Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0006136

Physical Location & Seq

Genomic Coordinates Forward (+)

51152696 .. 51153136

Gene Structure 441 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00035130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGGAAGTCAAATTATGATCATTGCAACAAAACTAGTGGATTTTCCATTAAAGTGGGCTAGAGCAGGAATGGTAATTTCAACAGCTTCAGTATTTGATGCCACAAAGAAGTATAGGAGGGTGTTATATAGAGGGCATGTGTCTATGAGACCTTTGTGCCTTTACATGGATCCTCCCAATGAATGGTATTTCAGGACTTCTATGGATATAGGTGAATTTGGGTTTGGGAGATCAGCTGACGCTCTTCAGCCATTAATTGATTGTCCTGGAAATGCTGAATATGCAGATGGGTTTATGGCTGGGGCTGATGGGGAGGTACAGAAGGTACCAAGGGCTATTTGCATTTTTGAATTGTACTCGGGTGATGTTACAATGAGACATATTGCAATCAGAAATTTCATTATGCAAATGCTACCAGTTTCGGCAACCCAACTGGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005623 GO:0007154 GO:0007165 GO:0008131 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009888 GO:0009987 GO:0010033 GO:0010035 GO:0010087 GO:0010089 GO:0010941 GO:0016491 GO:0016638 GO:0016641 GO:0023052 GO:0030312 GO:0032502 GO:0032870 GO:0042221 GO:0043067 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0052597 GO:0055114 GO:0065007 GO:0070887 GO:0071229 GO:0071241 GO:0071310 GO:0071395 GO:0071495 GO:0071944 GO:0090059 GO:0097184 GO:0097185 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00260 ko00350 ko00360 ko00410 ko00950 ko00960 ko01100 ko01110 map00260 map00350 map00360 map00410 map00950 map00960 map01100 map01110

Pfam Domains

Protein Families

Cu_amine_oxid Cu_amine_oxidN2 Cu_amine_oxidN3

Protein Analysis

146

Amino Acids

16.35

Weight (kDa)

7.71

Isoelectric Point (pI)

