FvH4_4g15350

amine oxidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0006136
Physical Location & Seq
Forward (+)
19038638 .. 19038892
255 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g15350.t1

Sequence Viewer

Length: 255 bp
ATGGACCCAACTGATGAATGGTACTACAAGACCTTCTTCGAAGCCGGTGAATTTGGGTTTGGTCAATCTGCTTCGCCCCCAGAGCCCTTGACCGATTGCCCTGAAAATGTTGTATTCATGGACGCTCACTATGCTAGCTCAGATGGGACTCCGGTGAAAATAACAAATGCTTTTTGCATATTTGAGCAACATGCAGGGAGTGCCTTGTGGCGGCACACTGAAATAGCAATTCCAGGGGAACTGGCAAGGCATTGA

Protein Analysis

85

Amino Acids

9.38

Weight (kDa)

4.51

Isoelectric Point (pI)

51.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_amine_oxid PF01179 1 - 76 3.5e-21 Copper amine oxidase, enzyme domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 211
AcsI RAATTY 1 cut(s) 50
AfaI GTAC 1 cut(s) 23
AfiI CCNNNNNNNGG 1 cut(s) 210
AjnI CCWGG 1 cut(s) 232
AjuI GAANNNNNNNTTGG 2 cut(s) 42, 74
AluBI AGCT 1 cut(s) 138
AluI AGCT 1 cut(s) 138
ApoI RAATTY 1 cut(s) 50
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 2 cut(s) 59, 166
AsuII TTCGAA 1 cut(s) 39
AsuNHI GCTAGC 1 cut(s) 134
AvaII GGWCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 87
BccI CCATC 1 cut(s) 137
BciT130I CCWGG 1 cut(s) 234
BfaI CTAG 1 cut(s) 135
BisI GCNGC 1 cut(s) 212
BlsI GCNGC 1 cut(s) 213
Bme1390I CCNGG 1 cut(s) 234
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 234
BmtI GCTAGC 1 cut(s) 138
Bpu14I TTCGAA 1 cut(s) 39
BsaJI CCNNGG 1 cut(s) 233
BsaWI WCCGGW 1 cut(s) 151
Bsc4I CCNNNNNNNGG 1 cut(s) 210
Bse118I RCCGGY 1 cut(s) 44
Bse1I ACTGG 1 cut(s) 246
BseBI CCWGG 1 cut(s) 234
BseDI CCNNGG 1 cut(s) 233
BseLI CCNNNNNNNGG 1 cut(s) 210
BseMII CTCAG 1 cut(s) 153
BseNI ACTGG 1 cut(s) 246
BsiSI CCGG 2 cut(s) 45, 152
BslFI GGGAC 1 cut(s) 160
BslI CCNNNNNNNGG 1 cut(s) 210
BsmFI GGGAC 1 cut(s) 160
Bsp119I TTCGAA 1 cut(s) 39
Bsp1286I GDGCHC 1 cut(s) 87
BspACI CCGC 1 cut(s) 211
BspCNI CTCAG 1 cut(s) 152
BspLI GGNNCC 1 cut(s) 6
BspOI GCTAGC 1 cut(s) 138
BspT104I TTCGAA 1 cut(s) 39
BsrFI RCCGGY 1 cut(s) 44
BsrI ACTGG 1 cut(s) 246
BssAI RCCGGY 1 cut(s) 44
BssECI CCNNGG 1 cut(s) 233
Bst2UI CCWGG 1 cut(s) 234
BstAPI GCANNNNNTGC 1 cut(s) 200
BstBI TTCGAA 1 cut(s) 39
BstC8I GCNNGC 1 cut(s) 136
BstDEI CTNAG 1 cut(s) 139
BstMWI GCNNNNNNNGC 3 cut(s) 82, 131, 200
BstNI CCWGG 1 cut(s) 234
BstNSI RCATGY 1 cut(s) 194
BstSCI CCNGG 1 cut(s) 232
