Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0006136

Physical Location & Seq

Genomic Coordinates Reverse (-)

42005038 .. 42006664

Gene Structure 1627 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034395

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGAAGCCTCAATCCCATCAATATCATGATTTCCCCAATTCGAAATTGAAGCCTCAATCAAGCAACGGAGCAAGCTCAGATTCTTCTGCATCCAATTTGTTCATCTCCGACGAACTAGCTATCCAAAGTTTTGGGCTTTTCGCAAGAAATCTGATGGGCAGAGTGCAAGATTTAACCTTTGAACAATTACGCAAAGTTTTGATCTTACAATACTGCTTCACAAGTAGTGCATACCATTTCCTAGACCCTCTCGGCCCAACTGAGATCAACAAAGTCAGGCTCATAGTTCGGAAGCCTCACCTTGCAACTCTTCCTAATCTCACCTTTTATTATGTCGATATCGAAGAGCCTGAGAAGGCAGACGTCCACAAATGGTTTTCTTCAAGCTCAAGCAATCCAAAGAGGCGCATTTCTGCCCCTCCCCGCCGGGTACACGTGGTGGTTCGAGGCGACGGTGATGCCCACGAGCTCGTGGTGGACTTGGCATGGACACCAACATTATCATATCCAACTACGTCTACACCGAGGAGGGTCACCATTCTTGTGGATGTTGATTTGATGAAGATCACAATGTACACTGATAGGTTCATAGCCCCTTTGCCTAAAGCTGAAGGCACTGATTTCCAAACCCCAAATGGGAAGTCAAATTATGATCATTGCAACAAAACAAGTAGTGTATTTTCCATTAAAGGCCACAAGGTGAAGTGGGCACACTGGATTTTTCATGTTGGGTTCAAGGCTAGAGCACGAATGGTAATTTCAACAGGTTCAGTATTTGATGCCACAAAGAAGTACAGGAGGGTGCTATATAGAGGACGTGTCTATGAGACTTTTGTGCCTTACATGGATCCTCCCAATGAATGGTATGTCAGAACTTTTATGGATATAGGTGAATTTGGGTTTGGGAGATCAGCTGACGCTCTTCAGCCATTAATGATTGTCCTGGAAATGCTGAATATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005623 GO:0007154 GO:0007165 GO:0008131 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009888 GO:0009987 GO:0010033 GO:0010035 GO:0010087 GO:0010089 GO:0010941 GO:0016491 GO:0016638 GO:0016641 GO:0023052 GO:0030312 GO:0032502 GO:0032870 GO:0042221 GO:0043067 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0052597 GO:0055114 GO:0065007 GO:0070887 GO:0071229 GO:0071241 GO:0071310 GO:0071395 GO:0071495 GO:0071944 GO:0090059 GO:0097184 GO:0097185 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00260 ko00350 ko00360 ko00410 ko00950 ko00960 ko01100 ko01110 map00260 map00350 map00360 map00410 map00950 map00960 map01100 map01110

Pfam Domains

Protein Families

Cu_amine_oxid Cu_amine_oxidN2 Cu_amine_oxidN3

Protein Analysis

321

Amino Acids

36.62

Weight (kDa)

9.41

Isoelectric Point (pI)

