Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0006136

Physical Location & Seq

Genomic Coordinates Reverse (-)

23479447 .. 23480205

Gene Structure 759 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0226600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGATTTTTTCCAAACCCCAAGCAACAAGAACCAATTCCATCACAAGAAAAAGAGGCTAACCCAAGACCAAGTGAAGCTTCTGGAGAGAAGCTTCAGCTCCGACAACAAGCTCGAGCCAGACCGCAAGCTCCTGCTGGCCAAACAGCTCGGAATCCCGGCCAGACAGGTTGCCATTTGGTACCAAAACAAGCGAGCGCGGTGGAAGACGCAGAGCCTCGAGCTCGGCTACAAAGCGATTCAAGTGCAGCTGGAGACTGCATTAGCGGAAAAGAGGAAACTGGAGAAAGATGTTGAGAGGCTTAAAGGAGAGTTAAACAGTGCTCATGAACTGTTGTTGGCTTTGAATAACCAAAGACAAGTAGGTGGTGATAATCATCCTGTGGTTTGCTCAGTGTTTTCAGCTTCTTGTGATCAAGAGGGTGCTGCTAGCTCTAGTTTGCAGCTTGGGGATCATGTGGTTAATCATGAGGTTAAGGAGTTTGAGGAGCTCTATGCTTGTTTGATTGGCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005623 GO:0007154 GO:0007165 GO:0008131 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009888 GO:0009987 GO:0010033 GO:0010035 GO:0010087 GO:0010089 GO:0010941 GO:0016491 GO:0016638 GO:0016641 GO:0023052 GO:0030312 GO:0032502 GO:0032870 GO:0042221 GO:0043067 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0052597 GO:0055114 GO:0065007 GO:0070887 GO:0071229 GO:0071241 GO:0071310 GO:0071395 GO:0071495 GO:0071944 GO:0090059 GO:0097184 GO:0097185 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00260 ko00350 ko00360 ko00410 ko00950 ko00960 ko01100 ko01110 map00260 map00350 map00360 map00410 map00950 map00960 map01100 map01110

Pfam Domains

Protein Families

Cu_amine_oxid Cu_amine_oxidN2 Cu_amine_oxidN3

Protein Analysis

171

Amino Acids

19.53

Weight (kDa)

8.73

Isoelectric Point (pI)

