Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0006136

Physical Location & Seq

Genomic Coordinates Forward (+)

44554647 .. 44559274

Gene Structure 4628 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG215200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1950 bp

ATGACTGTTTTGTTTATAGCTCTAGTTTTGATCCTGCAATGCTGCTTCACAACTAGTATATACCATCCCCTAGACCCTCTCAGCCCAACTGAGATCAACAAAGTAAGGCTCATCGTTCAGAAGTCTCACCTTGCAACTCTTCCCAACCTCACCTTTCATTATGTCGATATCGAAGAGCCGGAGAAGGAAGATGTCCTTAAGTGGCTATCTTCAAGCTCAAGCAATCCAAAGAGGCACATTTCCGCCCCTCCCCGCCGGGCACACGTGGTGGTTCGAGGCGGTGGTGATGTCCACGAACTCGTGGTGGACTTAGGCACCAACGTTATCATATCCAACCACGTCTACACCGGTAACGGTTATCCTCCTTTCACCTTTATTGAGTTGTTCAAAGCTAGTAAGCTTCCTTTGACTTACCCCAAATTCAAGAAATCAATTTCAACTAGGGGATTGAATTTGTCTGAAGTTTCTTGCATTCCCTTTACAATTGGTTGGTATGGGGAACATATCACAAGGAGGGCTTTAAAAGTGGAATGCTACTATAGAGGAGGGTCAGTAAATGTTTTCACAAGGCCAATTGAGGGAATCACCATTCTTGTGGATGTTGATTTGATGAAGATCACAATGTACACTGATAGGTTCGTAGCCCCTTTGCCTAAAGCTAAAGGCACTGATTTCCAAATCCCAAGAGGGAAGTCAAATTCTGATCATTGCAACAAAACTAGTAGTGGGTTTTCCATTGAAGGCCACAAGGTGAAGTGGGCAAACTGGGTTTTTCATGTTGGGTTCAATGCAAGAGCAGGAATGGTGATTTCAACAGCTTCAGTATTTGATGCCATAAAGAAGAAGTACAGGAGTGTGTTATACAGAGGGCATGTGTCTGAGACCTTTGTGCCTTACATGGATCCTACAAATGAATGGTATTTCAGGACTTTTATGGATATAGGTGAATTTGGGTTTGGGAGATCAGCCGACGCTCTTCAGCCATCAATTGATTGTCCTGGAAATGCTGAATATGTGGATGGGTTTATGGCTGGAGCTGATGGGGAGTTGCAGAAGGTACCAAGGGCTATTTGCATTTTTGAAAGGTACTCGGGTGATGTTGCAATGAGACATACTGAAATTAATATCCCTGGCAAATTGATAAGAAGTGGGCAGCAGGAGAAGACTCTGGTGGTTAGGATGGTGGCTACTGTGGGTAACTATGATTATGTTCTTGATTGGGAATTCAAGCAAAGTGGCACCATTAAAGTTGGGGTAGGCTTGACTGGCGTCTTGGAGGTGAAGGCCACATCATACACCAACGCTGACCAGATGACGGAAAACGTGCACGGAGCGTTAGTCTCAGAAAACACAGTTGCCGTTAACCACGACCACTTCCTCACGTACTATCTAGACCTCGACGTTGACGGTAACGACAATTCCTTTGTCAAAGCCAAGATGAAAACAGCAAGAGCTAACGGCGCCGCGTCACCAAGAAAGAGTTATTGGAAGGTAGTTACAGAAACCGCCAAAACTGAAGCCGAGGCTAGGCTACGGCTCGGCTTAGAGGCGGCTGATTTGTTAGTAGTGAATCCTAATAGGAAGACTAGGCTTGGAAATCACGTGGGTTACCGGCTGGTCACTGGACAACCGGTTACATCTCTTCTGGCCAATGATGATTACCCCCAAATTAGGGCTTCTTATACCAAGTATCAGGTTTGGGTGACTGCCTATAATAAGTCAGAGAGGTGGGCTGGAGGGTTCTATGCTGATAGGAGCCATGGAGATGATGGCTTAGCTGTTTGGAGCAAGAGGAATAGAGCAATTGAAAACAAAGACATAGTATTATGGTATACAGTGGGATTCCATCACATCCCATACCAAGAAGATTTCCCAGCCATGCCCACACTCCATGGTGGATTCGAGCTCAGCCCTGCAAACTTTTTTGAGTCTAACCCATTACTCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005623 GO:0007154 GO:0007165 GO:0008131 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009888 GO:0009987 GO:0010033 GO:0010035 GO:0010087 GO:0010089 GO:0010941 GO:0016491 GO:0016638 GO:0016641 GO:0023052 GO:0030312 GO:0032502 GO:0032870 GO:0042221 GO:0043067 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0052597 GO:0055114 GO:0065007 GO:0070887 GO:0071229 GO:0071241 GO:0071310 GO:0071395 GO:0071495 GO:0071944 GO:0090059 GO:0097184 GO:0097185 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00260 ko00350 ko00360 ko00410 ko00950 ko00960 ko01100 ko01110 map00260 map00350 map00360 map00410 map00950 map00960 map01100 map01110