41.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_amine_oxidN2	PF02727	79 - 165	1.1e-15	Copper amine oxidase, N2 domain
Cu_amine_oxid	PF01179	223 - 311	4.9e-19	Copper amine oxidase, enzyme domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14940
fragaria_vesca	FvH4_4g15350 FvH4_4g15390
malus_domestica	MD13G1191800.v1.1
prunus_persica	Prupe.1G012100_v2.0.a1 Prupe.1G012100_v2.0.a1
pyrus_communis	pycom13g16440
rosa_chinensis	RchiOBHm_Chr4g0416411 RchiOBHm_Chr5g0045871
rosa_laevigata	RLG00000007984 RLG00000034395
rosa_multiflora	Rmu_sc0001488.1_g000020
rosa_roxburghii	Rroxscaffold_1G00035130 Rroxscaffold_1G00035220 Rroxscaffold_5G00360240
rosa_rugosa	Rorug04G0141600 Rorug04G0141700 Rorug05G0226600
rosa_samantha	Rh4AG204000 Rh4BG201400 Rh4CG215200 Rh4DG201300 Rh5BG316100 Rh5DG326400
rosa_wichuraiana	Rw0G018920 Rw4G017270 Rw5G028820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	366
AccB7I	CCANNNNNTGG	1 cut(s)	861
AccI	GTMKAC	1 cut(s)	518
AciI	CCGC	1 cut(s)	424
AclWI	GGATC	2 cut(s)	842, 855
AcsI	RAATTY	1 cut(s)	893
AcuI	CTGAAG	2 cut(s)	630, 908
AcvI	CACGTG	1 cut(s)	436
AcyI	GRCGYC	1 cut(s)	363
AdeI	CACNNNGTG	2 cut(s)	439, 700
AfaI	GTAC	3 cut(s)	432, 575, 794
AfiI	CCNNNNNNNGG	2 cut(s)	636, 861
AflIII	ACRYGT	2 cut(s)	433, 817
AgsI	TTSAA	5 cut(s)	49, 182, 384, 736, 762
AjiI	CACGTC	1 cut(s)	818
AjnI	CCWGG	1 cut(s)	942
AjuI	GAANNNNNNNTTGG	2 cut(s)	885, 917
AloI	GAACNNNNNNTCC	2 cut(s)	105, 137
AluBI	AGCT	6 cut(s)	75, 119, 387, 469, 608, 914
AluI	AGCT	6 cut(s)	75, 119, 387, 469, 608, 914
Alw21I	GWGCWC	2 cut(s)	471, 748
Alw26I	GTCTC	1 cut(s)	821
AlwI	GGATC	2 cut(s)	842, 855
AoxI	GGCC	2 cut(s)	253, 691
ApoI	RAATTY	1 cut(s)	893
ArsI	GACNNNNNNTTYG	2 cut(s)	626, 658
AseI	ATTAAT	1 cut(s)	932
AspLEI	GCGC	1 cut(s)	408
AspS9I	GGNCC	1 cut(s)	254
AsuC2I	CCSGG	1 cut(s)	428
AsuHPI	GGTGA	6 cut(s)	290, 313, 467, 526, 712, 902
AsuII	TTCGAA	1 cut(s)	41
BaeGI	GKGCMC	1 cut(s)	712
BamHI	GGATCC	1 cut(s)	847
BanII	GRGCYC	1 cut(s)	471
BauI	CACGAG	2 cut(s)	464, 470
BbrPI	CACGTG	1 cut(s)	436
Bbv12I	GWGCWC	2 cut(s)	471, 748
BccI	CCATC	2 cut(s)	24, 148
BcgI	CGANNNNNNTGC	2 cut(s)	440, 474
BciT130I	CCWGG	1 cut(s)	944
BclI	TGATCA	1 cut(s)	652
BcnI	CCSGG	1 cut(s)	428
BcoDI	GTCTC	1 cut(s)	821
BfaI	CTAG	3 cut(s)	116, 242, 741
Bme1390I	CCNGG	2 cut(s)	428, 944
BmgBI	CACGTC	1 cut(s)	818
BmgT120I	GGNCC	1 cut(s)	254