BtsIMutI CAGTG 1 cut(s) 216
Cac8I GCNNGC 1 cut(s) 136
Cfr10I RCCGGY 1 cut(s) 44
Cfr13I GGNCC 1 cut(s) 4
CseI GACGC 1 cut(s) 131
Csp6I GTAC 1 cut(s) 22
CviAII CATG 2 cut(s) 118, 191
CviJI RGCY 3 cut(s) 44, 85, 138
CviKI_1 RGCY 3 cut(s) 44, 85, 138
CviQI GTAC 1 cut(s) 22
DdeI CTNAG 1 cut(s) 139
Eco24I GRGCYC 1 cut(s) 87
Eco47I GGWCC 1 cut(s) 4
EcoRII CCWGG 1 cut(s) 232
EcoT38I GRGCYC 1 cut(s) 87
FaeI CATG 2 cut(s) 121, 194
FaiI YATR 4 cut(s) 119, 132, 179, 192
FalI AAGNNNNNCTT 2 cut(s) 20, 52
FaqI GGGAC 1 cut(s) 160
FatI CATG 2 cut(s) 117, 190
Fnu4HI GCNGC 1 cut(s) 212
FriOI GRGCYC 1 cut(s) 87
Fsp4HI GCNGC 1 cut(s) 212
FspBI CTAG 1 cut(s) 135
GluI GCNGC 1 cut(s) 212
HapII CCGG 2 cut(s) 45, 152
HgaI GACGC 1 cut(s) 131
Hin1II CATG 2 cut(s) 121, 194
HinfI GANTC 1 cut(s) 148
HpaII CCGG 2 cut(s) 45, 152
HphI GGTGA 2 cut(s) 59, 166
Hpy188I TCNGA 1 cut(s) 142
HpyAV CCTTC 1 cut(s) 43
HpyCH4V TGCA 2 cut(s) 177, 194
HpyF10VI GCNNNNNNNGC 3 cut(s) 82, 131, 200
HpyF3I CTNAG 1 cut(s) 139
Hsp92II CATG 2 cut(s) 121, 194
LpnPI CCDG 8 cut(s) 58, 93, 114, 165, 180, 219, 227, 246
MaeI CTAG 1 cut(s) 135
MboII GAAGA 1 cut(s) 28
MhlI GDGCHC 1 cut(s) 87
MluCI AATT 2 cut(s) 50, 228
MlyI GAGTC 1 cut(s) 142
MspI CCGG 2 cut(s) 45, 152
MspR9I CCNGG 1 cut(s) 234
MvaI CCWGG 1 cut(s) 234
MwoI GCNNNNNNNGC 3 cut(s) 82, 131, 200
NheI GCTAGC 1 cut(s) 134
NlaIII CATG 2 cut(s) 121, 194
NlaIV GGNNCC 1 cut(s) 6
NspI RCATGY 1 cut(s) 194
NspV TTCGAA 1 cut(s) 39
PkrI GCNGC 1 cut(s) 213
PleI GAGTC 1 cut(s) 142
PpsI GAGTC 1 cut(s) 142
Psp6I CCWGG 1 cut(s) 232
PspGI CCWGG 1 cut(s) 232
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 4
RsaI GTAC 1 cut(s) 23
RsaNI GTAC 1 cut(s) 22
SatI GCNGC 1 cut(s) 212
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 1 cut(s) 142
ScrFI CCNGG 1 cut(s) 234
SduI GDGCHC 1 cut(s) 87
SetI ASST 2 cut(s) 35, 140
SfuI TTCGAA 1 cut(s) 39
SinI GGWCC 1 cut(s) 4
Sse9I AATT 2 cut(s) 50, 228
SsiI CCGC 1 cut(s) 211
SspMI CTAG 1 cut(s) 135
StyD4I CCNGG 1 cut(s) 232
TaqI TCGA 1 cut(s) 39
TaqII GACCGA 1 cut(s) 107
TasI AATT 2 cut(s) 50, 228
TauI GCSGC 1 cut(s) 214
TscAI CASTG 1 cut(s) 223
TspDTI ATGAA 2 cut(s) 30, 106
TspRI CASTG 1 cut(s) 223
VpaK11BI GGWCC 1 cut(s) 4
XapI RAATTY 1 cut(s) 50
XceI RCATGY 1 cut(s) 194
XcmI CCANNNNNNNNNTGG 1 cut(s) 15
XspI CTAG 1 cut(s) 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.