Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0006136

Physical Location & Seq

Genomic Coordinates Reverse (-)

42060757 .. 42061903

Gene Structure 1147 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG316100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGGATCCTCCCAATGAATGGTATTTCAGGACTTTTATGGATATAGGAGAATTTGGGTTTGGGAGATCAGCTGACGCTCTTCAGCCATTAATTGATTGTCCCGGAAATGCTGAATATGTAGATGGGTTTATGGCTGGGGCTGATGGGGAGGTACAGAAGGTACCAAGGGCTATTTGCATTTTTGAATTGTACTCAGGTGATATTACAATGAGACATACTGAAATTAATGTACCTAGCAAATTGACCAATACAGTGAGGCCGAGTACCCGACCACAAACACCAAATGTTCTTCTCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005623 GO:0007154 GO:0007165 GO:0008131 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009888 GO:0009987 GO:0010033 GO:0010035 GO:0010087 GO:0010089 GO:0010941 GO:0016491 GO:0016638 GO:0016641 GO:0023052 GO:0030312 GO:0032502 GO:0032870 GO:0042221 GO:0043067 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0052597 GO:0055114 GO:0065007 GO:0070887 GO:0071229 GO:0071241 GO:0071310 GO:0071395 GO:0071495 GO:0071944 GO:0090059 GO:0097184 GO:0097185 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00260 ko00350 ko00360 ko00410 ko00950 ko00960 ko01100 ko01110 map00260 map00350 map00360 map00410 map00950 map00960 map01100 map01110

Pfam Domains

Protein Families

Cu_amine_oxid Cu_amine_oxidN2 Cu_amine_oxidN3

Protein Analysis

99

Amino Acids

11.07

Weight (kDa)

4.78

Isoelectric Point (pI)