27.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_amine_oxid	PF01179	20 - 133	7.8e-25	Copper amine oxidase, enzyme domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0006136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14940
fragaria_vesca	FvH4_4g15350 FvH4_4g15390
malus_domestica	MD13G1191800.v1.1
prunus_persica	Prupe.1G012100_v2.0.a1 Prupe.1G012100_v2.0.a1
pyrus_communis	pycom13g16440
rosa_chinensis	RchiOBHm_Chr4g0416411 RchiOBHm_Chr5g0045871
rosa_laevigata	RLG00000007984 RLG00000034395
rosa_multiflora	Rmu_sc0001488.1_g000020
rosa_roxburghii	Rroxscaffold_1G00035130 Rroxscaffold_1G00035220 Rroxscaffold_5G00360240
rosa_rugosa	Rorug04G0141600 Rorug04G0141700 Rorug05G0226600
rosa_samantha	Rh4AG204000 Rh4BG201400 Rh4CG215200 Rh4DG201300 Rh5BG316100 Rh5DG326400
rosa_wichuraiana	Rw0G018920 Rw4G017270 Rw5G028820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	325
AccB1I	GGYRCC	1 cut(s)	325
AccB7I	CCANNNNNTGG	1 cut(s)	183
AclWI	GGATC	2 cut(s)	164, 177
AcsI	RAATTY	2 cut(s)	215, 394
AcuI	CTGAAG	2 cut(s)	72, 230
AfaI	GTAC	3 cut(s)	318, 327, 356
AfiI	CCNNNNNNNGG	2 cut(s)	166, 183
AgsI	TTSAA	2 cut(s)	81, 350
AhlI	ACTAGT	1 cut(s)	34
AjnI	CCWGG	1 cut(s)	265
AjuI	GAANNNNNNNTTGG	2 cut(s)	207, 239
AluBI	AGCT	2 cut(s)	86, 236
AluI	AGCT	2 cut(s)	86, 236
Alw26I	GTCTC	2 cut(s)	142, 370
AlwI	GGATC	2 cut(s)	164, 177
Ama87I	CYCGRG	1 cut(s)	358
ApoI	RAATTY	2 cut(s)	215, 394
AseI	ATTAAT	1 cut(s)	254
Asp718I	GGTACC	1 cut(s)	325
AsuHPI	GGTGA	2 cut(s)	224, 374
AvaI	CYCGRG	1 cut(s)	358
BamHI	GGATCC	1 cut(s)	169
BanI	GGYRCC	1 cut(s)	325
BccI	CCATC	2 cut(s)	281, 302
BciT130I	CCWGG	1 cut(s)	267
BclI	TGATCA	1 cut(s)	18
BcoDI	GTCTC	2 cut(s)	142, 370
BcuI	ACTAGT	1 cut(s)	34
BfaI	CTAG	2 cut(s)	35, 60
Bme1390I	CCNGG	1 cut(s)	267
BmeT110I	CYCGRG	1 cut(s)	358
BmiI	GGNNCC	2 cut(s)	171, 327
BmrFI	CCNGG	1 cut(s)	267
BmsI	GCATC	1 cut(s)	88
BsaI	GGTCTC	1 cut(s)	142
BsaJI	CCNNGG	1 cut(s)	329
Bsc4I	CCNNNNNNNGG	2 cut(s)	166, 183
Bse1I	ACTGG	2 cut(s)	416, 438
Bse3DI	GCAATG	1 cut(s)	21
BseBI	CCWGG	1 cut(s)	267
BseDI	CCNNGG	1 cut(s)	329
BseLI	CCNNNNNNNGG	2 cut(s)	166, 183
BseMI	GCAATG	1 cut(s)	21
BseNI	ACTGG	2 cut(s)	416, 438
BseYI	CCCAGC	1 cut(s)	299
BshNI	GGYRCC	1 cut(s)	325
BsiHKCI	CYCGRG	1 cut(s)	358
BslI	CCNNNNNNNGG	2 cut(s)	166, 183
BsmAI	GTCTC	2 cut(s)	142, 370
Bso31I	GGTCTC	1 cut(s)	142
BsoBI	CYCGRG	1 cut(s)	358
Bsp143I	GATC	3 cut(s)	18, 169, 230
BspLI	GGNNCC	2 cut(s)	171, 327
BspPI	GGATC	2 cut(s)	164, 177
BspQI	GCTCTTC	1 cut(s)	249
BspT107I	GGYRCC	1 cut(s)	325
BspTNI	GGTCTC	1 cut(s)	142
BsrDI	GCAATG	1 cut(s)	21
BsrI	ACTGG	2 cut(s)	416, 438
BssECI	CCNNGG	1 cut(s)	329
BssMI	GATC	3 cut(s)	18, 169, 230
BssT1I	CCWWGG	1 cut(s)	329
Bst2UI	CCWGG	1 cut(s)	267
Bst6I	CTCTTC	1 cut(s)	249
BstKTI	GATC	3 cut(s)	21, 172, 233
BstMAI	GTCTC	2 cut(s)	142, 370
BstMBI	GATC	3 cut(s)	18, 169, 230
BstMWI	GCNNNNNNNGC	1 cut(s)	281
BstNI	CCWGG	1 cut(s)	267
BstNSI	RCATGY	1 cut(s)	140