44.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	16 - 69	2.3e-15	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0006136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14940
fragaria_vesca	FvH4_4g15350 FvH4_4g15390
malus_domestica	MD13G1191800.v1.1
prunus_persica	Prupe.1G012100_v2.0.a1 Prupe.1G012100_v2.0.a1
pyrus_communis	pycom13g16440
rosa_chinensis	RchiOBHm_Chr4g0416411 RchiOBHm_Chr5g0045871
rosa_laevigata	RLG00000007984 RLG00000034395
rosa_multiflora	Rmu_sc0001488.1_g000020
rosa_roxburghii	Rroxscaffold_1G00035130 Rroxscaffold_1G00035220 Rroxscaffold_5G00360240
rosa_rugosa	Rorug04G0141600 Rorug04G0141700 Rorug05G0226600
rosa_samantha	Rh4AG204000 Rh4BG201400 Rh4CG215200 Rh4DG201300 Rh5BG316100 Rh5DG326400
rosa_wichuraiana	Rw0G018920 Rw4G017270 Rw5G028820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	180
AccB1I	GGYRCC	1 cut(s)	180
AccII	CGCG	1 cut(s)	199
AciI	CCGC	3 cut(s)	124, 199, 266
AclWI	GGATC	1 cut(s)	459
AcoI	YGGCCR	2 cut(s)	138, 159
AcuI	CTGAAG	1 cut(s)	79
AfaI	GTAC	1 cut(s)	182
AgsI	TTSAA	2 cut(s)	242, 346
AjuI	GAANNNNNNNTTGG	2 cut(s)	63, 95
Alw21I	GWGCWC	3 cut(s)	225, 325, 492
Alw26I	GTCTC	1 cut(s)	248
AlwI	GGATC	1 cut(s)	459
Ama87I	CYCGRG	2 cut(s)	113, 218
AoxI	GGCC	2 cut(s)	138, 159
ApeKI	GCWGC	3 cut(s)	247, 425, 442
Asp700I	GAANNNNTTC	1 cut(s)	35
Asp718I	GGTACC	1 cut(s)	180
AspLEI	GCGC	1 cut(s)	199
AsuC2I	CCSGG	1 cut(s)	158
AsuHPI	GGTGA	1 cut(s)	380
AsuNHI	GCTAGC	1 cut(s)	428
AvaI	CYCGRG	2 cut(s)	113, 218
BalI	TGGCCA	1 cut(s)	140
BanI	GGYRCC	1 cut(s)	180
BanII	GRGCYC	2 cut(s)	225, 492
BbsI	GAAGAC	1 cut(s)	212
Bbv12I	GWGCWC	3 cut(s)	225, 325, 492
BbvI	GCAGC	3 cut(s)	259, 412, 454
BccI	CCATC	1 cut(s)	48
BcgI	CGANNNNNNTGC	2 cut(s)	226, 260
BclI	TGATCA	1 cut(s)	412
BcnI	CCSGG	1 cut(s)	158
BcoDI	GTCTC	1 cut(s)	248
BfaI	CTAG	2 cut(s)	429, 435
BisI	GCNGC	3 cut(s)	248, 426, 443
BlsI	GCNGC	3 cut(s)	249, 427, 444
Bme1390I	CCNGG	1 cut(s)	158
BmeT110I	CYCGRG	2 cut(s)	113, 218
BmiI	GGNNCC	1 cut(s)	182
BmrFI	CCNGG	1 cut(s)	158
BmtI	GCTAGC	1 cut(s)	432
BpiI	GAAGAC	1 cut(s)	212
BpmI	CTGGAG	3 cut(s)	104, 272, 302
BpuMI	CCSGG	1 cut(s)	158
BsaBI	GATNNNNATC	1 cut(s)	375
Bse1I	ACTGG	1 cut(s)	285
Bse8I	GATNNNNATC	1 cut(s)	375
BseGI	GGATG	1 cut(s)	376
BseJI	GATNNNNATC	1 cut(s)	375
BseMII	CTCAG	1 cut(s)	405
BseNI	ACTGG	1 cut(s)	285
BseRI	GAGGAG	1 cut(s)	500
BseXI	GCAGC	3 cut(s)	259, 412, 454
BsgI	GTGCAG	1 cut(s)	266
