Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0006136

Physical Location & Seq

Genomic Coordinates Reverse (-)

43786298 .. 43788935

Gene Structure 2638 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G028820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGACTTGGACACCAACATTATCATATCCAACCACTTGTTCAGAGCTAGTAAGCTTCCTTTGCCTTACCCCAAATTCAAGAAATCAATGGTCACCATTCTTGTGGATGTTGATTTGATGAAGATCACAATGTACACTGATAGGTTCATAGCCCCTTTGCCTAAAGTTTCAAATTATGATCATTGCAACAAAACTAGTGGATTTTCCATTAAAGGCCACAAGGTGAAGTGGGCAAACTGGGTTTTTCATGTTGGGTTCAAGGCTAGAGCAGGAATGGTAATTTCAACAGCTTCAAGGGCATGTGTCTATGAGACCTTTGTGCTTTACATGGATCCTCCCAATGAATGGTATTTCAGGACTTTTATGGATATAGGTGAATTTGGGTTTGGGAGATCAGCTGACGCTCTTCAGCCATTAATTGATTGTCCCGGAAATGCTGAATATGTAGATGGGTTTATGGCATGTAGATGGAAGGTACCAAGGGCTATTTGCATTTTTGAATTGTACTCAGGTGATATTACAATCAGACATAGTGAAATTAATGTACCTGGCAAATTGATAAGAAGTGGGCAGCAGGAGAAGACTCTAGTTAGAATGGAGGCTACTGTGGGTAACTATGATTATGTTCTTGATTGGGAATTCAAGCAAAGTGGCACCACTAAAGTTGGGGTGGACTTGACTAGTGTCTTGGAGGTGAAGGCCACGTCATACACAAATGCTGACCAGATAACGGAAAACATCTACAGTAACGACAACTCCTTTGTCAAAGCCAAGATGAAAACAGCAACAGCTAACGACGGCGCGTCACCGAAAGAATTATTGGAAGGTAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005623 GO:0007154 GO:0007165 GO:0008131 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009888 GO:0009987 GO:0010033 GO:0010035 GO:0010087 GO:0010089 GO:0010941 GO:0016491 GO:0016638 GO:0016641 GO:0023052 GO:0030312 GO:0032502 GO:0032870 GO:0042221 GO:0043067 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0052597 GO:0055114 GO:0065007 GO:0070887 GO:0071229 GO:0071241 GO:0071310 GO:0071395 GO:0071495 GO:0071944 GO:0090059 GO:0097184 GO:0097185 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00260 ko00350 ko00360 ko00410 ko00950 ko00960 ko01100 ko01110 map00260 map00350 map00360 map00410 map00950 map00960 map01100 map01110

Pfam Domains

Protein Families

Cu_amine_oxid Cu_amine_oxidN2 Cu_amine_oxidN3

Protein Analysis

277

Amino Acids

31.24

Weight (kDa)

7.61

Isoelectric Point (pI)

