FvH4_4g17371

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0016307
Physical Location & Seq
Forward (+)
21293916 .. 21295667
1752 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g17371.t1

Sequence Viewer

Length: 606 bp
ATGGGATGTGGGGATTCAAAGCTCGCTGTTGCCACCAGCAATGCCATCCTGCGCCGCAAGAAATCCAATGCCGGGGAGGCCACTAAGAAGAGCAAAGACGTCGGAACAATCCCCGGAACCACCACGGATTGTGACAACAGTGTAGCACTCTCAAAGGGACAACAACAACAACAACAAAAAGCGCAAGAAGCAGCAGAATTTGTTAAAAAGGACAATGTAGGTGTTGGGGTGGCTGATGATGTGAAGGACATCAATGAAAACAAGAAGGAAGATGGAGGTGACAAAGAAATAATAGCCAAAGGTGACAACAAGGAGCATGAAGCCGGGAGATTGATAACATCTGAAGAGTCACCAAGGGATTTCTTTTCATCAAGAAAATTAGATGATGAAGGAATTGATGGGATTATTTCTGAGGGAAGATCTGGAACATCCGATTATTACACTCCGCGCCATGGACCTGGAAGCAAGGGAAACTTGTTCTTCAAGGTGGATGATCAGGAAAGCAAAGTTGTAGAGGAGGACAAAGAATTGTTGCCTGCTGCTGAAGAAACAAAACCAGCTGGTGATACGACGTCCTCAAAAGAAAATACAGAGAGGCTGCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

202

Amino Acids

21.69

Weight (kDa)

5.02

Isoelectric Point (pI)

