Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0006136

Physical Location & Seq

Genomic Coordinates Forward (+)

51304697 .. 51306184

Gene Structure 1488 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00035220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGGAAGTCAAATTATGATCATTGCAACAAAACTAGTGGATTTTCCATTAAAGTGGGCAAACTGGGCTTTTCATGTTGGGTTCAAGGCTAGAGCAGGAATGGTAATTTCAACAGCTTCAGTATTTGATGCCACAAAGAAGTATAGGAGGGTGTTATATAGAGGGCATGTGTCTATGAGACCTTTGTGCCTTTACATGGATCCTCCCAATGAATGGTATTTCAGGACTTCTATGGATATAGGTGAATTTGGGTTTGGGAGATCAGCTGACGCTCTTCAGCCATTAATTGATTGTCCTGGAAATGCTGAATATGTAGATGGGTTTATTGCTGGGGCTGATGCGGAGGTACAGAAGGTACCAAGGGCTATTTGCATTTTTGAATTGTACTCGGGTGATGTTACAATGAGACATACTGAAATTAATGTACCTAGCAAATTGATAAGAAGTGGGCAGCAGGAGAAGACTCTAGTGGTTAGAATGGTGGCTACTGTGGGTAACTATGATTATGTTCTTGATTGGGAATTCAAGCAAAGTGGCAACACTAAAGTAGGGGTGGGCTTGACTAGTGTCTTGGAGGTGAAGGCCACGTCATACACAAATGCTCACCAGATGACGGAAAACGTGCACGGAATGTTAGTCTCAAAAAACACTCTTGCCGTTAACCACGACCACTTCCTCACGTACTATCTCGACCTACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005623 GO:0007154 GO:0007165 GO:0008131 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009888 GO:0009987 GO:0010033 GO:0010035 GO:0010087 GO:0010089 GO:0010941 GO:0016491 GO:0016638 GO:0016641 GO:0023052 GO:0030312 GO:0032502 GO:0032870 GO:0042221 GO:0043067 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0052597 GO:0055114 GO:0065007 GO:0070887 GO:0071229 GO:0071241 GO:0071310 GO:0071395 GO:0071495 GO:0071944 GO:0090059 GO:0097184 GO:0097185 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00260 ko00350 ko00360 ko00410 ko00950 ko00960 ko01100 ko01110 map00260 map00350 map00360 map00410 map00950 map00960 map01100 map01110

Pfam Domains

Protein Families

Cu_amine_oxid Cu_amine_oxidN2 Cu_amine_oxidN3

Protein Analysis

233

Amino Acids

26.2

Weight (kDa)

7.05

Isoelectric Point (pI)