BmiI	GGNNCC	1 cut(s)	849
BmrFI	CCNGG	2 cut(s)	428, 944
BmsI	GCATC	3 cut(s)	98, 448, 769
Bpu14I	TTCGAA	1 cut(s)	41
BpuEI	CTTGAG	1 cut(s)	373
BpuMI	CCSGG	1 cut(s)	428
BsaAI	YACGTR	1 cut(s)	436
BsaBI	GATNNNNATC	1 cut(s)	563
BsaHI	GRCGYC	1 cut(s)	363
BsaJI	CCNNGG	1 cut(s)	524
Bsc4I	CCNNNNNNNGG	2 cut(s)	636, 861
Bse1I	ACTGG	1 cut(s)	719
Bse3DI	GCAATG	1 cut(s)	655
Bse8I	GATNNNNATC	1 cut(s)	563
BseBI	CCWGG	1 cut(s)	944
BseDI	CCNNGG	1 cut(s)	524
BseGI	GGATG	2 cut(s)	89, 553
BseJI	GATNNNNATC	1 cut(s)	563
BseLI	CCNNNNNNNGG	2 cut(s)	636, 861
BseMI	GCAATG	1 cut(s)	655
BseMII	CTCAG	3 cut(s)	90, 252, 342
BseNI	ACTGG	1 cut(s)	719
BseRI	GAGGAG	1 cut(s)	541
BseSI	GKGCMC	1 cut(s)	712
BshFI	GGCC	2 cut(s)	255, 693
BsiHKAI	GWGCWC	2 cut(s)	471, 748
BsiSI	CCGG	1 cut(s)	427
BslI	CCNNNNNNNGG	2 cut(s)	636, 861
BsmAI	GTCTC	1 cut(s)	821
BsnI	GGCC	2 cut(s)	255, 693
Bsp119I	TTCGAA	1 cut(s)	41
Bsp1286I	GDGCHC	3 cut(s)	471, 712, 748
Bsp1407I	TGTACA	1 cut(s)	573
Bsp143I	GATC	6 cut(s)	201, 264, 564, 652, 847, 908
BspACI	CCGC	1 cut(s)	424
BspANI	GGCC	2 cut(s)	255, 693
BspCNI	CTCAG	3 cut(s)	89, 253, 343
BspHI	TCATGA	1 cut(s)	25
BspLI	GGNNCC	1 cut(s)	849
BspPI	GGATC	2 cut(s)	842, 855
BspQI	GCTCTTC	2 cut(s)	339, 927
BspT104I	TTCGAA	1 cut(s)	41
BsrDI	GCAATG	1 cut(s)	655
BsrGI	TGTACA	1 cut(s)	573
BsrI	ACTGG	1 cut(s)	719
BssECI	CCNNGG	1 cut(s)	524
BssMI	GATC	6 cut(s)	201, 264, 564, 652, 847, 908
BssNI	GRCGYC	1 cut(s)	363
BssSI	CACGAG	2 cut(s)	464, 470
Bst2BI	CACGAG	2 cut(s)	464, 470
Bst2UI	CCWGG	1 cut(s)	944
Bst4CI	ACNGT	1 cut(s)	455
Bst6I	CTCTTC	3 cut(s)	315, 339, 927
BstACI	GRCGYC	1 cut(s)	363
BstAUI	TGTACA	1 cut(s)	573
BstBAI	YACGTR	1 cut(s)	436
BstBI	TTCGAA	1 cut(s)	41
BstC8I	GCNNGC	1 cut(s)	73
BstDEI	CTNAG	3 cut(s)	76, 261, 351
BstEII	GGTNACC	1 cut(s)	532
BstF5I	GGATG	2 cut(s)	89, 553
BstHHI	GCGC	1 cut(s)	408
BstKTI	GATC	6 cut(s)	204, 267, 567, 655, 850, 911
BstMAI	GTCTC	1 cut(s)	821
BstMBI	GATC	6 cut(s)	201, 264, 564, 652, 847, 908
BstNI	CCWGG	1 cut(s)	944
BstPI	GGTNACC	1 cut(s)	532
BstSCI	CCNGG	2 cut(s)	426, 942
BstSLI	GKGCMC	1 cut(s)	712
BstX2I	RGATCY	1 cut(s)	847
BstXI	CCANNNNNNTGG	2 cut(s)	131, 544
BstYI	RGATCY	1 cut(s)	847
BsuRI	GGCC	2 cut(s)	255, 693
BtrI	CACGTC	1 cut(s)	818
BtsCI	GGATG	2 cut(s)	89, 553
BtsIMutI	CAGTG	3 cut(s)	576, 615, 712
Cac8I	GCNNGC	1 cut(s)	73
CciI	TCATGA	1 cut(s)	25
CfoI	GCGC	1 cut(s)	408