BstSCI	CCNGG	1 cut(s)	265
BstX2I	RGATCY	1 cut(s)	169
BstXI	CCANNNNNNTGG	1 cut(s)	54
BstYI	RGATCY	1 cut(s)	169
CseI	GACGC	1 cut(s)	248
Csp6I	GTAC	3 cut(s)	317, 326, 355
CspCI	CAANNNNNGTGG	2 cut(s)	18, 53
CviAII	CATG	2 cut(s)	137, 166
CviJI	RGCY	7 cut(s)	59, 86, 236, 250, 299, 305, 335
CviKI_1	RGCY	7 cut(s)	59, 86, 236, 250, 299, 305, 335
CviQI	GTAC	3 cut(s)	317, 326, 355
DpnI	GATC	3 cut(s)	20, 171, 232
DpnII	GATC	3 cut(s)	18, 169, 230
Eam1104I	CTCTTC	1 cut(s)	249
EarI	CTCTTC	1 cut(s)	249
Eco130I	CCWWGG	1 cut(s)	329
Eco31I	GGTCTC	1 cut(s)	142
Eco57I	CTGAAG	2 cut(s)	72, 230
Eco88I	CYCGRG	1 cut(s)	358
EcoRII	CCWGG	1 cut(s)	265
EcoT14I	CCWWGG	1 cut(s)	329
ErhI	CCWWGG	1 cut(s)	329
FaeI	CATG	2 cut(s)	140, 169
FatI	CATG	2 cut(s)	136, 165
FbaI	TGATCA	1 cut(s)	18
FspBI	CTAG	2 cut(s)	35, 60
GsaI	CCCAGC	1 cut(s)	303
HgaI	GACGC	1 cut(s)	248
Hin1II	CATG	2 cut(s)	140, 169
HphI	GGTGA	2 cut(s)	224, 374
Hpy188I	TCNGA	1 cut(s)	392
Hpy188III	TCNNGA	1 cut(s)	193
HpyAV	CCTTC	1 cut(s)	316
HpyCH4V	TGCA	5 cut(s)	26, 284, 342, 386, 406
HpyF10VI	GCNNNNNNNGC	1 cut(s)	281
Hsp92II	CATG	2 cut(s)	140, 169
KpnI	GGTACC	1 cut(s)	329
Ksp22I	TGATCA	1 cut(s)	18
Kzo9I	GATC	3 cut(s)	18, 169, 230
LguI	GCTCTTC	1 cut(s)	249
LpnPI	CCDG	7 cut(s)	51, 178, 252, 279, 285, 419, 429
LweI	GCATC	1 cut(s)	88
MaeI	CTAG	2 cut(s)	35, 60
MaeIII	GTNAC	1 cut(s)	367
MalI	GATC	3 cut(s)	20, 171, 232
MboI	GATC	3 cut(s)	18, 169, 230
MboII	GAAGA	1 cut(s)	236
MflI	RGATCY	1 cut(s)	169
MluCI	AATT	6 cut(s)	12, 75, 215, 255, 350, 394
MnlI	CCTC	4 cut(s)	111, 125, 183, 307
MseI	TTAA	2 cut(s)	50, 254
MslI	CAYNNNNRTG	1 cut(s)	52
MspA1I	CMGCKG	1 cut(s)	236
MspR9I	CCNGG	1 cut(s)	267
MvaI	CCWGG	1 cut(s)	267
MwoI	GCNNNNNNNGC	1 cut(s)	281
NdeII	GATC	3 cut(s)	18, 169, 230
NlaIII	CATG	2 cut(s)	140, 169
NlaIV	GGNNCC	2 cut(s)	171, 327
NspI	RCATGY	1 cut(s)	140
PciSI	GCTCTTC	1 cut(s)	249
PflMI	CCANNNNNTGG	1 cut(s)	183
PfoI	TCCNGGA	1 cut(s)	265
PshBI	ATTAAT	1 cut(s)	254
Psp6I	CCWGG	1 cut(s)	265
PspFI	CCCAGC	1 cut(s)	299
PspGI	CCWGG	1 cut(s)	265
PspN4I	GGNNCC	2 cut(s)	171, 327
PsuI	RGATCY	1 cut(s)	169
PvuII	CAGCTG	1 cut(s)	236
RsaI	GTAC	3 cut(s)	318, 327, 356
RsaNI	GTAC	3 cut(s)	317, 326, 355
RseI	CAYNNNNRTG	1 cut(s)	52
SapI	GCTCTTC	1 cut(s)	249
SaqAI	TTAA	2 cut(s)	50, 254
Sau3AI	GATC	3 cut(s)	18, 169, 230
ScrFI	CCNGG	1 cut(s)	267
SetI	ASST	6 cut(s)	88, 154, 214, 238, 318, 327
SfaNI	GCATC	1 cut(s)	88
SmiMI	CAYNNNNRTG	1 cut(s)	52
SpeI	ACTAGT	1 cut(s)	34
Sse9I	AATT	6 cut(s)	12, 75, 215, 255, 350, 394
SspMI	CTAG	2 cut(s)	35, 60
StyD4I	CCNGG	1 cut(s)	265
StyI	CCWWGG	1 cut(s)	329
TasI	AATT	6 cut(s)	12, 75, 215, 255, 350, 394
TatI	WGTACW	1 cut(s)	354
Tru1I	TTAA	2 cut(s)	50, 254
Tru9I	TTAA	2 cut(s)	50, 254
TspDTI	ATGAA	2 cut(s)	195, 388
Van91I	CCANNNNNTGG	1 cut(s)	183
VspI	ATTAAT	1 cut(s)	254
XapI	RAATTY	2 cut(s)	215, 394
XceI	RCATGY	1 cut(s)	140
XspI	CTAG	2 cut(s)	35, 60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.