Pfam Domains

Protein Families

Cu_amine_oxid Cu_amine_oxidN2 Cu_amine_oxidN3

Protein Analysis

649

Amino Acids

72.77

Weight (kDa)

8.65

Isoelectric Point (pI)

36.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_amine_oxidN2	PF02727	22 - 113	4.5e-24	Copper amine oxidase, N2 domain
Cu_amine_oxidN3	PF02728	121 - 214	1.8e-25	Copper amine oxidase, N3 domain
Cu_amine_oxid	PF01179	240 - 647	7.5e-136	Copper amine oxidase, enzyme domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14940
fragaria_vesca	FvH4_4g15350 FvH4_4g15390
malus_domestica	MD13G1191800.v1.1
prunus_persica	Prupe.1G012100_v2.0.a1 Prupe.1G012100_v2.0.a1
pyrus_communis	pycom13g16440
rosa_chinensis	RchiOBHm_Chr4g0416411 RchiOBHm_Chr5g0045871
rosa_laevigata	RLG00000007984 RLG00000034395
rosa_multiflora	Rmu_sc0001488.1_g000020
rosa_roxburghii	Rroxscaffold_1G00035130 Rroxscaffold_1G00035220 Rroxscaffold_5G00360240
rosa_rugosa	Rorug04G0141600 Rorug04G0141700 Rorug05G0226600
rosa_samantha	Rh4AG204000 Rh4BG201400 Rh4CG215200 Rh4DG201300 Rh5BG316100 Rh5DG326400
rosa_wichuraiana	Rw0G018920 Rw4G017270 Rw5G028820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1057
AccB1I	GGYRCC	4 cut(s)	314, 1057, 1238, 1460
AccI	GTMKAC	2 cut(s)	342, 1832
AccII	CGCG	1 cut(s)	1466
AciI	CCGC	6 cut(s)	243, 253, 279, 1464, 1506, 1550
AclI	AACGTT	1 cut(s)	321
AclWI	GGATC	3 cut(s)	25, 896, 909
AcoI	YGGCCR	1 cut(s)	1647
AcsI	RAATTY	5 cut(s)	419, 451, 697, 947, 1223
AcuI	CTGAAG	4 cut(s)	480, 804, 962, 1536
AcvI	CACGTG	2 cut(s)	265, 1603
AcyI	GRCGYC	2 cut(s)	1269, 1461
AdeI	CACNNNGTG	2 cut(s)	268, 751
AfaI	GTAC	5 cut(s)	626, 848, 1059, 1088, 1385
AfiI	CCNNNNNNNGG	5 cut(s)	578, 1315, 1527, 1671, 1672
AflII	CTTAAG	1 cut(s)	197
AflIII	ACRYGT	1 cut(s)	262
AgeI	ACCGGT	2 cut(s)	347, 1630
AhlI	ACTAGT	2 cut(s)	53, 719
AjiI	CACGTC	1 cut(s)	340
AjnI	CCWGG	2 cut(s)	997, 1129
AjuI	GAANNNNNNNTTGG	4 cut(s)	939, 971, 1468, 1500
Alw21I	GWGCWC	2 cut(s)	1329, 1908
Alw26I	GTCTC	4 cut(s)	129, 875, 1102, 1345
Alw44I	GTGCAC	1 cut(s)	1325
AlwI	GGATC	3 cut(s)	25, 896, 909
Ama87I	CYCGRG	1 cut(s)	1090
AoxI	GGCC	4 cut(s)	569, 742, 1284, 1647
ApaLI	GTGCAC	1 cut(s)	1325