30.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_amine_oxid	PF01179	1 - 79	8.6e-21	Copper amine oxidase, enzyme domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0006136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14940
fragaria_vesca	FvH4_4g15350 FvH4_4g15390
malus_domestica	MD13G1191800.v1.1
prunus_persica	Prupe.1G012100_v2.0.a1 Prupe.1G012100_v2.0.a1
pyrus_communis	pycom13g16440
rosa_chinensis	RchiOBHm_Chr4g0416411 RchiOBHm_Chr5g0045871
rosa_laevigata	RLG00000007984 RLG00000034395
rosa_multiflora	Rmu_sc0001488.1_g000020
rosa_roxburghii	Rroxscaffold_1G00035130 Rroxscaffold_1G00035220 Rroxscaffold_5G00360240
rosa_rugosa	Rorug04G0141600 Rorug04G0141700 Rorug05G0226600
rosa_samantha	Rh4AG204000 Rh4BG201400 Rh4CG215200 Rh4DG201300 Rh5BG316100 Rh5DG326400
rosa_wichuraiana	Rw0G018920 Rw4G017270 Rw5G028820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	160
AccB1I	GGYRCC	1 cut(s)	160
AccB7I	CCANNNNNTGG	1 cut(s)	18
AclWI	GGATC	1 cut(s)	12
AcsI	RAATTY	1 cut(s)	50
AcuI	CTGAAG	1 cut(s)	65
AfaI	GTAC	5 cut(s)	153, 162, 191, 231, 265
AfiI	CCNNNNNNNGG	1 cut(s)	18
AgsI	TTSAA	1 cut(s)	185
AjuI	GAANNNNNNNTTGG	2 cut(s)	42, 74
AluBI	AGCT	1 cut(s)	71
AluI	AGCT	1 cut(s)	71
Alw26I	GTCTC	1 cut(s)	205
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	1 cut(s)	257
ApoI	RAATTY	1 cut(s)	50
AseI	ATTAAT	2 cut(s)	89, 225
Asp718I	GGTACC	1 cut(s)	160
AsuC2I	CCSGG	1 cut(s)	102
AsuHPI	GGTGA	1 cut(s)	209
BamHI	GGATCC	1 cut(s)	4
BanI	GGYRCC	1 cut(s)	160
BccI	CCATC	2 cut(s)	116, 137
BcnI	CCSGG	1 cut(s)	102
BcoDI	GTCTC	1 cut(s)	205
BfaI	CTAG	1 cut(s)	234
Bme1390I	CCNGG	1 cut(s)	102
BmiI	GGNNCC	2 cut(s)	6, 162
BmrFI	CCNGG	1 cut(s)	102
BpuMI	CCSGG	1 cut(s)	102
BsaJI	CCNNGG	1 cut(s)	164
Bsc4I	CCNNNNNNNGG	1 cut(s)	18
BseDI	CCNNGG	1 cut(s)	164
BseLI	CCNNNNNNNGG	1 cut(s)	18
BseMII	CTCAG	1 cut(s)	207
BseYI	CCCAGC	1 cut(s)	134
BshFI	GGCC	1 cut(s)	259
BshNI	GGYRCC	1 cut(s)	160
BsiSI	CCGG	1 cut(s)	102
BslFI	GGGAC	1 cut(s)	84
BslI	CCNNNNNNNGG	1 cut(s)	18
BsmAI	GTCTC	1 cut(s)	205
BsmFI	GGGAC	1 cut(s)	84
BsnI	GGCC	1 cut(s)	259
Bsp143I	GATC	2 cut(s)	4, 65
BspANI	GGCC	1 cut(s)	259
BspCNI	CTCAG	1 cut(s)	206
BspLI	GGNNCC	2 cut(s)	6, 162
BspPI	GGATC	1 cut(s)	12
BspQI	GCTCTTC	1 cut(s)	84
BspT107I	GGYRCC	1 cut(s)	160
BssECI	CCNNGG	1 cut(s)	164
BssMI	GATC	2 cut(s)	4, 65
BssT1I	CCWWGG	1 cut(s)	164
Bst4CI	ACNGT	1 cut(s)	253
Bst6I	CTCTTC	1 cut(s)	84
BstDEI	CTNAG	1 cut(s)	193
BstKTI	GATC	2 cut(s)	7, 68
BstMAI	GTCTC	1 cut(s)	205
BstMBI	GATC	2 cut(s)	4, 65
BstSCI	CCNGG	1 cut(s)	100
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BsuRI	GGCC	1 cut(s)	259
BtsIMutI	CAGTG	1 cut(s)	258
CseI	GACGC	1 cut(s)	83
Csp6I	GTAC	5 cut(s)	152, 161, 190, 230, 264
CviJI	RGCY	6 cut(s)	71, 85, 134, 140, 170, 259
CviKI_1	RGCY	6 cut(s)	71, 85, 134, 140, 170, 259
CviQI	GTAC	5 cut(s)	152, 161, 190, 230, 264
DdeI	CTNAG	1 cut(s)	193
DpnI	GATC	2 cut(s)	6, 67
DpnII	GATC	2 cut(s)	4, 65
Eam1104I	CTCTTC	1 cut(s)	84
EarI	CTCTTC	1 cut(s)	84
Eco130I	CCWWGG	1 cut(s)	164
Eco57I	CTGAAG	1 cut(s)	65
EcoT14I	CCWWGG	1 cut(s)	164
ErhI	CCWWGG	1 cut(s)	164
FaiI	YATR	5 cut(s)	38, 44, 117, 131, 216
FaqI	GGGAC	1 cut(s)	84
FspBI	CTAG	1 cut(s)	234
GsaI	CCCAGC	1 cut(s)	138
HaeIII	GGCC	1 cut(s)	259
HapII	CCGG	1 cut(s)	102
HgaI	GACGC	1 cut(s)	83
HpaII	CCGG	1 cut(s)	102
HphI	GGTGA	1 cut(s)	209
Hpy188III	TCNNGA	1 cut(s)	28
HpyAV	CCTTC	1 cut(s)	151
HpyCH4III	ACNGT	1 cut(s)	253
HpyCH4V	TGCA	1 cut(s)	177
HpyF3I	CTNAG	1 cut(s)	193
KpnI	GGTACC	1 cut(s)	164
Kzo9I	GATC	2 cut(s)	4, 65
LguI	GCTCTTC	1 cut(s)	84
LpnPI	CCDG	4 cut(s)	13, 115, 120, 180
MaeI	CTAG	1 cut(s)	234
MalI	GATC	2 cut(s)	6, 67
MboI	GATC	2 cut(s)	4, 65
MboII	GAAGA	2 cut(s)	71, 281
MflI	RGATCY	1 cut(s)	4
MluCI	AATT	5 cut(s)	50, 90, 185, 222, 239
MnlI	CCTC	3 cut(s)	18, 142, 249
MseI	TTAA	2 cut(s)	89, 225
MspA1I	CMGCKG	1 cut(s)	71
MspI	CCGG	1 cut(s)	102
MspR9I	CCNGG	1 cut(s)	102
NciI	CCSGG	1 cut(s)	102
NdeII	GATC	2 cut(s)	4, 65
NlaIV	GGNNCC	2 cut(s)	6, 162
NmeAIII	GCCGAG	1 cut(s)	285
PciSI	GCTCTTC	1 cut(s)	84
PflMI	CCANNNNNTGG	1 cut(s)	18
PfoI	TCCNGGA	1 cut(s)	100
PshBI	ATTAAT	2 cut(s)	89, 225
PspFI	CCCAGC	1 cut(s)	134
PspN4I	GGNNCC	2 cut(s)	6, 162
PsuI	RGATCY	1 cut(s)	4
PvuII	CAGCTG	1 cut(s)	71
RsaI	GTAC	5 cut(s)	153, 162, 191, 231, 265
RsaNI	GTAC	5 cut(s)	152, 161, 190, 230, 264
SapI	GCTCTTC	1 cut(s)	84
SaqAI	TTAA	2 cut(s)	89, 225
Sau3AI	GATC	2 cut(s)	4, 65
ScrFI	CCNGG	1 cut(s)	102
SetI	ASST	5 cut(s)	73, 153, 162, 199, 235
SgeI	CNNG	9 cut(s)	40, 113, 114, 147, 177, 207, 246, 273, 279
Sse9I	AATT	5 cut(s)	50, 90, 185, 222, 239
SspMI	CTAG	1 cut(s)	234
StyD4I	CCNGG	1 cut(s)	100
StyI	CCWWGG	1 cut(s)	164
TaaI	ACNGT	1 cut(s)	253
TasI	AATT	5 cut(s)	50, 90, 185, 222, 239
TatI	WGTACW	1 cut(s)	189
Tru1I	TTAA	2 cut(s)	89, 225
Tru9I	TTAA	2 cut(s)	89, 225
TscAI	CASTG	1 cut(s)	258
TspDTI	ATGAA	1 cut(s)	30
TspRI	CASTG	1 cut(s)	258
Van91I	CCANNNNNTGG	1 cut(s)	18
VspI	ATTAAT	2 cut(s)	89, 225
XapI	RAATTY	1 cut(s)	50
XspI	CTAG	1 cut(s)	234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.