31.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_amine_oxid	PF01179	66 - 247	1.9e-45	Copper amine oxidase, enzyme domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14940
fragaria_vesca	FvH4_4g15350 FvH4_4g15390
malus_domestica	MD13G1191800.v1.1
prunus_persica	Prupe.1G012100_v2.0.a1 Prupe.1G012100_v2.0.a1
pyrus_communis	pycom13g16440
rosa_chinensis	RchiOBHm_Chr4g0416411 RchiOBHm_Chr5g0045871
rosa_laevigata	RLG00000007984 RLG00000034395
rosa_multiflora	Rmu_sc0001488.1_g000020
rosa_roxburghii	Rroxscaffold_1G00035130 Rroxscaffold_1G00035220 Rroxscaffold_5G00360240
rosa_rugosa	Rorug04G0141600 Rorug04G0141700 Rorug05G0226600
rosa_samantha	Rh4AG204000 Rh4BG201400 Rh4CG215200 Rh4DG201300 Rh5BG316100 Rh5DG326400
rosa_wichuraiana	Rw0G018920 Rw4G017270 Rw5G028820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	475
AccB1I	GGYRCC	2 cut(s)	475, 653
AccB7I	CCANNNNNTGG	1 cut(s)	345
AccII	CGCG	1 cut(s)	803
AclWI	GGATC	2 cut(s)	326, 339
AcsI	RAATTY	3 cut(s)	74, 377, 638
AcuI	CTGAAG	1 cut(s)	392
AdeI	CACNNNGTG	1 cut(s)	223
AfaI	GTAC	4 cut(s)	134, 477, 506, 546
AfiI	CCNNNNNNNGG	2 cut(s)	345, 730
AgsI	TTSAA	7 cut(s)	79, 171, 259, 285, 294, 500, 643
AhdI	GACNNNNNGTC	1 cut(s)	802
AhlI	ACTAGT	2 cut(s)	194, 680
AjiI	CACGTC	1 cut(s)	705
AjnI	CCWGG	1 cut(s)	547
AjuI	GAANNNNNNNTTGG	5 cut(s)	23, 55, 369, 401, 803
AluBI	AGCT	5 cut(s)	47, 55, 290, 398, 791
AluI	AGCT	5 cut(s)	47, 55, 290, 398, 791
Alw26I	GTCTC	1 cut(s)	305
AlwI	GGATC	2 cut(s)	326, 339
AoxI	GGCC	2 cut(s)	214, 699
ApeKI	GCWGC	1 cut(s)	571
ApoI	RAATTY	3 cut(s)	74, 377, 638
ArsI	GACNNNNNNTTYG	2 cut(s)	743, 775
AseI	ATTAAT	2 cut(s)	416, 540
Asp718I	GGTACC	1 cut(s)	475
AspLEI	GCGC	1 cut(s)	803
AsuC2I	CCSGG	1 cut(s)	429
AsuHPI	GGTGA	6 cut(s)	85, 235, 386, 524, 706, 798
BamHI	GGATCC	1 cut(s)	331
BanI	GGYRCC	2 cut(s)	475, 653
BbsI	GAAGAC	1 cut(s)	587
BbvI	GCAGC	1 cut(s)	583
BccI	CCATC	2 cut(s)	443, 462
BceAI	ACGGC	1 cut(s)	814
BciT130I	CCWGG	1 cut(s)	549
BclI	TGATCA	1 cut(s)	178
BcnI	CCSGG	1 cut(s)	429
BcoDI	GTCTC	1 cut(s)	305
BcuI	ACTAGT	2 cut(s)	194, 680
BfaI	CTAG	5 cut(s)	48, 195, 264, 587, 681
BfmI	CTRYAG	1 cut(s)	742
BisI	GCNGC	1 cut(s)	572
BlsI	GCNGC	1 cut(s)	573