ApeKI	GCWGC	2 cut(s)	42, 1153
ApoI	RAATTY	5 cut(s)	419, 451, 697, 947, 1223
ArsI	GACNNNNNNTTYG	2 cut(s)	1406, 1438
AseI	ATTAAT	1 cut(s)	1122
AsiGI	ACCGGT	2 cut(s)	347, 1630
Asp718I	GGTACC	1 cut(s)	1057
AspLEI	GCGC	1 cut(s)	1463
AsuC2I	CCSGG	1 cut(s)	257
AvaI	CYCGRG	1 cut(s)	1090
BaeGI	GKGCMC	2 cut(s)	262, 1329
BaeI	ACNNNNGTAYC	2 cut(s)	1078, 1111
BalI	TGGCCA	1 cut(s)	1649
BamHI	GGATCC	1 cut(s)	901
BanI	GGYRCC	4 cut(s)	314, 1057, 1238, 1460
BanII	GRGCYC	1 cut(s)	1908
BauI	CACGAG	1 cut(s)	299
BbrPI	CACGTG	2 cut(s)	265, 1603
BbsI	GAAGAC	2 cut(s)	1169, 1589
Bbv12I	GWGCWC	2 cut(s)	1329, 1908
BbvI	GCAGC	2 cut(s)	29, 1165
BccI	CCATC	7 cut(s)	72, 991, 1013, 1034, 1174, 1763, 1854
BceAI	ACGGC	3 cut(s)	1343, 1474, 1550
BciT130I	CCWGG	2 cut(s)	999, 1131
BclI	TGATCA	1 cut(s)	703
BcnI	CCSGG	1 cut(s)	257
BcoDI	GTCTC	4 cut(s)	129, 875, 1102, 1345
BcuI	ACTAGT	2 cut(s)	53, 719
BfaI	CTAG	9 cut(s)	23, 54, 71, 393, 441, 720, 1391, 1527, 1587
BfmI	CTRYAG	1 cut(s)	538
BfoI	RGCGCY	1 cut(s)	1464
BfrI	CTTAAG	1 cut(s)	197
BisI	GCNGC	4 cut(s)	43, 1154, 1464, 1551
BlpI	GCTNAGC	2 cut(s)	1774, 1907
BlsI	GCNGC	4 cut(s)	44, 1155, 1465, 1552
Bme1390I	CCNGG	3 cut(s)	257, 999, 1131
BmeT110I	CYCGRG	1 cut(s)	1090
BmgBI	CACGTC	1 cut(s)	340
BmiI	GGNNCC	6 cut(s)	316, 903, 1059, 1240, 1462, 1757
BmrFI	CCNGG	3 cut(s)	257, 999, 1131
BmrI	ACTGGG	1 cut(s)	775
BmsI	GCATC	1 cut(s)	820
BmuI	ACTGGG	1 cut(s)	775
BoxI	GACNNNNGTC	1 cut(s)	1268
BpiI	GAAGAC	2 cut(s)	1169, 1589
BpmI	CTGGAG	2 cut(s)	1053, 1755
Bpu1102I	GCTNAGC	2 cut(s)	1774, 1907
BpuEI	CTTGAG	1 cut(s)	202
BpuMI	CCSGG	1 cut(s)	257
BsaAI	YACGTR	3 cut(s)	265, 1383, 1603
BsaBI	GATNNNNATC	1 cut(s)	614
BsaHI	GRCGYC	2 cut(s)	1269, 1461
BsaI	GGTCTC	1 cut(s)	875
BsaJI	CCNNGG	5 cut(s)	1061, 1129, 1521, 1759, 1891
BsaWI	WCCGGW	2 cut(s)	347, 1630
BsaXI	ACNNNNNCTCC	4 cut(s)	537, 567, 1323, 1353
Bsc4I	CCNNNNNNNGG	5 cut(s)	578, 1315, 1527, 1671, 1672
Bse118I	RCCGGY	3 cut(s)	347, 1611, 1630
Bse1I	ACTGG	3 cut(s)	770, 1270, 1627
Bse3DI	GCAATG	3 cut(s)	44, 706, 1110
Bse8I	GATNNNNATC	1 cut(s)	614
BseBI	CCWGG	2 cut(s)	999, 1131
BseDI	CCNNGG	5 cut(s)	1061, 1129, 1521, 1759, 1891
