 cut(s) | 779, 923 |
| BanII | GRGCYC | 2 cut(s) | 415, 461 |
| BauI | CACGAG | 1 cut(s) | 486 |
| BbsI | GAAGAC | 1 cut(s) | 111 |
| BbvI | GCAGC | 9 cut(s) | 126, 382, 385, 397, 622, 639, 789, 1087, 1224 |
| BccI | CCATC | 4 cut(s) | 62, 73, 622, 721 |
| BceAI | ACGGC | 1 cut(s) | 82 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 106, 140 |
| BciT130I | CCWGG | 3 cut(s) | 564, 921, 1196 |
| BfaI | CTAG | 5 cut(s) | 321, 335, 405, 899, 992 |
| BfmI | CTRYAG | 4 cut(s) | 112, 531, 625, 861 |
| BfoI | RGCGCY | 1 cut(s) | 898 |
| Bme1390I | CCNGG | 3 cut(s) | 564, 921, 1196 |
| Bme18I | GGWCC | 1 cut(s) | 695 |
| BmeT110I | CYCGRG | 3 cut(s) | 125, 734, 783 |
| BmgT120I | GGNCC | 3 cut(s) | 457, 458, 695 |
| BmiI | GGNNCC | 4 cut(s) | 315, 459, 781, 925 |
| BmrFI | CCNGG | 3 cut(s) | 564, 921, 1196 |
| BmrI | ACTGGG | 2 cut(s) | 239, 464 |
| BmsI | GCATC | 4 cut(s) | 14, 126, 397, 711 |
| BmtI | GCTAGC | 1 cut(s) | 324 |
| BmuI | ACTGGG | 2 cut(s) | 239, 464 |
| BpiI | GAAGAC | 1 cut(s) | 111 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 755, 787 |
| BpmI | CTGGAG | 1 cut(s) | 918 |
| Bpu14I | TTCGAA | 1 cut(s) | 241 |
| BpuEI | CTTGAG | 1 cut(s) | 1031 |
| BsaJI | CCNNGG | 3 cut(s) | 325, 784, 1112 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 467, 941 |
| Bse1I | ACTGG | 3 cut(s) | 234, 459, 935 |
| Bse3DI | GCAATG | 1 cut(s) | 1147 |
| BseBI | CCWGG | 3 cut(s) | 564, 921, 1196 |
| BseDI | CCNNGG | 3 cut(s) | 325, 784, 1112 |
| BseGI | GGATG | 2 cut(s) | 65, 1204 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 467, 941 |
| BseMI | GCAATG | 1 cut(s) | 1147 |
| BseMII | CTCAG | 4 cut(s) | 366, 708, 834, 1188 |
| BseNI | ACTGG | 3 cut(s) | 234, 459, 935 |
| BseRI | GAGGAG | 1 cut(s) | 61 |
| BseSI | GKGCMC | 2 cut(s) | 461, 928 |
| BseXI | GCAGC | 9 cut(s) | 126, 382, 385, 397, 622, 639, 789, 1087, 1224 |
| BseYI | CCCAGC | 1 cut(s) | 148 |
| BsgI | GTGCAG | 1 cut(s) | 152 |
| BshFI | GGCC | 2 cut(s) | 459, 678 |
| BshNI | GGYRCC | 2 cut(s) | 779, 923 |
| BsiHKCI | CYCGRG | 3 cut(s) | 125, 734, 783 |
| BsiSI | CCGG | 1 cut(s) | 317 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 467, 941 |
| BsmI | GAATGC | 1 cut(s) | 284 |
| BsnI | GGCC | 2 cut(s) | 459, 678 |
| BsoBI | CYCGRG | 3 cut(s) | 125, 734, 783 |
| Bsp119I | TTCGAA | 1 cut(s) | 241 |
| Bsp120I | GGGCCC | 1 cut(s) | 457 |