Bme1390I	CCNGG	2 cut(s)	429, 549
BmeRI	GACNNNNNGTC	1 cut(s)	802
BmgBI	CACGTC	1 cut(s)	705
BmiI	GGNNCC	3 cut(s)	333, 477, 655
BmrFI	CCNGG	2 cut(s)	429, 549
BmrI	ACTGGG	1 cut(s)	247
BmuI	ACTGGG	1 cut(s)	247
BoxI	GACNNNNGTC	1 cut(s)	683
BpiI	GAAGAC	1 cut(s)	587
BpuMI	CCSGG	1 cut(s)	429
BsaBI	GATNNNNATC	1 cut(s)	122
BsaI	GGTCTC	1 cut(s)	305
BsaJI	CCNNGG	1 cut(s)	479
BsaXI	ACNNNNNCTCC	2 cut(s)	740, 770
Bsc4I	CCNNNNNNNGG	2 cut(s)	345, 730
Bse1I	ACTGG	1 cut(s)	242
Bse3DI	GCAATG	1 cut(s)	181
Bse8I	GATNNNNATC	1 cut(s)	122
BseBI	CCWGG	1 cut(s)	549
BseDI	CCNNGG	1 cut(s)	479
BseGI	GGATG	1 cut(s)	112
BseJI	GATNNNNATC	1 cut(s)	122
BseLI	CCNNNNNNNGG	2 cut(s)	345, 730
BseMI	GCAATG	1 cut(s)	181
BseMII	CTCAG	1 cut(s)	522
BseNI	ACTGG	1 cut(s)	242
BseXI	GCAGC	1 cut(s)	583
Bsh1236I	CGCG	1 cut(s)	803
BshFI	GGCC	2 cut(s)	216, 701
BshNI	GGYRCC	2 cut(s)	475, 653
BsiSI	CCGG	1 cut(s)	429
BslFI	GGGAC	1 cut(s)	411
BslI	CCNNNNNNNGG	2 cut(s)	345, 730
BsmAI	GTCTC	1 cut(s)	305
BsmFI	GGGAC	1 cut(s)	411
BsnI	GGCC	2 cut(s)	216, 701
Bso31I	GGTCTC	1 cut(s)	305
Bsp1407I	TGTACA	1 cut(s)	132
Bsp143I	GATC	4 cut(s)	123, 178, 331, 392
BspANI	GGCC	2 cut(s)	216, 701
BspCNI	CTCAG	1 cut(s)	521
BspFNI	CGCG	1 cut(s)	803
BspLI	GGNNCC	3 cut(s)	333, 477, 655
BspPI	GGATC	2 cut(s)	326, 339
BspQI	GCTCTTC	1 cut(s)	411
BspT107I	GGYRCC	2 cut(s)	475, 653
BspTNI	GGTCTC	1 cut(s)	305
BsrDI	GCAATG	1 cut(s)	181
BsrGI	TGTACA	1 cut(s)	132
BsrI	ACTGG	1 cut(s)	242
BssECI	CCNNGG	1 cut(s)	479
BssMI	GATC	4 cut(s)	123, 178, 331, 392
BssT1I	CCWWGG	1 cut(s)	479
Bst2UI	CCWGG	1 cut(s)	549
Bst4CI	ACNGT	2 cut(s)	607, 746
Bst6I	CTCTTC	1 cut(s)	411
BstAUI	TGTACA	1 cut(s)	132
BstDEI	CTNAG	1 cut(s)	508
BstEII	GGTNACC	1 cut(s)	91
BstF5I	GGATG	1 cut(s)	112
BstFNI	CGCG	1 cut(s)	803
BstHHI	GCGC	1 cut(s)	803
BstKTI	GATC	4 cut(s)	126, 181, 334, 395
BstMAI	GTCTC	1 cut(s)	305
BstMBI	GATC	4 cut(s)	123, 178, 331, 392
BstMWI	GCNNNNNNNGC	2 cut(s)	61, 296
BstNI	CCWGG	1 cut(s)	549
BstNSI	RCATGY	2 cut(s)	303, 465
BstPAI	GACNNNNGTC	1 cut(s)	683
BstPI	GGTNACC	1 cut(s)	91
BstSCI	CCNGG	2 cut(s)	427, 547
BstSFI	CTRYAG	1 cut(s)	742
BstUI	CGCG	1 cut(s)	803
BstV1I	GCAGC	1 cut(s)	583
BstV2I	GAAGAC	1 cut(s)	587
BstX2I	RGATCY	1 cut(s)	331