BseGI	GGATG	5 cut(s)	64, 604, 1024, 1185, 1851
BseJI	GATNNNNATC	1 cut(s)	614
BseLI	CCNNNNNNNGG	5 cut(s)	578, 1315, 1527, 1671, 1672
BseMI	GCAATG	3 cut(s)	44, 706, 1110
BseMII	CTCAG	5 cut(s)	81, 94, 870, 1356, 1921
BseNI	ACTGG	3 cut(s)	770, 1270, 1627
BseRI	GAGGAG	1 cut(s)	558
BseSI	GKGCMC	2 cut(s)	262, 1329
BseXI	GCAGC	2 cut(s)	29, 1165
BseYI	CCCAGC	1 cut(s)	1873
Bsh1236I	CGCG	1 cut(s)	1466
BshFI	GGCC	4 cut(s)	571, 744, 1286, 1649
BshNI	GGYRCC	4 cut(s)	314, 1057, 1238, 1460
BshTI	ACCGGT	2 cut(s)	347, 1630
BsiHKAI	GWGCWC	2 cut(s)	1329, 1908
BsiHKCI	CYCGRG	1 cut(s)	1090
BsiSI	CCGG	5 cut(s)	179, 256, 348, 1612, 1631
BslI	CCNNNNNNNGG	5 cut(s)	578, 1315, 1527, 1671, 1672
BsmAI	GTCTC	4 cut(s)	129, 875, 1102, 1345
BsmI	GAATGC	2 cut(s)	471, 536
BsnI	GGCC	4 cut(s)	571, 744, 1286, 1649
Bso31I	GGTCTC	1 cut(s)	875
BsoBI	CYCGRG	1 cut(s)	1090
Bsp1286I	GDGCHC	3 cut(s)	262, 1329, 1908
Bsp1407I	TGTACA	1 cut(s)	624
Bsp143I	GATC	6 cut(s)	30, 93, 615, 703, 901, 962
Bsp1720I	GCTNAGC	2 cut(s)	1774, 1907
Bsp19I	CCATGG	2 cut(s)	1759, 1891
BspACI	CCGC	6 cut(s)	243, 253, 279, 1464, 1506, 1550
BspANI	GGCC	4 cut(s)	571, 744, 1286, 1649
BspCNI	CTCAG	5 cut(s)	82, 93, 871, 1355, 1920
BspFNI	CGCG	1 cut(s)	1466
BspLI	GGNNCC	6 cut(s)	316, 903, 1059, 1240, 1462, 1757
BspPI	GGATC	3 cut(s)	25, 896, 909
BspQI	GCTCTTC	2 cut(s)	168, 981
BspT107I	GGYRCC	4 cut(s)	314, 1057, 1238, 1460
BspTI	CTTAAG	1 cut(s)	197
BspTNI	GGTCTC	1 cut(s)	875
BsrDI	GCAATG	3 cut(s)	44, 706, 1110
BsrFI	RCCGGY	3 cut(s)	347, 1611, 1630
BsrGI	TGTACA	1 cut(s)	624
BsrI	ACTGG	3 cut(s)	770, 1270, 1627
BssAI	RCCGGY	3 cut(s)	347, 1611, 1630
BssECI	CCNNGG	5 cut(s)	1061, 1129, 1521, 1759, 1891
BssMI	GATC	6 cut(s)	30, 93, 615, 703, 901, 962
BssNAI	GTATAC	1 cut(s)	1833
BssNI	GRCGYC	2 cut(s)	1269, 1461
BssSI	CACGAG	1 cut(s)	299
BssT1I	CCWWGG	3 cut(s)	1061, 1759, 1891
Bst1107I	GTATAC	1 cut(s)	1833
Bst2BI	CACGAG	1 cut(s)	299
Bst2UI	CCWGG	2 cut(s)	999, 1131
Bst4CI	ACNGT	6 cut(s)	7, 356, 1192, 1354, 1409, 1837
Bst6I	CTCTTC	4 cut(s)	144, 168, 981, 1647
BstACI	GRCGYC	2 cut(s)	1269, 1461
BstAFI	CTTAAG	1 cut(s)	197
BstAUI	TGTACA	1 cut(s)	624