Cfr13I	GGNCC	1 cut(s)	254
CseI	GACGC	1 cut(s)	926
Csp6I	GTAC	3 cut(s)	431, 574, 793
CviAII	CATG	4 cut(s)	26, 486, 725, 844
CviQI	GTAC	3 cut(s)	431, 574, 793
DdeI	CTNAG	3 cut(s)	76, 261, 351
DpnI	GATC	6 cut(s)	203, 266, 566, 654, 849, 910
DpnII	GATC	6 cut(s)	201, 264, 564, 652, 847, 908
DraIII	CACNNNGTG	2 cut(s)	439, 700
Eam1104I	CTCTTC	3 cut(s)	315, 339, 927
EarI	CTCTTC	3 cut(s)	315, 339, 927
Ecl136II	GAGCTC	1 cut(s)	469
Eco24I	GRGCYC	1 cut(s)	471
Eco32I	GATATC	1 cut(s)	340
Eco53kI	GAGCTC	1 cut(s)	469
Eco57I	CTGAAG	2 cut(s)	630, 908
Eco72I	CACGTG	1 cut(s)	436
Eco91I	GGTNACC	1 cut(s)	532
EcoICRI	GAGCTC	1 cut(s)	469
EcoO65I	GGTNACC	1 cut(s)	532
EcoRII	CCWGG	1 cut(s)	942
EcoRV	GATATC	1 cut(s)	340
EcoT38I	GRGCYC	1 cut(s)	471
FaeI	CATG	4 cut(s)	29, 489, 728, 847
FatI	CATG	4 cut(s)	25, 485, 724, 843
FauI	CCCGC	1 cut(s)	431
FbaI	TGATCA	1 cut(s)	652
FblI	GTMKAC	1 cut(s)	518
FokI	GGATG	2 cut(s)	76, 560
FriOI	GRGCYC	1 cut(s)	471
FspBI	CTAG	3 cut(s)	116, 242, 741
GlaI	GCGC	1 cut(s)	407
HaeIII	GGCC	2 cut(s)	255, 693
HapII	CCGG	1 cut(s)	427
HgaI	GACGC	1 cut(s)	926
HhaI	GCGC	1 cut(s)	408
Hin1I	GRCGYC	1 cut(s)	363
Hin1II	CATG	4 cut(s)	29, 489, 728, 847
Hin6I	GCGC	1 cut(s)	406
HinP1I	GCGC	1 cut(s)	406
HinfI	GANTC	1 cut(s)	80
HpaII	CCGG	1 cut(s)	427
HphI	GGTGA	6 cut(s)	290, 313, 467, 526, 712, 902
Hpy166II	GTNNAC	5 cut(s)	367, 433, 478, 519, 576
Hpy188I	TCNGA	5 cut(s)	79, 109, 153, 291, 872
Hpy188III	TCNNGA	1 cut(s)	26
Hpy8I	GTNNAC	5 cut(s)	367, 433, 478, 519, 576
Hpy99I	CGWCG	2 cut(s)	113, 455
HpyAV	CCTTC	2 cut(s)	349, 605
HpyCH4III	ACNGT	1 cut(s)	455
HpyCH4IV	ACGT	4 cut(s)	363, 435, 515, 817
HpyCH4V	TGCA	5 cut(s)	89, 166, 230, 305, 660
HpyF3I	CTNAG	3 cut(s)	76, 261, 351
HpySE526I	ACGT	4 cut(s)	363, 435, 515, 817
Hsp92I	GRCGYC	1 cut(s)	363
Hsp92II	CATG	4 cut(s)	29, 489, 728, 847
HspAI	GCGC	1 cut(s)	406
Ksp22I	TGATCA	1 cut(s)	652
Kzo9I	GATC	6 cut(s)	201, 264, 564, 652, 847, 908
LguI	GCTCTTC	2 cut(s)	339, 927
LmnI	GCTCC	1 cut(s)	68
LpnPI	CCDG	8 cut(s)	262, 363, 440, 700, 750, 781, 929, 956
LweI	GCATC	3 cut(s)	98, 448, 769
MaeI	CTAG	3 cut(s)	116, 242, 741
MaeII	ACGT	4 cut(s)	363, 435, 515, 817
MaeIII	GTNAC	1 cut(s)	532
MalI	GATC	6 cut(s)	203, 266, 566, 654, 849, 910
MboI	GATC	6 cut(s)	201, 264, 564, 652, 847, 908
MboII	GAAGA	6 cut(s)	75, 302, 356, 372, 574, 914
MflI	RGATCY	1 cut(s)	847
MhlI	GDGCHC	3 cut(s)	471, 712, 748