21.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_amine_oxid	PF01179	17 - 232	4.1e-60	Copper amine oxidase, enzyme domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0006136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14940
fragaria_vesca	FvH4_4g15350 FvH4_4g15390
malus_domestica	MD13G1191800.v1.1
prunus_persica	Prupe.1G012100_v2.0.a1 Prupe.1G012100_v2.0.a1
pyrus_communis	pycom13g16440
rosa_chinensis	RchiOBHm_Chr4g0416411 RchiOBHm_Chr5g0045871
rosa_laevigata	RLG00000007984 RLG00000034395
rosa_multiflora	Rmu_sc0001488.1_g000020
rosa_roxburghii	Rroxscaffold_1G00035130 Rroxscaffold_1G00035220 Rroxscaffold_5G00360240
rosa_rugosa	Rorug04G0141600 Rorug04G0141700 Rorug05G0226600
rosa_samantha	Rh4AG204000 Rh4BG201400 Rh4CG215200 Rh4DG201300 Rh5BG316100 Rh5DG326400
rosa_wichuraiana	Rw0G018920 Rw4G017270 Rw5G028820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	355
AccB1I	GGYRCC	1 cut(s)	355
AccB7I	CCANNNNNTGG	1 cut(s)	213
AciI	CCGC	1 cut(s)	341
AclWI	GGATC	2 cut(s)	194, 207
AcsI	RAATTY	2 cut(s)	245, 521
AcuI	CTGAAG	2 cut(s)	102, 260
AfaI	GTAC	5 cut(s)	348, 357, 386, 426, 683
AfiI	CCNNNNNNNGG	3 cut(s)	196, 213, 613
AgsI	TTSAA	4 cut(s)	85, 111, 380, 526
AhlI	ACTAGT	2 cut(s)	34, 563
AjiI	CACGTC	1 cut(s)	588
AjnI	CCWGG	1 cut(s)	295
AjuI	GAANNNNNNNTTGG	2 cut(s)	237, 269
AluBI	AGCT	2 cut(s)	116, 266
AluI	AGCT	2 cut(s)	116, 266
Alw21I	GWGCWC	1 cut(s)	627
Alw26I	GTCTC	3 cut(s)	172, 400, 643
Alw44I	GTGCAC	1 cut(s)	623
AlwI	GGATC	2 cut(s)	194, 207
Ama87I	CYCGRG	1 cut(s)	388
AoxI	GGCC	1 cut(s)	582
ApaLI	GTGCAC	1 cut(s)	623
ApeKI	GCWGC	1 cut(s)	451
ApoI	RAATTY	2 cut(s)	245, 521
AseI	ATTAAT	2 cut(s)	284, 420
Asp718I	GGTACC	1 cut(s)	355
AsuHPI	GGTGA	4 cut(s)	254, 404, 589, 596
AvaI	CYCGRG	1 cut(s)	388
BaeGI	GKGCMC	1 cut(s)	627
BamHI	GGATCC	1 cut(s)	199
BanI	GGYRCC	1 cut(s)	355
BbsI	GAAGAC	1 cut(s)	467
Bbv12I	GWGCWC	1 cut(s)	627
BbvI	GCAGC	1 cut(s)	463
BccI	CCATC	1 cut(s)	311
BceAI	ACGGC	1 cut(s)	641
BciT130I	CCWGG	1 cut(s)	297
BclI	TGATCA	1 cut(s)	18
BcoDI	GTCTC	3 cut(s)	172, 400, 643
BcuI	ACTAGT	2 cut(s)	34, 563
BfaI	CTAG	5 cut(s)	35, 90, 429, 467, 564
BfmI	CTRYAG	1 cut(s)	695
BisI	GCNGC	1 cut(s)	452
BlsI	GCNGC	1 cut(s)	453
Bme1390I	CCNGG	1 cut(s)	297
BmeT110I	CYCGRG	1 cut(s)	388
BmgBI	CACGTC	1 cut(s)	588
BmiI	GGNNCC	2 cut(s)	201, 357
BmrFI	CCNGG	1 cut(s)	297
BmrI	ACTGGG	1 cut(s)	73
BmsI	GCATC	2 cut(s)	118, 328
BmuI	ACTGGG	1 cut(s)	73
BoxI	GACNNNNGTC	1 cut(s)	566
BpiI	GAAGAC	1 cut(s)	467
BsaAI	YACGTR	1 cut(s)	681
BsaI	GGTCTC	1 cut(s)	172
BsaJI	CCNNGG	1 cut(s)	359
Bsc4I	CCNNNNNNNGG	3 cut(s)	196, 213, 613
Bse1I	ACTGG	1 cut(s)	68
Bse3DI	GCAATG	1 cut(s)	21
BseBI	CCWGG	1 cut(s)	297