Bsh1236I	CGCG	1 cut(s)	199
BshFI	GGCC	2 cut(s)	140, 161
BshNI	GGYRCC	1 cut(s)	180
BsiHKAI	GWGCWC	3 cut(s)	225, 325, 492
BsiHKCI	CYCGRG	2 cut(s)	113, 218
BsiSI	CCGG	1 cut(s)	158
BsmAI	GTCTC	1 cut(s)	248
BsnI	GGCC	2 cut(s)	140, 161
BsoBI	CYCGRG	2 cut(s)	113, 218
Bsp1286I	GDGCHC	3 cut(s)	225, 325, 492
Bsp143I	GATC	2 cut(s)	412, 451
BspACI	CCGC	3 cut(s)	124, 199, 266
BspANI	GGCC	2 cut(s)	140, 161
BspCNI	CTCAG	1 cut(s)	404
BspFNI	CGCG	1 cut(s)	199
BspHI	TCATGA	2 cut(s)	325, 466
BspLI	GGNNCC	1 cut(s)	182
BspOI	GCTAGC	1 cut(s)	432
BspPI	GGATC	1 cut(s)	459
BspT107I	GGYRCC	1 cut(s)	180
BsrI	ACTGG	1 cut(s)	285
BssMI	GATC	2 cut(s)	412, 451
Bst4CI	ACNGT	2 cut(s)	320, 333
BstC8I	GCNNGC	4 cut(s)	128, 138, 195, 430
BstDEI	CTNAG	1 cut(s)	391
BstF5I	GGATG	1 cut(s)	376
BstFNI	CGCG	1 cut(s)	199
BstHHI	GCGC	1 cut(s)	199
BstKTI	GATC	2 cut(s)	415, 454
BstMAI	GTCTC	1 cut(s)	248
BstMBI	GATC	2 cut(s)	412, 451
BstNSI	RCATGY	1 cut(s)	514
BstSCI	CCNGG	1 cut(s)	156
BstUI	CGCG	1 cut(s)	199
BstV1I	GCAGC	3 cut(s)	259, 412, 454
BstV2I	GAAGAC	1 cut(s)	212
BsuRI	GGCC	2 cut(s)	140, 161
BtsCI	GGATG	1 cut(s)	376
BtsIMutI	CAGTG	2 cut(s)	325, 399
Cac8I	GCNNGC	4 cut(s)	128, 138, 195, 430
CciI	TCATGA	2 cut(s)	325, 466
CfoI	GCGC	1 cut(s)	199
CseI	GACGC	1 cut(s)	217
Csp6I	GTAC	1 cut(s)	181
CviAII	CATG	4 cut(s)	326, 455, 467, 511
CviQI	GTAC	1 cut(s)	181
DdeI	CTNAG	1 cut(s)	391
DpnI	GATC	2 cut(s)	414, 453
DpnII	GATC	2 cut(s)	412, 451
EaeI	YGGCCR	2 cut(s)	138, 159
Ecl136II	GAGCTC	2 cut(s)	223, 490
Eco24I	GRGCYC	2 cut(s)	225, 492
Eco53kI	GAGCTC	2 cut(s)	223, 490
Eco57I	CTGAAG	1 cut(s)	79
Eco88I	CYCGRG	2 cut(s)	113, 218
EcoICRI	GAGCTC	2 cut(s)	223, 490
EcoT38I	GRGCYC	2 cut(s)	225, 492
FaeI	CATG	4 cut(s)	329, 458, 470, 514
FaiI	YATR	5 cut(s)	327, 456, 468, 495, 512
FalI	AAGNNNNNCTT	2 cut(s)	63, 95
FatI	CATG	4 cut(s)	325, 454, 466, 510
FbaI	TGATCA	1 cut(s)	412
Fnu4HI	GCNGC	3 cut(s)	248, 426, 443
FokI	GGATG	1 cut(s)	363
FriOI	GRGCYC	2 cut(s)	225, 492
Fsp4HI	GCNGC	3 cut(s)	248, 426, 443
FspBI	CTAG	2 cut(s)	429, 435
GlaI	GCGC	1 cut(s)	198
GluI	GCNGC	3 cut(s)	248, 426, 443
GsuI	CTGGAG	3 cut(s)	104, 272, 302
HaeIII	GGCC	2 cut(s)	140, 161
HapII	CCGG	1 cut(s)	158
HgaI	GACGC	1 cut(s)	217
HhaI	GCGC	1 cut(s)	199
Hin1II	CATG	4 cut(s)	329, 458, 470, 514
Hin6I	GCGC	1 cut(s)	197
HinP1I	GCGC	1 cut(s)	197
HindIII	AAGCTT	2 cut(s)	77, 91
HinfI	GANTC	2 cut(s)	153, 238
HpaII	CCGG	1 cut(s)	158
HphI	GGTGA	1 cut(s)	380