BstBAI	YACGTR	3 cut(s)	265, 1383, 1603
BstDEI	CTNAG	8 cut(s)	80, 90, 310, 879, 1342, 1543, 1774, 1907
BstDSI	CCRYGG	2 cut(s)	1759, 1891
BstEII	GGTNACC	1 cut(s)	1607
BstF5I	GGATG	5 cut(s)	64, 604, 1024, 1185, 1851
BstFNI	CGCG	1 cut(s)	1466
BstH2I	RGCGCY	1 cut(s)	1464
BstHHI	GCGC	1 cut(s)	1463
BstKTI	GATC	6 cut(s)	33, 96, 618, 706, 904, 965
BstMAI	GTCTC	4 cut(s)	129, 875, 1102, 1345
BstMBI	GATC	6 cut(s)	30, 93, 615, 703, 901, 962
BstMWI	GCNNNNNNNGC	2 cut(s)	1266, 1460
BstNI	CCWGG	2 cut(s)	999, 1131
BstNSI	RCATGY	1 cut(s)	875
BstPAI	GACNNNNGTC	1 cut(s)	1268
BstPI	GGTNACC	1 cut(s)	1607
BstSCI	CCNGG	3 cut(s)	255, 997, 1129
BstSFI	CTRYAG	1 cut(s)	538
BstSLI	GKGCMC	2 cut(s)	262, 1329
BstUI	CGCG	1 cut(s)	1466
BstV1I	GCAGC	2 cut(s)	29, 1165
BstV2I	GAAGAC	2 cut(s)	1169, 1589
BstX2I	RGATCY	1 cut(s)	901
BstXI	CCANNNNNNTGG	1 cut(s)	595
BstYI	RGATCY	1 cut(s)	901
BstZ17I	GTATAC	1 cut(s)	1833
BsuRI	GGCC	4 cut(s)	571, 744, 1286, 1649
BtgI	CCRYGG	2 cut(s)	1759, 1891
BtrI	CACGTC	1 cut(s)	340
BtsCI	GGATG	5 cut(s)	64, 604, 1024, 1185, 1851
BtsIMutI	CAGTG	4 cut(s)	627, 666, 1620, 1842
CfoI	GCGC	1 cut(s)	1463
Cfr10I	RCCGGY	3 cut(s)	347, 1611, 1630
CseI	GACGC	3 cut(s)	980, 1258, 1455
Csp6I	GTAC	5 cut(s)	625, 847, 1058, 1087, 1384
CspAI	ACCGGT	2 cut(s)	347, 1630
CspCI	CAANNNNNGTGG	2 cut(s)	1216, 1251
CviAII	CATG	6 cut(s)	776, 872, 898, 1760, 1879, 1892
CviQI	GTAC	5 cut(s)	625, 847, 1058, 1087, 1384
DdeI	CTNAG	8 cut(s)	80, 90, 310, 879, 1342, 1543, 1774, 1907
DinI	GGCGCC	1 cut(s)	1462
DpnI	GATC	6 cut(s)	32, 95, 617, 705, 903, 964
DpnII	GATC	6 cut(s)	30, 93, 615, 703, 901, 962
DraI	TTTAAA	1 cut(s)	522
DraIII	CACNNNGTG	2 cut(s)	268, 751
EaeI	YGGCCR	1 cut(s)	1647
Eam1104I	CTCTTC	4 cut(s)	144, 168, 981, 1647
EarI	CTCTTC	4 cut(s)	144, 168, 981, 1647
EciI	GGCGGA	1 cut(s)	232
Ecl136II	GAGCTC	1 cut(s)	1906
Eco130I	CCWWGG	3 cut(s)	1061, 1759, 1891
Eco24I	GRGCYC	1 cut(s)	1908
Eco31I	GGTCTC	1 cut(s)	875
Eco32I	GATATC	1 cut(s)	169
Eco53kI	GAGCTC	1 cut(s)	1906
Eco57I	CTGAAG	4 cut(s)	480, 804, 962, 1536
Eco72I	CACGTG	2 cut(s)	265, 1603
Eco88I	CYCGRG	1 cut(s)	1090
Eco91I	GGTNACC	1 cut(s)	1607
EcoICRI	GAGCTC	1 cut(s)	1906