| Bsp1286I | GDGCHC | 3 cut(s) | 415, 461, 928 |
| Bsp143I | GATC | 3 cut(s) | 161, 313, 768 |
| Bsp19I | CCATGG | 1 cut(s) | 1112 |
| BspACI | CCGC | 1 cut(s) | 1235 |
| BspANI | GGCC | 2 cut(s) | 459, 678 |
| BspCNI | CTCAG | 4 cut(s) | 365, 709, 833, 1187 |
| BspLI | GGNNCC | 4 cut(s) | 315, 459, 781, 925 |
| BspMAI | CTGCAG | 3 cut(s) | 116, 629, 865 |
| BspOI | GCTAGC | 1 cut(s) | 324 |
| BspPI | GGATC | 2 cut(s) | 308, 321 |
| BspT104I | TTCGAA | 1 cut(s) | 241 |
| BspT107I | GGYRCC | 2 cut(s) | 779, 923 |
| BsrDI | GCAATG | 1 cut(s) | 1147 |
| BsrI | ACTGG | 3 cut(s) | 234, 459, 935 |
| BssECI | CCNNGG | 3 cut(s) | 325, 784, 1112 |
| BssMI | GATC | 3 cut(s) | 161, 313, 768 |
| BssSI | CACGAG | 1 cut(s) | 486 |
| BssT1I | CCWWGG | 2 cut(s) | 325, 1112 |
| Bst2BI | CACGAG | 1 cut(s) | 486 |
| Bst2UI | CCWGG | 3 cut(s) | 564, 921, 1196 |
| Bst4CI | ACNGT | 3 cut(s) | 157, 173, 223 |
| Bst6I | CTCTTC | 1 cut(s) | 28 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 120, 869 |
| BstBI | TTCGAA | 1 cut(s) | 241 |
| BstC8I | GCNNGC | 6 cut(s) | 322, 513, 680, 807, 1221, 1247 |
| BstDEI | CTNAG | 4 cut(s) | 352, 717, 820, 1174 |
| BstDSI | CCRYGG | 1 cut(s) | 1112 |
| BstEII | GGTNACC | 1 cut(s) | 558 |
| BstF5I | GGATG | 2 cut(s) | 65, 1204 |
| BstH2I | RGCGCY | 1 cut(s) | 898 |
| BstHHI | GCGC | 1 cut(s) | 897 |
| BstKTI | GATC | 3 cut(s) | 164, 316, 771 |
| BstMBI | GATC | 3 cut(s) | 161, 313, 768 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 11, 120, 382, 869, 878, 1175, 1220, 1246 |
| BstNI | CCWGG | 3 cut(s) | 564, 921, 1196 |
| BstNSI | RCATGY | 1 cut(s) | 1249 |
| BstPI | GGTNACC | 1 cut(s) | 558 |
| BstSCI | CCNGG | 3 cut(s) | 562, 919, 1194 |
| BstSFI | CTRYAG | 4 cut(s) | 112, 531, 625, 861 |
| BstSLI | GKGCMC | 2 cut(s) | 461, 928 |
| BstV1I | GCAGC | 9 cut(s) | 126, 382, 385, 397, 622, 639, 789, 1087, 1224 |
| BstV2I | GAAGAC | 1 cut(s) | 111 |
| BstX2I | RGATCY | 1 cut(s) | 313 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 291, 1095 |
| BstYI | RGATCY | 1 cut(s) | 313 |
| BsuRI | GGCC | 2 cut(s) | 459, 678 |
| BtgI | CCRYGG | 1 cut(s) | 1112 |
| BtsCI | GGATG | 2 cut(s) | 65, 1204 |
| BtsI | GCAGTG | 2 cut(s) | 164, 630 |
| BtsIMutI | CAGTG | 4 cut(s) | 153, 164, 227, 630 |
| Cac8I | GCNNGC | 6 cut(s) | 322, 513, 680, 807, 1221, 1247 |
