Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0006136

Physical Location & Seq

Genomic Coordinates Reverse (-)

23460450 .. 23460964

Gene Structure 515 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0141600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGTGACGGCTGCTCAGGGAGAGGGTGCGCGATGGACACGAGAGATTGGTTGCGTGGTGTCAGTCCGGTTTTCGGACCTTGCAGCAGGGTCATTGTTCCTTCATGATGGGTATGGGGAGGGCGACAATGAGTTCCCAGCTTCTGGTGTTGCTTTTCATCAGGGGTTTGGGCGTTGGAGTTTTGGGAGTCTAGTGGTAGGGGACGGTTGCTACTGGTTCTCTATCGGCAGCGTTTGGTCTGCGGCTGTTGGGGGCTGTAATCGGAGGCGGCGTGACGATCTGGGAGGTGGGGAGGTAGCGACGGTGCTGTCTGTGCAGCTGCGTTATTGGGCAAGATCCACAGCTTGGGCTCACTTTGCCCTAGCTCAGTTGTTGGGCTATCCTGGGCTTGGATGGTCTTGGGCCTGGGGTTTCTCTCTAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005623 GO:0007154 GO:0007165 GO:0008131 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009888 GO:0009987 GO:0010033 GO:0010035 GO:0010087 GO:0010089 GO:0010941 GO:0016491 GO:0016638 GO:0016641 GO:0023052 GO:0030312 GO:0032502 GO:0032870 GO:0042221 GO:0043067 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0052597 GO:0055114 GO:0065007 GO:0070887 GO:0071229 GO:0071241 GO:0071310 GO:0071395 GO:0071495 GO:0071944 GO:0090059 GO:0097184 GO:0097185 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00260 ko00350 ko00360 ko00410 ko00950 ko00960 ko01100 ko01110 map00260 map00350 map00360 map00410 map00950 map00960 map01100 map01110

Pfam Domains

Protein Families

Cu_amine_oxid Cu_amine_oxidN2 Cu_amine_oxidN3

Protein Analysis

141

Amino Acids

15.24

Weight (kDa)

5.87

Isoelectric Point (pI)