Hpy188I	TCNGA	2 cut(s)	103, 152
Hpy188III	TCNNGA	4 cut(s)	83, 326, 416, 467
HpyCH4III	ACNGT	2 cut(s)	320, 333
HpyCH4V	TGCA	3 cut(s)	247, 260, 442
HpyF3I	CTNAG	1 cut(s)	391
Hsp92II	CATG	4 cut(s)	329, 458, 470, 514
HspAI	GCGC	1 cut(s)	197
KpnI	GGTACC	1 cut(s)	184
Ksp22I	TGATCA	1 cut(s)	412
Kzo9I	GATC	2 cut(s)	412, 451
LmnI	GCTCC	3 cut(s)	104, 135, 487
Lsp1109I	GCAGC	3 cut(s)	259, 412, 454
MaeI	CTAG	2 cut(s)	429, 435
MalI	GATC	2 cut(s)	414, 453
MboI	GATC	2 cut(s)	412, 451
MboII	GAAGA	1 cut(s)	217
MhlI	GDGCHC	3 cut(s)	225, 325, 492
MlsI	TGGCCA	1 cut(s)	140
MluCI	AATT	1 cut(s)	35
MluNI	TGGCCA	1 cut(s)	140
MmeI	TCCRAC	1 cut(s)	126
MnlI	CCTC	7 cut(s)	48, 227, 267, 291, 412, 463, 478
Mox20I	TGGCCA	1 cut(s)	140
MroXI	GAANNNNTTC	1 cut(s)	35
MscI	TGGCCA	1 cut(s)	140
MseI	TTAA	4 cut(s)	303, 314, 462, 474
Msp20I	TGGCCA	1 cut(s)	140
MspA1I	CMGCKG	1 cut(s)	250
MspI	CCGG	1 cut(s)	158
MspR9I	CCNGG	1 cut(s)	158
MvnI	CGCG	1 cut(s)	199
NciI	CCSGG	1 cut(s)	158
NdeII	GATC	2 cut(s)	412, 451
NheI	GCTAGC	1 cut(s)	428
NlaIII	CATG	4 cut(s)	329, 458, 470, 514
NlaIV	GGNNCC	1 cut(s)	182
NmeAIII	GCCGAG	1 cut(s)	204
NspI	RCATGY	1 cut(s)	514
PaeR7I	CTCGAG	2 cut(s)	113, 218
PagI	TCATGA	2 cut(s)	325, 466
PdmI	GAANNNNTTC	1 cut(s)	35
PfeI	GAWTC	2 cut(s)	153, 238
PkrI	GCNGC	3 cut(s)	249, 427, 444
Psp124BI	GAGCTC	2 cut(s)	225, 492
PspN4I	GGNNCC	1 cut(s)	182
PspXI	VCTCGAGB	2 cut(s)	113, 218
PvuII	CAGCTG	1 cut(s)	250
RsaI	GTAC	1 cut(s)	182
RsaNI	GTAC	1 cut(s)	181
SacI	GAGCTC	2 cut(s)	225, 492
SaqAI	TTAA	4 cut(s)	303, 314, 462, 474
SatI	GCNGC	3 cut(s)	248, 426, 443
Sau3AI	GATC	2 cut(s)	412, 451
ScrFI	CCNGG	1 cut(s)	158
SduI	GDGCHC	3 cut(s)	225, 325, 492
Sfr274I	CTCGAG	2 cut(s)	113, 218
SlaI	CTCGAG	2 cut(s)	113, 218
SmlI	CTYRAG	2 cut(s)	113, 218
SmoI	CTYRAG	2 cut(s)	113, 218
Sse9I	AATT	1 cut(s)	35
SsiI	CCGC	3 cut(s)	124, 199, 266
SspMI	CTAG	2 cut(s)	429, 435
SstI	GAGCTC	2 cut(s)	225, 492
StyD4I	CCNGG	1 cut(s)	156
TaaI	ACNGT	2 cut(s)	320, 333
TaqI	TCGA	2 cut(s)	114, 219
TasI	AATT	1 cut(s)	35
TfiI	GAWTC	2 cut(s)	153, 238
Tru1I	TTAA	4 cut(s)	303, 314, 462, 474
Tru9I	TTAA	4 cut(s)	303, 314, 462, 474
TscAI	CASTG	2 cut(s)	325, 399
TseI	GCWGC	3 cut(s)	247, 425, 442
TspDTI	ATGAA	1 cut(s)	342
TspRI	CASTG	2 cut(s)	325, 399
XceI	RCATGY	1 cut(s)	514
XhoI	CTCGAG	2 cut(s)	113, 218
XmnI	GAANNNNTTC	1 cut(s)	35
XspI	CTAG	2 cut(s)	429, 435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.