BseDI	CCNNGG	1 cut(s)	359
BseLI	CCNNNNNNNGG	3 cut(s)	196, 213, 613
BseMI	GCAATG	1 cut(s)	21
BseNI	ACTGG	1 cut(s)	68
BseSI	GKGCMC	1 cut(s)	627
BseXI	GCAGC	1 cut(s)	463
BseYI	CCCAGC	1 cut(s)	329
BshFI	GGCC	1 cut(s)	584
BshNI	GGYRCC	1 cut(s)	355
BsiHKAI	GWGCWC	1 cut(s)	627
BsiHKCI	CYCGRG	1 cut(s)	388
BslI	CCNNNNNNNGG	3 cut(s)	196, 213, 613
BsmAI	GTCTC	3 cut(s)	172, 400, 643
BsnI	GGCC	1 cut(s)	584
Bso31I	GGTCTC	1 cut(s)	172
BsoBI	CYCGRG	1 cut(s)	388
Bsp1286I	GDGCHC	1 cut(s)	627
Bsp143I	GATC	3 cut(s)	18, 199, 260
BspACI	CCGC	1 cut(s)	341
BspANI	GGCC	1 cut(s)	584
BspLI	GGNNCC	2 cut(s)	201, 357
BspPI	GGATC	2 cut(s)	194, 207
BspQI	GCTCTTC	1 cut(s)	279
BspT107I	GGYRCC	1 cut(s)	355
BspTNI	GGTCTC	1 cut(s)	172
BsrDI	GCAATG	1 cut(s)	21
BsrI	ACTGG	1 cut(s)	68
BssECI	CCNNGG	1 cut(s)	359
BssMI	GATC	3 cut(s)	18, 199, 260
BssT1I	CCWWGG	1 cut(s)	359
Bst2UI	CCWGG	1 cut(s)	297
Bst4CI	ACNGT	2 cut(s)	490, 699
Bst6I	CTCTTC	1 cut(s)	279
BstBAI	YACGTR	1 cut(s)	681
BstKTI	GATC	3 cut(s)	21, 202, 263
BstMAI	GTCTC	3 cut(s)	172, 400, 643
BstMBI	GATC	3 cut(s)	18, 199, 260
BstMWI	GCNNNNNNNGC	1 cut(s)	65
BstNI	CCWGG	1 cut(s)	297
BstNSI	RCATGY	1 cut(s)	170
BstPAI	GACNNNNGTC	1 cut(s)	566
BstSCI	CCNGG	1 cut(s)	295
BstSFI	CTRYAG	1 cut(s)	695
BstSLI	GKGCMC	1 cut(s)	627
BstV1I	GCAGC	1 cut(s)	463
BstV2I	GAAGAC	1 cut(s)	467
BstX2I	RGATCY	1 cut(s)	199
BstXI	CCANNNNNNTGG	1 cut(s)	54
BstYI	RGATCY	1 cut(s)	199
BsuRI	GGCC	1 cut(s)	584
BtrI	CACGTC	1 cut(s)	588
CseI	GACGC	1 cut(s)	278
Csp6I	GTAC	5 cut(s)	347, 356, 385, 425, 682
CspCI	CAANNNNNGTGG	4 cut(s)	18, 53, 514, 549
CviAII	CATG	3 cut(s)	74, 167, 196
CviQI	GTAC	5 cut(s)	347, 356, 385, 425, 682
DpnI	GATC	3 cut(s)	20, 201, 262
DpnII	GATC	3 cut(s)	18, 199, 260
Eam1104I	CTCTTC	1 cut(s)	279
EarI	CTCTTC	1 cut(s)	279
Eco130I	CCWWGG	1 cut(s)	359
Eco31I	GGTCTC	1 cut(s)	172
Eco57I	CTGAAG	2 cut(s)	102, 260
Eco88I	CYCGRG	1 cut(s)	388
EcoRI	GAATTC	1 cut(s)	521
EcoRII	CCWGG	1 cut(s)	295
EcoT14I	CCWWGG	1 cut(s)	359
ErhI	CCWWGG	1 cut(s)	359
FaeI	CATG	3 cut(s)	77, 170, 199
FatI	CATG	3 cut(s)	73, 166, 195
FbaI	TGATCA	1 cut(s)	18
Fnu4HI	GCNGC	1 cut(s)	452
Fsp4HI	GCNGC	1 cut(s)	452
FspBI	CTAG	5 cut(s)	35, 90, 429, 467, 564
GluI	GCNGC	1 cut(s)	452
GsaI	CCCAGC	1 cut(s)	333
HaeIII	GGCC	1 cut(s)	584
HgaI	GACGC	1 cut(s)	278
Hin1II	CATG	3 cut(s)	77, 170, 199
HincII	GTYRAC	1 cut(s)	661
HindII	GTYRAC	1 cut(s)	661
HinfI	GANTC	1 cut(s)	463
HpaI	GTTAAC	1 cut(s)	661
HphI	GGTGA	4 cut(s)	254, 404, 589, 596
Hpy166II	GTNNAC	2 cut(s)	625, 661
Hpy188III	TCNNGA	3 cut(s)	223, 512, 689
Hpy8I	GTNNAC	2 cut(s)	625, 661
HpyAV	CCTTC	2 cut(s)	346, 574
HpyCH4III	ACNGT	2 cut(s)	490, 699
HpyCH4IV	ACGT	3 cut(s)	587, 621, 680