28.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14940
fragaria_vesca	FvH4_4g15350 FvH4_4g15390
malus_domestica	MD13G1191800.v1.1
prunus_persica	Prupe.1G012100_v2.0.a1 Prupe.1G012100_v2.0.a1
pyrus_communis	pycom13g16440
rosa_chinensis	RchiOBHm_Chr4g0416411 RchiOBHm_Chr5g0045871
rosa_laevigata	RLG00000007984 RLG00000034395
rosa_multiflora	Rmu_sc0001488.1_g000020
rosa_roxburghii	Rroxscaffold_1G00035130 Rroxscaffold_1G00035220 Rroxscaffold_5G00360240
rosa_rugosa	Rorug04G0141600 Rorug04G0141700 Rorug05G0226600
rosa_samantha	Rh4AG204000 Rh4BG201400 Rh4CG215200 Rh4DG201300 Rh5BG316100 Rh5DG326400
rosa_wichuraiana	Rw0G018920 Rw4G017270 Rw5G028820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	307
AccB7I	CCANNNNNTGG	2 cut(s)	143, 345
AccII	CGCG	1 cut(s)	31
AciI	CCGC	2 cut(s)	242, 268
AclWI	GGATC	1 cut(s)	330
AfiI	CCNNNNNNNGG	4 cut(s)	73, 143, 345, 389
AjnI	CCWGG	2 cut(s)	382, 404
AluBI	AGCT	4 cut(s)	140, 319, 344, 365
AluI	AGCT	4 cut(s)	140, 319, 344, 365
AlwI	GGATC	1 cut(s)	330
AlwNI	CAGNNNCTG	1 cut(s)	143
AoxI	GGCC	1 cut(s)	402
ApeKI	GCWGC	5 cut(s)	11, 83, 228, 316, 319
AspLEI	GCGC	1 cut(s)	31
AspS9I	GGNCC	2 cut(s)	76, 402
AsuHPI	GGTGA	1 cut(s)	16
AvaII	GGWCC	1 cut(s)	76
BanII	GRGCYC	1 cut(s)	352
BauI	CACGAG	1 cut(s)	39
BbvI	GCAGC	4 cut(s)	95, 240, 306, 328
BccI	CCATC	3 cut(s)	27, 101, 387
BceAI	ACGGC	1 cut(s)	24
BciT130I	CCWGG	2 cut(s)	384, 406
BfaI	CTAG	3 cut(s)	191, 362, 419
BisI	GCNGC	7 cut(s)	12, 84, 229, 243, 269, 317, 320
BlsI	GCNGC	7 cut(s)	13, 85, 230, 244, 270, 318, 321
Bme1390I	CCNGG	2 cut(s)	384, 406
Bme18I	GGWCC	1 cut(s)	76
BmgT120I	GGNCC	2 cut(s)	76, 402
BmrFI	CCNGG	2 cut(s)	384, 406
Bpu10I	CCTNAGC	1 cut(s)	15
BsaJI	CCNNGG	2 cut(s)	383, 405
BsaWI	WCCGGW	1 cut(s)	66
BsaXI	ACNNNNNCTCC	2 cut(s)	256, 286
Bsc4I	CCNNNNNNNGG	4 cut(s)	73, 143, 345, 389
Bse1I	ACTGG	1 cut(s)	218
BseBI	CCWGG	2 cut(s)	384, 406
BseDI	CCNNGG	2 cut(s)	383, 405
BseGI	GGATG	1 cut(s)	398
BseLI	CCNNNNNNNGG	4 cut(s)	73, 143, 345, 389
BseMII	CTCAG	2 cut(s)	29, 380
BseNI	ACTGG	1 cut(s)	218
BseXI	GCAGC	4 cut(s)	95, 240, 306, 328
BseYI	CCCAGC	1 cut(s)	136
BsgI	GTGCAG	1 cut(s)	335
Bsh1236I	CGCG	1 cut(s)	31
BshFI	GGCC	1 cut(s)	404
BsiSI	CCGG	1 cut(s)	67
BslFI	GGGAC	1 cut(s)	215
BslI	CCNNNNNNNGG	4 cut(s)	73, 143, 345, 389
BsmFI	GGGAC	1 cut(s)	215
BsnI	GGCC	1 cut(s)	404
Bsp1286I	GDGCHC	1 cut(s)	352
Bsp143I	GATC	2 cut(s)	277, 335
BspACI	CCGC	2 cut(s)	242, 268
BspANI	GGCC	1 cut(s)	404
BspCNI	CTCAG	2 cut(s)	28, 379
BspFNI	CGCG	1 cut(s)	31
BspHI	TCATGA	1 cut(s)	103
BspPI	GGATC	1 cut(s)	330
BsrI	ACTGG	1 cut(s)	218
BssECI	CCNNGG	2 cut(s)	383, 405
BssMI	GATC	2 cut(s)	277, 335
BssSI	CACGAG	1 cut(s)	39
Bst2BI	CACGAG	1 cut(s)	39
Bst2UI	CCWGG	2 cut(s)	384, 406
Bst4CI	ACNGT	2 cut(s)	206, 304
BstDEI	CTNAG	2 cut(s)	15, 366
BstF5I	GGATG	1 cut(s)	398
BstFNI	CGCG	1 cut(s)	31
BstHHI	GCGC	1 cut(s)	31
BstKTI	GATC	2 cut(s)	280, 338
BstMBI	GATC	2 cut(s)	277, 335
BstMWI	GCNNNNNNNGC	2 cut(s)	313, 356
BstNI	CCWGG	2 cut(s)	384, 406
BstSCI	CCNGG	2 cut(s)	382, 404
BstUI	CGCG	1 cut(s)	31
BstV1I	GCAGC	4 cut(s)	95, 240, 306, 328
BstX2I	RGATCY	1 cut(s)	335