EcoO65I	GGTNACC	1 cut(s)	1607
EcoRI	GAATTC	1 cut(s)	1223
EcoRII	CCWGG	2 cut(s)	997, 1129
EcoRV	GATATC	1 cut(s)	169
EcoT14I	CCWWGG	3 cut(s)	1061, 1759, 1891
EcoT38I	GRGCYC	1 cut(s)	1908
EgeI	GGCGCC	1 cut(s)	1462
EheI	GGCGCC	1 cut(s)	1462
ErhI	CCWWGG	3 cut(s)	1061, 1759, 1891
FaeI	CATG	6 cut(s)	779, 875, 901, 1763, 1882, 1895
FalI	AAGNNNNNCTT	4 cut(s)	180, 212, 502, 534
FatI	CATG	6 cut(s)	775, 871, 897, 1759, 1878, 1891
FauI	CCCGC	1 cut(s)	260
FbaI	TGATCA	1 cut(s)	703
FblI	GTMKAC	2 cut(s)	342, 1832
Fnu4HI	GCNGC	4 cut(s)	43, 1154, 1464, 1551
FokI	GGATG	5 cut(s)	51, 611, 1031, 1192, 1838
FriOI	GRGCYC	1 cut(s)	1908
Fsp4HI	GCNGC	4 cut(s)	43, 1154, 1464, 1551
FspBI	CTAG	9 cut(s)	23, 54, 71, 393, 441, 720, 1391, 1527, 1587
GlaI	GCGC	1 cut(s)	1462
GluI	GCNGC	4 cut(s)	43, 1154, 1464, 1551
GsaI	CCCAGC	1 cut(s)	1877
GsuI	CTGGAG	2 cut(s)	1053, 1755
HaeII	RGCGCY	1 cut(s)	1464
HaeIII	GGCC	4 cut(s)	571, 744, 1286, 1649
HapII	CCGG	5 cut(s)	179, 256, 348, 1612, 1631
HgaI	GACGC	3 cut(s)	980, 1258, 1455
HhaI	GCGC	1 cut(s)	1463
Hin1I	GRCGYC	2 cut(s)	1269, 1461
Hin1II	CATG	6 cut(s)	779, 875, 901, 1763, 1882, 1895
Hin6I	GCGC	1 cut(s)	1461
HinP1I	GCGC	1 cut(s)	1461
HincII	GTYRAC	2 cut(s)	1363, 1405
HindII	GTYRAC	2 cut(s)	1363, 1405
HindIII	AAGCTT	1 cut(s)	398
HinfI	GANTC	6 cut(s)	582, 1165, 1570, 1842, 1899, 1928
HpaI	GTTAAC	1 cut(s)	1363
HpaII	CCGG	5 cut(s)	179, 256, 348, 1612, 1631
Hpy166II	GTNNAC	8 cut(s)	292, 307, 343, 627, 1327, 1363, 1405, 1833
Hpy188I	TCNGA	6 cut(s)	120, 460, 703, 880, 1345, 1723
Hpy188III	TCNNGA	4 cut(s)	424, 925, 1214, 1391
Hpy8I	GTNNAC	8 cut(s)	292, 307, 343, 627, 1327, 1363, 1405, 1833
Hpy99I	CGWCG	2 cut(s)	974, 1403
HpyAV	CCTTC	5 cut(s)	178, 734, 1048, 1276, 1483
HpyCH4III	ACNGT	6 cut(s)	7, 356, 1192, 1354, 1409, 1837
HpyCH4IV	ACGT	7 cut(s)	264, 321, 339, 1323, 1382, 1401, 1602
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1266, 1460
HpyF3I	CTNAG	8 cut(s)	80, 90, 310, 879, 1342, 1543, 1774, 1907
HpySE526I	ACGT	7 cut(s)	264, 321, 339, 1323, 1382, 1401, 1602
Hsp92I	GRCGYC	2 cut(s)	1269, 1461
Hsp92II	CATG	6 cut(s)	779, 875, 901, 1763, 1882, 1895