BstXI	CCANNNNNNTGG	1 cut(s)	103
BstYI	RGATCY	1 cut(s)	331
BsuRI	GGCC	2 cut(s)	216, 701
BtrI	CACGTC	1 cut(s)	705
BtsCI	GGATG	1 cut(s)	112
BtsIMutI	CAGTG	1 cut(s)	135
CfoI	GCGC	1 cut(s)	803
CseI	GACGC	2 cut(s)	410, 792
Csp6I	GTAC	4 cut(s)	133, 476, 505, 545
CspCI	CAANNNNNGTGG	6 cut(s)	178, 213, 631, 646, 666, 681
CviAII	CATG	4 cut(s)	248, 300, 328, 462
CviQI	GTAC	4 cut(s)	133, 476, 505, 545
DdeI	CTNAG	1 cut(s)	508
DpnI	GATC	4 cut(s)	125, 180, 333, 394
DpnII	GATC	4 cut(s)	123, 178, 331, 392
DraIII	CACNNNGTG	1 cut(s)	223
DriI	GACNNNNNGTC	1 cut(s)	802
Eam1104I	CTCTTC	1 cut(s)	411
Eam1105I	GACNNNNNGTC	1 cut(s)	802
EarI	CTCTTC	1 cut(s)	411
Eco130I	CCWWGG	1 cut(s)	479
Eco31I	GGTCTC	1 cut(s)	305
Eco57I	CTGAAG	1 cut(s)	392
Eco91I	GGTNACC	1 cut(s)	91
EcoO65I	GGTNACC	1 cut(s)	91
EcoRI	GAATTC	1 cut(s)	638
EcoRII	CCWGG	1 cut(s)	547
EcoT14I	CCWWGG	1 cut(s)	479
ErhI	CCWWGG	1 cut(s)	479
FaeI	CATG	4 cut(s)	251, 303, 331, 465
FaqI	GGGAC	1 cut(s)	411
FatI	CATG	4 cut(s)	247, 299, 327, 461
FbaI	TGATCA	1 cut(s)	178
Fnu4HI	GCNGC	1 cut(s)	572
FokI	GGATG	1 cut(s)	119
Fsp4HI	GCNGC	1 cut(s)	572
FspBI	CTAG	5 cut(s)	48, 195, 264, 587, 681
GlaI	GCGC	1 cut(s)	802
GluI	GCNGC	1 cut(s)	572
HaeIII	GGCC	2 cut(s)	216, 701
HapII	CCGG	1 cut(s)	429
HgaI	GACGC	2 cut(s)	410, 792
HhaI	GCGC	1 cut(s)	803
Hin1II	CATG	4 cut(s)	251, 303, 331, 465
Hin6I	GCGC	1 cut(s)	801
HinP1I	GCGC	1 cut(s)	801
HindIII	AAGCTT	1 cut(s)	53
HinfI	GANTC	1 cut(s)	583
HpaII	CCGG	1 cut(s)	429
HphI	GGTGA	6 cut(s)	85, 235, 386, 524, 706, 798
Hpy166II	GTNNAC	2 cut(s)	135, 673
Hpy188I	TCNGA	2 cut(s)	44, 527
Hpy188III	TCNNGA	3 cut(s)	79, 355, 629
Hpy8I	GTNNAC	2 cut(s)	135, 673
Hpy99I	CGWCG	1 cut(s)	800
HpyAV	CCTTC	3 cut(s)	466, 691, 818
HpyCH4III	ACNGT	2 cut(s)	607, 746
HpyCH4IV	ACGT	1 cut(s)	704
HpyCH4V	TGCA	2 cut(s)	186, 492
HpyF10VI	GCNNNNNNNGC	2 cut(s)	61, 296
HpyF3I	CTNAG	1 cut(s)	508
HpySE526I	ACGT	1 cut(s)	704
Hsp92II	CATG	4 cut(s)	251, 303, 331, 465
HspAI	GCGC	1 cut(s)	801
KpnI	GGTACC	1 cut(s)	479
Ksp22I	TGATCA	1 cut(s)	178
Kzo9I	GATC	4 cut(s)	123, 178, 331, 392
LguI	GCTCTTC	1 cut(s)	411
LpnPI	CCDG	9 cut(s)	223, 255, 340, 442, 495, 534, 560, 561, 737
Lsp1109I	GCAGC	1 cut(s)	583
MaeI	CTAG	5 cut(s)	48, 195, 264, 587, 681