BstYI	RGATCY	1 cut(s)	335
BsuRI	GGCC	1 cut(s)	404
BtgZI	GCGATG	1 cut(s)	46
BtsCI	GGATG	1 cut(s)	398
CaiI	CAGNNNCTG	1 cut(s)	143
CciI	TCATGA	1 cut(s)	103
CfoI	GCGC	1 cut(s)	31
Cfr13I	GGNCC	2 cut(s)	76, 402
CviAII	CATG	1 cut(s)	104
DdeI	CTNAG	2 cut(s)	15, 366
DpnI	GATC	2 cut(s)	279, 337
DpnII	GATC	2 cut(s)	277, 335
DrdI	GACNNNNNNGTC	1 cut(s)	307
DseDI	GACNNNNNNGTC	1 cut(s)	307
Eco24I	GRGCYC	1 cut(s)	352
Eco47I	GGWCC	1 cut(s)	76
EcoRII	CCWGG	2 cut(s)	382, 404
EcoT38I	GRGCYC	1 cut(s)	352
FaeI	CATG	1 cut(s)	107
FaiI	YATR	2 cut(s)	105, 114
FaqI	GGGAC	1 cut(s)	215
FatI	CATG	1 cut(s)	103
Fnu4HI	GCNGC	7 cut(s)	12, 84, 229, 243, 269, 317, 320
FokI	GGATG	1 cut(s)	405
FriOI	GRGCYC	1 cut(s)	352
Fsp4HI	GCNGC	7 cut(s)	12, 84, 229, 243, 269, 317, 320
FspBI	CTAG	3 cut(s)	191, 362, 419
GlaI	GCGC	1 cut(s)	30
GluI	GCNGC	7 cut(s)	12, 84, 229, 243, 269, 317, 320
GsaI	CCCAGC	1 cut(s)	140
HaeIII	GGCC	1 cut(s)	404
HapII	CCGG	1 cut(s)	67
HhaI	GCGC	1 cut(s)	31
Hin1II	CATG	1 cut(s)	107
Hin6I	GCGC	1 cut(s)	29
HinP1I	GCGC	1 cut(s)	29
HinfI	GANTC	1 cut(s)	187
HpaII	CCGG	1 cut(s)	67
HphI	GGTGA	1 cut(s)	16
Hpy188I	TCNGA	2 cut(s)	76, 264
Hpy188III	TCNNGA	2 cut(s)	104, 419
Hpy99I	CGWCG	1 cut(s)	304
HpyAV	CCTTC	1 cut(s)	110
HpyCH4III	ACNGT	2 cut(s)	206, 304
HpyCH4V	TGCA	2 cut(s)	83, 316
HpyF10VI	GCNNNNNNNGC	2 cut(s)	313, 356
HpyF3I	CTNAG	2 cut(s)	15, 366
Hsp92II	CATG	1 cut(s)	107
HspAI	GCGC	1 cut(s)	29
Kzo9I	GATC	2 cut(s)	277, 335
Lsp1109I	GCAGC	4 cut(s)	95, 240, 306, 328
MaeI	CTAG	3 cut(s)	191, 362, 419
MaeIII	GTNAC	2 cut(s)	4, 272
MalI	GATC	2 cut(s)	279, 337
MboI	GATC	2 cut(s)	277, 335
MflI	RGATCY	1 cut(s)	335
MhlI	GDGCHC	1 cut(s)	352
MlyI	GAGTC	1 cut(s)	196
MmeI	TCCRAC	1 cut(s)	155
MnlI	CCTC	5 cut(s)	16, 112, 258, 278, 286
MspA1I	CMGCKG	1 cut(s)	319
MspI	CCGG	1 cut(s)	67
MspR9I	CCNGG	2 cut(s)	384, 406
MvaI	CCWGG	2 cut(s)	384, 406
MvnI	CGCG	1 cut(s)	31
MwoI	GCNNNNNNNGC	2 cut(s)	313, 356
NdeII	GATC	2 cut(s)	277, 335
NlaIII	CATG	1 cut(s)	107
NmuCI	GTSAC	2 cut(s)	4, 272
PagI	TCATGA	1 cut(s)	103
PcsI	WCGNNNNNNNCGW	1 cut(s)	268
PflMI	CCANNNNNTGG	2 cut(s)	143, 345
PkrI	GCNGC	7 cut(s)	13, 85, 230, 244, 270, 318, 321
PleI	GAGTC	1 cut(s)	195
PpsI	GAGTC	1 cut(s)	195
Psp6I	CCWGG	2 cut(s)	382, 404
PspFI	CCCAGC	1 cut(s)	136
PspGI	CCWGG	2 cut(s)	382, 404
PspPI	GGNCC	2 cut(s)	76, 402
PstNI	CAGNNNCTG	1 cut(s)	143
PsuI	RGATCY	1 cut(s)	335
PvuII	CAGCTG	1 cut(s)	319
SatI	GCNGC	7 cut(s)	12, 84, 229, 243, 269, 317, 320
Sau3AI	GATC	2 cut(s)	277, 335
Sau96I	GGNCC	2 cut(s)	76, 402
SchI	GAGTC	1 cut(s)	196
ScrFI	CCNGG	2 cut(s)	384, 406
SduI	GDGCHC	1 cut(s)	352
SetI	ASST	7 cut(s)	81, 142, 289, 297, 321, 346, 367
SinI	GGWCC	1 cut(s)	76
SsiI	CCGC	2 cut(s)	242, 268
SspMI	CTAG	3 cut(s)	191, 362, 419
StyD4I	CCNGG	2 cut(s)	382, 404
TaaI	ACNGT	2 cut(s)	206, 304
TauI	GCSGC	2 cut(s)	245, 271
TseFI	GTSAC	2 cut(s)	4, 272
TseI	GCWGC	5 cut(s)	11, 83, 228, 316, 319
Tsp45I	GTSAC	2 cut(s)	4, 272
TspDTI	ATGAA	2 cut(s)	92, 146
Van91I	CCANNNNNTGG	2 cut(s)	143, 345
VpaK11BI	GGWCC	1 cut(s)	76
XbaI	TCTAGA	1 cut(s)	418
XspI	CTAG	3 cut(s)	191, 362, 419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.