| CaiI | CAGNNNCTG | 3 cut(s) | 120, 155, 941 |
| CfoI | GCGC | 1 cut(s) | 897 |
| Cfr13I | GGNCC | 3 cut(s) | 457, 458, 695 |
| CseI | GACGC | 1 cut(s) | 390 |
| CsiI | ACCWGGT | 1 cut(s) | 919 |
| Csp6I | GTAC | 1 cut(s) | 422 |
| CviAII | CATG | 4 cut(s) | 1113, 1210, 1246, 1313 |
| CviQI | GTAC | 1 cut(s) | 422 |
| DdeI | CTNAG | 4 cut(s) | 352, 717, 820, 1174 |
| DpnI | GATC | 3 cut(s) | 163, 315, 770 |
| DpnII | GATC | 3 cut(s) | 161, 313, 768 |
| EaeI | YGGCCR | 1 cut(s) | 676 |
| Eam1104I | CTCTTC | 1 cut(s) | 28 |
| EarI | CTCTTC | 1 cut(s) | 28 |
| Eco130I | CCWWGG | 2 cut(s) | 325, 1112 |
| Eco24I | GRGCYC | 2 cut(s) | 415, 461 |
| Eco47I | GGWCC | 1 cut(s) | 695 |
| Eco88I | CYCGRG | 3 cut(s) | 125, 734, 783 |
| Eco91I | GGTNACC | 1 cut(s) | 558 |
| EcoO109I | RGGNCCY | 1 cut(s) | 458 |
| EcoO65I | GGTNACC | 1 cut(s) | 558 |
| EcoRII | CCWGG | 3 cut(s) | 562, 919, 1194 |
| EcoT14I | CCWWGG | 2 cut(s) | 325, 1112 |
| EcoT38I | GRGCYC | 2 cut(s) | 415, 461 |
| ErhI | CCWWGG | 2 cut(s) | 325, 1112 |
| FaeI | CATG | 4 cut(s) | 1116, 1213, 1249, 1316 |
| FatI | CATG | 4 cut(s) | 1112, 1209, 1245, 1312 |
| FokI | GGATG | 2 cut(s) | 52, 1211 |
| FriOI | GRGCYC | 2 cut(s) | 415, 461 |
| FspBI | CTAG | 5 cut(s) | 321, 335, 405, 899, 992 |
| GlaI | GCGC | 1 cut(s) | 896 |
| GsaI | CCCAGC | 1 cut(s) | 152 |
| GsuI | CTGGAG | 1 cut(s) | 918 |
| HaeII | RGCGCY | 1 cut(s) | 898 |
| HaeIII | GGCC | 2 cut(s) | 459, 678 |
| HapII | CCGG | 1 cut(s) | 317 |
| HgaI | GACGC | 1 cut(s) | 390 |
| HhaI | GCGC | 1 cut(s) | 897 |
| Hin1II | CATG | 4 cut(s) | 1116, 1213, 1249, 1316 |
| Hin6I | GCGC | 1 cut(s) | 895 |
| HinP1I | GCGC | 1 cut(s) | 895 |
| HinfI | GANTC | 8 cut(s) | 61, 107, 260, 344, 359, 572, 737, 764 |
| HpaII | CCGG | 1 cut(s) | 317 |
| HphI | GGTGA | 4 cut(s) | 541, 552, 567, 581 |
| Hpy188I | TCNGA | 5 cut(s) | 40, 142, 355, 364, 718 |
| Hpy188III | TCNNGA | 7 cut(s) | 58, 89, 307, 335, 450, 488, 734 |
| Hpy99I | CGWCG | 1 cut(s) | 95 |
| HpyAV | CCTTC | 5 cut(s) | 27, 304, 423, 471, 787 |
| HpyCH4III | ACNGT | 3 cut(s) | 157, 173, 223 |
| HpyCH4IV | ACGT | 3 cut(s) | 538, 850, 1073 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 11, 120, 382, 869, 878, 1175, 1220, 1246 |
| HpyF3I | CTNAG | 4 cut(s) | 352, 717, 820, 1174 |
| HpySE526I | ACGT | 3 cut(s) | 538, 850, 1073 |
| Hsp92II | CATG | 4 cut(s) | 1116, 1213, 1249, 1316 |