MaeII	ACGT	1 cut(s)	704
MaeIII	GTNAC	4 cut(s)	91, 611, 746, 804
MalI	GATC	4 cut(s)	125, 180, 333, 394
MboI	GATC	4 cut(s)	123, 178, 331, 392
MboII	GAAGA	3 cut(s)	133, 398, 592
MflI	RGATCY	1 cut(s)	331
MlyI	GAGTC	1 cut(s)	577
MmeI	TCCRAC	1 cut(s)	54
MnlI	CCTC	3 cut(s)	345, 592, 685
MseI	TTAA	3 cut(s)	210, 416, 540
MslI	CAYNNNNRTG	2 cut(s)	101, 466
MspA1I	CMGCKG	1 cut(s)	398
MspI	CCGG	1 cut(s)	429
MspR9I	CCNGG	2 cut(s)	429, 549
MvaI	CCWGG	1 cut(s)	549
MvnI	CGCG	1 cut(s)	803
MwoI	GCNNNNNNNGC	2 cut(s)	61, 296
NciI	CCSGG	1 cut(s)	429
NdeII	GATC	4 cut(s)	123, 178, 331, 392
NlaIII	CATG	4 cut(s)	251, 303, 331, 465
NlaIV	GGNNCC	3 cut(s)	333, 477, 655
NmuCI	GTSAC	2 cut(s)	91, 804
NspI	RCATGY	2 cut(s)	303, 465
PciSI	GCTCTTC	1 cut(s)	411
PflMI	CCANNNNNTGG	1 cut(s)	345
PfoI	TCCNGGA	1 cut(s)	427
PkrI	GCNGC	1 cut(s)	573
PleI	GAGTC	1 cut(s)	577
PpsI	GAGTC	1 cut(s)	577
PshAI	GACNNNNGTC	1 cut(s)	683
PshBI	ATTAAT	2 cut(s)	416, 540
Psp6I	CCWGG	1 cut(s)	547
PspEI	GGTNACC	1 cut(s)	91
PspGI	CCWGG	1 cut(s)	547
PspN4I	GGNNCC	3 cut(s)	333, 477, 655
PsuI	RGATCY	1 cut(s)	331
PvuII	CAGCTG	1 cut(s)	398
RsaI	GTAC	4 cut(s)	134, 477, 506, 546
RsaNI	GTAC	4 cut(s)	133, 476, 505, 545
RseI	CAYNNNNRTG	2 cut(s)	101, 466
SapI	GCTCTTC	1 cut(s)	411
SaqAI	TTAA	3 cut(s)	210, 416, 540
SatI	GCNGC	1 cut(s)	572
Sau3AI	GATC	4 cut(s)	123, 178, 331, 392
SchI	GAGTC	1 cut(s)	577
ScrFI	CCNGG	2 cut(s)	429, 549
SfcI	CTRYAG	1 cut(s)	742
SmiMI	CAYNNNNRTG	2 cut(s)	101, 466
SpeI	ACTAGT	2 cut(s)	194, 680
SspMI	CTAG	5 cut(s)	48, 195, 264, 587, 681
StyD4I	CCNGG	2 cut(s)	427, 547
StyI	CCWWGG	1 cut(s)	479
TaaI	ACNGT	2 cut(s)	607, 746
TaiI	ACGT	1 cut(s)	707
TatI	WGTACW	2 cut(s)	132, 504
Tru1I	TTAA	3 cut(s)	210, 416, 540
Tru9I	TTAA	3 cut(s)	210, 416, 540
TscAI	CASTG	1 cut(s)	142
TseFI	GTSAC	2 cut(s)	91, 804
TseI	GCWGC	1 cut(s)	571
Tsp45I	GTSAC	2 cut(s)	91, 804
TspDTI	ATGAA	5 cut(s)	134, 136, 236, 357, 791
TspGWI	ACGGA	1 cut(s)	746
TspRI	CASTG	1 cut(s)	142
Van91I	CCANNNNNTGG	1 cut(s)	345
VspI	ATTAAT	2 cut(s)	416, 540
XapI	RAATTY	3 cut(s)	74, 377, 638
XceI	RCATGY	2 cut(s)	303, 465
XspI	CTAG	5 cut(s)	48, 195, 264, 587, 681

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.