HspAI	GCGC	1 cut(s)	1461
KasI	GGCGCC	1 cut(s)	1460
KpnI	GGTACC	1 cut(s)	1061
Ksp22I	TGATCA	1 cut(s)	703
KspAI	GTTAAC	1 cut(s)	1363
Kzo9I	GATC	6 cut(s)	30, 93, 615, 703, 901, 962
LguI	GCTCTTC	2 cut(s)	168, 981
LmnI	GCTCC	4 cut(s)	1034, 1331, 1755, 1785
Lsp1109I	GCAGC	2 cut(s)	29, 1165
LweI	GCATC	1 cut(s)	820
MaeI	CTAG	9 cut(s)	23, 54, 71, 393, 441, 720, 1391, 1527, 1587
MaeII	ACGT	7 cut(s)	264, 321, 339, 1323, 1382, 1401, 1602
MaeIII	GTNAC	9 cut(s)	350, 1196, 1409, 1467, 1495, 1607, 1618, 1633, 1702
MalI	GATC	6 cut(s)	32, 95, 617, 705, 903, 964
MboI	GATC	6 cut(s)	30, 93, 615, 703, 901, 962
MfeI	CAATTG	4 cut(s)	483, 573, 987, 1803
MflI	RGATCY	1 cut(s)	901
MhlI	GDGCHC	3 cut(s)	262, 1329, 1908
MlsI	TGGCCA	1 cut(s)	1649
MluNI	TGGCCA	1 cut(s)	1649
Mly113I	GGCGCC	1 cut(s)	1461
MlyI	GAGTC	2 cut(s)	1159, 1937
MmeI	TCCRAC	1 cut(s)	357
Mox20I	TGGCCA	1 cut(s)	1649
MscI	TGGCCA	1 cut(s)	1649
MseI	TTAA	5 cut(s)	198, 521, 1122, 1245, 1362
MslI	CAYNNNNRTG	2 cut(s)	593, 1764
Msp20I	TGGCCA	1 cut(s)	1649
MspCI	CTTAAG	1 cut(s)	197
MspI	CCGG	5 cut(s)	179, 256, 348, 1612, 1631
MspR9I	CCNGG	3 cut(s)	257, 999, 1131
MunI	CAATTG	4 cut(s)	483, 573, 987, 1803
Mva1269I	GAATGC	2 cut(s)	471, 536
MvaI	CCWGG	2 cut(s)	999, 1131
MvnI	CGCG	1 cut(s)	1466
MwoI	GCNNNNNNNGC	2 cut(s)	1266, 1460
NarI	GGCGCC	1 cut(s)	1461
NciI	CCSGG	1 cut(s)	257
NcoI	CCATGG	2 cut(s)	1759, 1891
NdeII	GATC	6 cut(s)	30, 93, 615, 703, 901, 962
NlaIII	CATG	6 cut(s)	779, 875, 901, 1763, 1882, 1895
NlaIV	GGNNCC	6 cut(s)	316, 903, 1059, 1240, 1462, 1757
NmeAIII	GCCGAG	2 cut(s)	1518, 1546
NmuCI	GTSAC	3 cut(s)	1467, 1618, 1702
NspI	RCATGY	1 cut(s)	875
PciSI	GCTCTTC	2 cut(s)	168, 981
PctI	GAATGC	2 cut(s)	471, 536
PfeI	GAWTC	4 cut(s)	582, 1570, 1842, 1899
PfoI	TCCNGGA	1 cut(s)	997
PinAI	ACCGGT	2 cut(s)	347, 1630
PkrI	GCNGC	4 cut(s)	44, 1155, 1465, 1552
PleI	GAGTC	2 cut(s)	1159, 1936
PluTI	GGCGCC	1 cut(s)	1464
PmaCI	CACGTG	2 cut(s)	265, 1603
PmlI	CACGTG	2 cut(s)	265, 1603
PpsI	GAGTC	2 cut(s)	1159, 1936
Ppu21I	YACGTR	3 cut(s)	265, 1383, 1603
PshAI	GACNNNNGTC	1 cut(s)	1268
PshBI	ATTAAT	1 cut(s)	1122
Psp124BI	GAGCTC	1 cut(s)	1908
Psp1406I	AACGTT	1 cut(s)	321