HpyCH4V	TGCA	3 cut(s)	26, 372, 625
HpyF10VI	GCNNNNNNNGC	1 cut(s)	65
HpySE526I	ACGT	3 cut(s)	587, 621, 680
Hsp92II	CATG	3 cut(s)	77, 170, 199
KpnI	GGTACC	1 cut(s)	359
Ksp22I	TGATCA	1 cut(s)	18
KspAI	GTTAAC	1 cut(s)	661
Kzo9I	GATC	3 cut(s)	18, 199, 260
LguI	GCTCTTC	1 cut(s)	279
LpnPI	CCDG	8 cut(s)	49, 81, 208, 282, 309, 315, 440, 620
Lsp1109I	GCAGC	1 cut(s)	463
LweI	GCATC	2 cut(s)	118, 328
MaeI	CTAG	5 cut(s)	35, 90, 429, 467, 564
MaeII	ACGT	3 cut(s)	587, 621, 680
MaeIII	GTNAC	2 cut(s)	397, 494
MalI	GATC	3 cut(s)	20, 201, 262
MboI	GATC	3 cut(s)	18, 199, 260
MboII	GAAGA	2 cut(s)	266, 472
MflI	RGATCY	1 cut(s)	199
MhlI	GDGCHC	1 cut(s)	627
MluCI	AATT	8 cut(s)	12, 105, 245, 285, 380, 417, 434, 521
MlyI	GAGTC	1 cut(s)	457
MnlI	CCTC	6 cut(s)	141, 155, 213, 337, 568, 686
MseI	TTAA	4 cut(s)	50, 284, 420, 660
MslI	CAYNNNNRTG	1 cut(s)	52
MspA1I	CMGCKG	1 cut(s)	266
MspR9I	CCNGG	1 cut(s)	297
MvaI	CCWGG	1 cut(s)	297
MwoI	GCNNNNNNNGC	1 cut(s)	65
NdeII	GATC	3 cut(s)	18, 199, 260
NlaIII	CATG	3 cut(s)	77, 170, 199
NlaIV	GGNNCC	2 cut(s)	201, 357
NspI	RCATGY	1 cut(s)	170
PciSI	GCTCTTC	1 cut(s)	279
PflMI	CCANNNNNTGG	1 cut(s)	213
PfoI	TCCNGGA	1 cut(s)	295
PkrI	GCNGC	1 cut(s)	453
PleI	GAGTC	1 cut(s)	457
PpsI	GAGTC	1 cut(s)	457
Ppu21I	YACGTR	1 cut(s)	681
PshAI	GACNNNNGTC	1 cut(s)	566
PshBI	ATTAAT	2 cut(s)	284, 420
Psp6I	CCWGG	1 cut(s)	295
PspFI	CCCAGC	1 cut(s)	329
PspGI	CCWGG	1 cut(s)	295
PspN4I	GGNNCC	2 cut(s)	201, 357
PsuI	RGATCY	1 cut(s)	199
PvuII	CAGCTG	1 cut(s)	266
RsaI	GTAC	5 cut(s)	348, 357, 386, 426, 683
RsaNI	GTAC	5 cut(s)	347, 356, 385, 425, 682
RseI	CAYNNNNRTG	1 cut(s)	52
SapI	GCTCTTC	1 cut(s)	279
SaqAI	TTAA	4 cut(s)	50, 284, 420, 660
SatI	GCNGC	1 cut(s)	452
Sau3AI	GATC	3 cut(s)	18, 199, 260
SchI	GAGTC	1 cut(s)	457
ScrFI	CCNGG	1 cut(s)	297
SduI	GDGCHC	1 cut(s)	627
SfaNI	GCATC	2 cut(s)	118, 328
SfcI	CTRYAG	1 cut(s)	695
SmiMI	CAYNNNNRTG	1 cut(s)	52
SpeI	ACTAGT	2 cut(s)	34, 563
Sse9I	AATT	8 cut(s)	12, 105, 245, 285, 380, 417, 434, 521
SsiI	CCGC	1 cut(s)	341
SspMI	CTAG	5 cut(s)	35, 90, 429, 467, 564
StyD4I	CCNGG	1 cut(s)	295
StyI	CCWWGG	1 cut(s)	359
TaaI	ACNGT	2 cut(s)	490, 699
TaiI	ACGT	3 cut(s)	590, 624, 683
TaqI	TCGA	1 cut(s)	690
TasI	AATT	8 cut(s)	12, 105, 245, 285, 380, 417, 434, 521
TatI	WGTACW	1 cut(s)	384
Tru1I	TTAA	4 cut(s)	50, 284, 420, 660
Tru9I	TTAA	4 cut(s)	50, 284, 420, 660
TseI	GCWGC	1 cut(s)	451
TspDTI	ATGAA	2 cut(s)	62, 225
TspGWI	ACGGA	2 cut(s)	629, 642
Van91I	CCANNNNNTGG	1 cut(s)	213
VneI	GTGCAC	1 cut(s)	623
VspI	ATTAAT	2 cut(s)	284, 420
XapI	RAATTY	2 cut(s)	245, 521
XceI	RCATGY	1 cut(s)	170
XspI	CTAG	5 cut(s)	35, 90, 429, 467, 564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.