| HspAI | GCGC | 1 cut(s) | 895 |
| Kzo9I | GATC | 3 cut(s) | 161, 313, 768 |
| LmnI | GCTCC | 3 cut(s) | 19, 143, 508 |
| Lsp1109I | GCAGC | 9 cut(s) | 126, 382, 385, 397, 622, 639, 789, 1087, 1224 |
| LweI | GCATC | 4 cut(s) | 14, 126, 397, 711 |
| MabI | ACCWGGT | 1 cut(s) | 919 |
| MaeI | CTAG | 5 cut(s) | 321, 335, 405, 899, 992 |
| MaeII | ACGT | 3 cut(s) | 538, 850, 1073 |
| MaeIII | GTNAC | 6 cut(s) | 217, 261, 297, 558, 812, 1069 |
| MalI | GATC | 3 cut(s) | 163, 315, 770 |
| MboI | GATC | 3 cut(s) | 161, 313, 768 |
| MboII | GAAGA | 7 cut(s) | 15, 18, 21, 24, 27, 116, 1032 |
| MflI | RGATCY | 1 cut(s) | 313 |
| MhlI | GDGCHC | 3 cut(s) | 415, 461, 928 |
| MlsI | TGGCCA | 1 cut(s) | 678 |
| MluCI | AATT | 7 cut(s) | 191, 285, 475, 727, 867, 1026, 1281 |
| MluNI | TGGCCA | 1 cut(s) | 678 |
| MlyI | GAGTC | 6 cut(s) | 55, 101, 269, 353, 746, 773 |
| Mox20I | TGGCCA | 1 cut(s) | 678 |
| MscI | TGGCCA | 1 cut(s) | 678 |
| MseI | TTAA | 2 cut(s) | 474, 1082 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1197 |
| Msp20I | TGGCCA | 1 cut(s) | 678 |
| MspA1I | CMGCKG | 1 cut(s) | 1237 |
| MspI | CCGG | 1 cut(s) | 317 |
| MspR9I | CCNGG | 3 cut(s) | 564, 921, 1196 |
| Mva1269I | GAATGC | 1 cut(s) | 284 |
| MvaI | CCWGG | 3 cut(s) | 564, 921, 1196 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 11, 120, 382, 869, 878, 1175, 1220, 1246 |
| NcoI | CCATGG | 1 cut(s) | 1112 |
| NdeII | GATC | 3 cut(s) | 161, 313, 768 |
| NheI | GCTAGC | 1 cut(s) | 320 |
| NlaIII | CATG | 4 cut(s) | 1116, 1213, 1249, 1316 |
| NlaIV | GGNNCC | 4 cut(s) | 315, 459, 781, 925 |
| NmuCI | GTSAC | 4 cut(s) | 217, 261, 558, 1069 |
| NspI | RCATGY | 1 cut(s) | 1249 |
| NspV | TTCGAA | 1 cut(s) | 241 |
| PaeI | GCATGC | 1 cut(s) | 1249 |
| PaeR7I | CTCGAG | 1 cut(s) | 125 |
| PctI | GAATGC | 1 cut(s) | 284 |
| PfeI | GAWTC | 2 cut(s) | 344, 572 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 941 |
| PleI | GAGTC | 6 cut(s) | 55, 101, 268, 353, 745, 772 |
| PpsI | GAGTC | 6 cut(s) | 55, 101, 268, 353, 745, 772 |
| Psp6I | CCWGG | 3 cut(s) | 562, 919, 1194 |
| PspEI | GGTNACC | 1 cut(s) | 558 |
| PspFI | CCCAGC | 1 cut(s) | 148 |
| PspGI | CCWGG | 3 cut(s) | 562, 919, 1194 |
| PspN4I | GGNNCC | 4 cut(s) | 315, 459, 781, 925 |
| PspOMI | GGGCCC | 1 cut(s) | 457 |
| PspPI | GGNCC | 3 cut(s) | 457, 458, 695 |