Psp6I	CCWGG	2 cut(s)	997, 1129
PspCI	CACGTG	2 cut(s)	265, 1603
PspEI	GGTNACC	1 cut(s)	1607
PspFI	CCCAGC	1 cut(s)	1873
PspGI	CCWGG	2 cut(s)	997, 1129
PspN4I	GGNNCC	6 cut(s)	316, 903, 1059, 1240, 1462, 1757
PsuI	RGATCY	1 cut(s)	901
RsaI	GTAC	5 cut(s)	626, 848, 1059, 1088, 1385
RsaNI	GTAC	5 cut(s)	625, 847, 1058, 1087, 1384
RseI	CAYNNNNRTG	2 cut(s)	593, 1764
SacI	GAGCTC	1 cut(s)	1908
SapI	GCTCTTC	2 cut(s)	168, 981
SaqAI	TTAA	5 cut(s)	198, 521, 1122, 1245, 1362
SatI	GCNGC	4 cut(s)	43, 1154, 1464, 1551
Sau3AI	GATC	6 cut(s)	30, 93, 615, 703, 901, 962
SchI	GAGTC	2 cut(s)	1159, 1937
ScrFI	CCNGG	3 cut(s)	257, 999, 1131
SduI	GDGCHC	3 cut(s)	262, 1329, 1908
SfaNI	GCATC	1 cut(s)	820
SfcI	CTRYAG	1 cut(s)	538
SfoI	GGCGCC	1 cut(s)	1462
SmiMI	CAYNNNNRTG	2 cut(s)	593, 1764
SmlI	CTYRAG	2 cut(s)	197, 217
SmoI	CTYRAG	2 cut(s)	197, 217
SpeI	ACTAGT	2 cut(s)	53, 719
SsiI	CCGC	6 cut(s)	243, 253, 279, 1464, 1506, 1550
SspDI	GGCGCC	1 cut(s)	1460
SspMI	CTAG	9 cut(s)	23, 54, 71, 393, 441, 720, 1391, 1527, 1587
SstI	GAGCTC	1 cut(s)	1908
StyD4I	CCNGG	3 cut(s)	255, 997, 1129
StyI	CCWWGG	3 cut(s)	1061, 1759, 1891
TaaI	ACNGT	6 cut(s)	7, 356, 1192, 1354, 1409, 1837
TaiI	ACGT	7 cut(s)	267, 324, 342, 1326, 1385, 1404, 1605
TaqI	TCGA	5 cut(s)	165, 171, 274, 1398, 1902
TatI	WGTACW	2 cut(s)	624, 846
TauI	GCSGC	2 cut(s)	1466, 1553
TfiI	GAWTC	4 cut(s)	582, 1570, 1842, 1899
Tru1I	TTAA	5 cut(s)	198, 521, 1122, 1245, 1362
Tru9I	TTAA	5 cut(s)	198, 521, 1122, 1245, 1362
TscAI	CASTG	4 cut(s)	634, 673, 1627, 1842
TseFI	GTSAC	3 cut(s)	1467, 1618, 1702
TseI	GCWGC	2 cut(s)	42, 1153
Tsp45I	GTSAC	3 cut(s)	1467, 1618, 1702
TspDTI	ATGAA	5 cut(s)	146, 626, 764, 927, 1454
TspGWI	ACGGA	2 cut(s)	1331, 1344
TspRI	CASTG	4 cut(s)	634, 673, 1627, 1842
Vha464I	CTTAAG	1 cut(s)	197
VneI	GTGCAC	1 cut(s)	1325
VspI	ATTAAT	1 cut(s)	1122
XapI	RAATTY	5 cut(s)	419, 451, 697, 947, 1223
XbaI	TCTAGA	1 cut(s)	1390
XceI	RCATGY	1 cut(s)	875
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1766
XmiI	GTMKAC	2 cut(s)	342, 1832
XspI	CTAG	9 cut(s)	23, 54, 71, 393, 441, 720, 1391, 1527, 1587

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.