MluCI	AATT	7 cut(s)	37, 44, 94, 185, 646, 756, 893
MmeI	TCCRAC	2 cut(s)	132, 533
MseI	TTAA	3 cut(s)	173, 687, 932
MslI	CAYNNNNRTG	1 cut(s)	542
MspA1I	CMGCKG	1 cut(s)	914
MspI	CCGG	1 cut(s)	427
MspR9I	CCNGG	2 cut(s)	428, 944
MvaI	CCWGG	1 cut(s)	944
NciI	CCSGG	1 cut(s)	428
NdeII	GATC	6 cut(s)	201, 264, 564, 652, 847, 908
NlaIII	CATG	4 cut(s)	29, 489, 728, 847
NlaIV	GGNNCC	1 cut(s)	849
NmeAIII	GCCGAG	1 cut(s)	231
NmuCI	GTSAC	1 cut(s)	532
NspV	TTCGAA	1 cut(s)	41
PagI	TCATGA	1 cut(s)	25
PciSI	GCTCTTC	2 cut(s)	339, 927
PcsI	WCGNNNNNNNCGW	1 cut(s)	521
PfeI	GAWTC	1 cut(s)	80
PflMI	CCANNNNNTGG	1 cut(s)	861
PfoI	TCCNGGA	1 cut(s)	942
PmaCI	CACGTG	1 cut(s)	436
PmlI	CACGTG	1 cut(s)	436
Ppu21I	YACGTR	1 cut(s)	436
PshBI	ATTAAT	1 cut(s)	932
Psp124BI	GAGCTC	1 cut(s)	471
Psp6I	CCWGG	1 cut(s)	942
PspCI	CACGTG	1 cut(s)	436
PspEI	GGTNACC	1 cut(s)	532
PspGI	CCWGG	1 cut(s)	942
PspN4I	GGNNCC	1 cut(s)	849
PspPI	GGNCC	1 cut(s)	254
PsuI	RGATCY	1 cut(s)	847
PvuII	CAGCTG	1 cut(s)	914
RsaI	GTAC	3 cut(s)	432, 575, 794
RsaNI	GTAC	3 cut(s)	431, 574, 793
RseI	CAYNNNNRTG	1 cut(s)	542
SacI	GAGCTC	1 cut(s)	471
SapI	GCTCTTC	2 cut(s)	339, 927
SaqAI	TTAA	3 cut(s)	173, 687, 932
Sau3AI	GATC	6 cut(s)	201, 264, 564, 652, 847, 908
Sau96I	GGNCC	1 cut(s)	254
ScrFI	CCNGG	2 cut(s)	428, 944
SduI	GDGCHC	3 cut(s)	471, 712, 748
SfaNI	GCATC	3 cut(s)	98, 448, 769
SfuI	TTCGAA	1 cut(s)	41
SmiMI	CAYNNNNRTG	1 cut(s)	542
SmlI	CTYRAG	1 cut(s)	388
SmoI	CTYRAG	1 cut(s)	388
Sse9I	AATT	7 cut(s)	37, 44, 94, 185, 646, 756, 893
SsiI	CCGC	1 cut(s)	424
SspMI	CTAG	3 cut(s)	116, 242, 741
SstI	GAGCTC	1 cut(s)	471
StyD4I	CCNGG	2 cut(s)	426, 942
TaaI	ACNGT	1 cut(s)	455
TaiI	ACGT	4 cut(s)	366, 438, 518, 820
TaqI	TCGA	4 cut(s)	41, 336, 342, 445
TasI	AATT	7 cut(s)	37, 44, 94, 185, 646, 756, 893
TatI	WGTACW	2 cut(s)	573, 792
TfiI	GAWTC	1 cut(s)	80
Tru1I	TTAA	3 cut(s)	173, 687, 932
Tru9I	TTAA	3 cut(s)	173, 687, 932
TscAI	CASTG	3 cut(s)	583, 622, 719
TseFI	GTSAC	1 cut(s)	532
Tsp45I	GTSAC	1 cut(s)	532
TspDTI	ATGAA	6 cut(s)	17, 91, 575, 577, 713, 873
TspGWI	ACGGA	1 cut(s)	81
TspRI	CASTG	3 cut(s)	583, 622, 719
Van91I	CCANNNNNTGG	1 cut(s)	861
VspI	ATTAAT	1 cut(s)	932
XapI	RAATTY	1 cut(s)	893
XcmI	CCANNNNNNNNNTGG	1 cut(s)	632
XmiI	GTMKAC	1 cut(s)	518
XspI	CTAG	3 cut(s)	116, 242, 741
ZraI	GACGTC	1 cut(s)	364

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.