| PspXI | VCTCGAGB | 1 cut(s) | 125 |
| PstI | CTGCAG | 3 cut(s) | 116, 629, 865 |
| PstNI | CAGNNNCTG | 3 cut(s) | 120, 155, 941 |
| PsuI | RGATCY | 1 cut(s) | 313 |
| RsaI | GTAC | 1 cut(s) | 423 |
| RsaNI | GTAC | 1 cut(s) | 422 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1197 |
| SaqAI | TTAA | 2 cut(s) | 474, 1082 |
| Sau3AI | GATC | 3 cut(s) | 161, 313, 768 |
| Sau96I | GGNCC | 3 cut(s) | 457, 458, 695 |
| SchI | GAGTC | 6 cut(s) | 55, 101, 269, 353, 746, 773 |
| ScrFI | CCNGG | 3 cut(s) | 564, 921, 1196 |
| SduI | GDGCHC | 3 cut(s) | 415, 461, 928 |
| SexAI | ACCWGGT | 1 cut(s) | 919 |
| SfaNI | GCATC | 4 cut(s) | 14, 126, 397, 711 |
| SfcI | CTRYAG | 4 cut(s) | 112, 531, 625, 861 |
| Sfr274I | CTCGAG | 1 cut(s) | 125 |
| SfuI | TTCGAA | 1 cut(s) | 241 |
| SinI | GGWCC | 1 cut(s) | 695 |
| SlaI | CTCGAG | 1 cut(s) | 125 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1197 |
| SmlI | CTYRAG | 2 cut(s) | 125, 1046 |
| SmoI | CTYRAG | 2 cut(s) | 125, 1046 |
| SphI | GCATGC | 1 cut(s) | 1249 |
| Sse9I | AATT | 7 cut(s) | 191, 285, 475, 727, 867, 1026, 1281 |
| SsiI | CCGC | 1 cut(s) | 1235 |
| SspMI | CTAG | 5 cut(s) | 321, 335, 405, 899, 992 |
| StyD4I | CCNGG | 3 cut(s) | 562, 919, 1194 |
| StyI | CCWWGG | 2 cut(s) | 325, 1112 |
| TaaI | ACNGT | 3 cut(s) | 157, 173, 223 |
| TaiI | ACGT | 3 cut(s) | 541, 853, 1076 |
| TaqI | TCGA | 5 cut(s) | 126, 241, 767, 891, 1018 |
| TasI | AATT | 7 cut(s) | 191, 285, 475, 727, 867, 1026, 1281 |
| TauI | GCSGC | 1 cut(s) | 1237 |
| TfiI | GAWTC | 2 cut(s) | 344, 572 |
| Tru1I | TTAA | 2 cut(s) | 474, 1082 |
| Tru9I | TTAA | 2 cut(s) | 474, 1082 |
| TscAI | CASTG | 4 cut(s) | 160, 171, 234, 637 |
| TseFI | GTSAC | 4 cut(s) | 217, 261, 558, 1069 |
| TseI | GCWGC | 9 cut(s) | 114, 385, 395, 398, 627, 635, 802, 1100, 1237 |
| Tsp45I | GTSAC | 4 cut(s) | 217, 261, 558, 1069 |
| TspDTI | ATGAA | 2 cut(s) | 117, 1215 |
| TspGWI | ACGGA | 1 cut(s) | 961 |
| TspRI | CASTG | 4 cut(s) | 160, 171, 234, 637 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 941 |
| VpaK11BI | GGWCC | 1 cut(s) | 695 |
| XapI | RAATTY | 2 cut(s) | 191, 1281 |
| XbaI | TCTAGA | 1 cut(s) | 334 |
| XceI | RCATGY | 1 cut(s) | 1249 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 54, 1119 |
| XhoI | CTCGAG | 1 cut(s) | 125 |
| XspI | CTAG | 5 cut(s) | 321, 335, 405, 899, 992 |