37.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016307)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g17371
malus_domestica MD13G1172700.v1.1 MD16G1174200.v1.1
prunus_persica Prupe.1G140900_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0421301
rosa_laevigata RLG00000007699
rosa_multiflora Rmu_sc0004892.1_g000010 Rmu_sc0007721.1_g000001
rosa_roxburghii Rroxscaffold_5G00363530
rosa_rugosa Rorug04G0169200
rosa_samantha Rh4AG230600 Rh4BG233600 Rh4CG244800 Rh4DG229300
rosa_wichuraiana Rw4G020320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 102, 575
AccII CGCG 1 cut(s) 448
AciI CCGC 3 cut(s) 55, 446, 601
AcsI RAATTY 1 cut(s) 197
AcuI CTGAAG 2 cut(s) 363, 564
AcyI GRCGYC 2 cut(s) 99, 572
AfiI CCNNNNNNNGG 2 cut(s) 72, 452
AgsI TTSAA 2 cut(s) 18, 484
AjnI CCWGG 1 cut(s) 457
AluBI AGCT 2 cut(s) 22, 560
AluI AGCT 2 cut(s) 22, 560
AoxI GGCC 1 cut(s) 78
ApeKI GCWGC 3 cut(s) 191, 539, 598
ApoI RAATTY 1 cut(s) 197
AspLEI GCGC 3 cut(s) 54, 184, 450
AspS9I GGNCC 1 cut(s) 455
AsuC2I CCSGG 3 cut(s) 73, 114, 325
AsuHPI GGTGA 4 cut(s) 290, 314, 342, 575
AvaII GGWCC 1 cut(s) 455
BbvI GCAGC 3 cut(s) 203, 526, 585
BccI CCATC 3 cut(s) 53, 266, 392
BcgI CGANNNNNNTGC 2 cut(s) 82, 116
BciT130I CCWGG 1 cut(s) 459
BclI TGATCA 1 cut(s) 493
BcnI CCSGG 3 cut(s) 73, 114, 325
BglI GCCNNNNNGGC 1 cut(s) 77
BglII AGATCT 1 cut(s) 419
BisI GCNGC 4 cut(s) 55, 192, 540, 599
BlsI GCNGC 4 cut(s) 56, 193, 541, 600
Bme1390I CCNGG 4 cut(s) 73, 114, 325, 459
Bme18I GGWCC 1 cut(s) 455
BmgT120I GGNCC 1 cut(s) 455
BmiI GGNNCC 1 cut(s) 118
BmrFI CCNGG 4 cut(s) 73, 114, 325, 459
BpuMI CCSGG 3 cut(s) 73, 114, 325
BsaHI GRCGYC 2 cut(s) 99, 572
BsaJI CCNNGG 5 cut(s) 72, 112, 123, 353, 451
Bsc4I CCNNNNNNNGG 2 cut(s) 72, 452
Bse3DI GCAATG 1 cut(s) 46
BseBI CCWGG 1 cut(s) 459
BseDI CCNNGG 5 cut(s) 72, 112, 123, 353, 451
BseGI GGATG 4 cut(s) 11, 45, 428, 496
BseLI CCNNNNNNNGG 2 cut(s) 72, 452
BseMI GCAATG 1 cut(s) 46
BseMII CTCAG 1 cut(s) 402
BseRI GAGGAG 1 cut(s) 530
BseXI GCAGC 3 cut(s) 203, 526, 585
Bsh1236I CGCG 1 cut(s) 448
BshFI GGCC 1 cut(s) 80
BsiSI CCGG 3 cut(s) 72, 114, 324
BslFI GGGAC 1 cut(s) 171
BslI CCNNNNNNNGG 2 cut(s) 72, 452
BsmFI GGGAC 1 cut(s) 171
BsnI GGCC 1 cut(s) 80
Bsp143I GATC 2 cut(s) 419, 493
Bsp19I CCATGG 1 cut(s) 451
BspACI CCGC 3 cut(s) 55, 446, 601
BspANI GGCC 1 cut(s) 80
BspCNI CTCAG 1 cut(s) 403
BspFNI CGCG 1 cut(s) 448
BspLI GGNNCC 1 cut(s) 118
BspQI GCTCTTC 1 cut(s) 83
BsrDI GCAATG 1 cut(s) 46
BssECI CCNNGG 5 cut(s) 72, 112, 123, 353, 451
BssMI GATC 2 cut(s) 419, 493
BssNI GRCGYC 2 cut(s) 99, 572
BssT1I CCWWGG 2 cut(s) 353, 451
Bst2UI CCWGG 1 cut(s) 459
Bst4CI ACNGT 1 cut(s) 140
Bst6I CTCTTC 2 cut(s) 83, 339
BstACI GRCGYC 2 cut(s) 99, 572
BstC8I GCNNGC 2 cut(s) 24, 537
BstDEI CTNAG 2 cut(s) 84, 411
BstDSI CCRYGG 2 cut(s) 123, 451
BstF5I GGATG 4 cut(s) 11, 45, 428, 496
BstFNI CGCG 1 cut(s) 448
BstHHI GCGC 3 cut(s) 54, 184, 450
BstKTI GATC 2 cut(s) 422, 496
BstMBI GATC 2 cut(s) 419, 493
BstMWI GCNNNNNNNGC 2 cut(s) 77, 188
BstNI CCWGG 1 cut(s) 459
BstSCI CCNGG 4 cut(s) 71, 112, 323, 457
BstUI CGCG 1 cut(s) 448
BstV1I GCAGC 3 cut(s) 203, 526, 585
BstX2I RGATCY 1 cut(s) 419
BstXI CCANNNNNNTGG 1 cut(s) 458
BstYI RGATCY 1 cut(s) 419
BsuRI GGCC 1 cut(s) 80
BtgI CCRYGG 2 cut(s) 123, 451
BtsCI GGATG 4 cut(s) 11, 45, 428, 496
BtsIMutI CAGTG 1 cut(s) 145
Cac8I GCNNGC 2 cut(s) 24, 537
CfoI GCGC 3 cut(s) 54, 184, 450
Cfr13I GGNCC 1 cut(s) 455
CviAII CATG 2 cut(s) 317, 452
CviJI RGCY 7 cut(s) 22, 80, 233, 296, 323, 560, 598
CviKI_1 RGCY 7 cut(s) 22, 80, 233, 296, 323, 560, 598
DdeI CTNAG 2 cut(s) 84, 411
DpnI GATC 2 cut(s) 421, 495
DpnII GATC 2 cut(s) 419, 493
Eam1104I CTCTTC 2 cut(s) 83, 339
EarI CTCTTC 2 cut(s) 83, 339
Eco130I CCWWGG 2 cut(s) 353, 451
Eco47I GGWCC 1 cut(s) 455
Eco57I CTGAAG 2 cut(s) 363, 564
EcoRII CCWGG 1 cut(s) 457
EcoT14I CCWWGG 2 cut(s) 353, 451
ErhI CCWWGG 2 cut(s) 353, 451
FaeI CATG 2 cut(s) 320, 455
FaiI YATR 2 cut(s) 318, 453
FalI AAGNNNNNCTT 2 cut(s) 458, 490
FaqI GGGAC 1 cut(s) 171
FatI CATG 2 cut(s) 316, 451
FbaI TGATCA 1 cut(s) 493
Fnu4HI GCNGC 4 cut(s) 55, 192, 540, 599
FokI GGATG 4 cut(s) 18, 32, 415, 503
Fsp4HI GCNGC 4 cut(s) 55, 192, 540, 599
GlaI GCGC 3 cut(s) 53, 183, 449
GluI GCNGC 4 cut(s) 55, 192, 540, 599
HaeIII GGCC 1 cut(s) 80
HapII CCGG 3 cut(s) 72, 114, 324
HhaI GCGC 3 cut(s) 54, 184, 450
Hin1I GRCGYC 2 cut(s) 99, 572
Hin1II CATG 2 cut(s) 320, 455
Hin6I GCGC 3 cut(s) 52, 182, 448
HinP1I GCGC 3 cut(s) 52, 182, 448
HinfI GANTC 2 cut(s) 14, 347
HpaII CCGG 3 cut(s) 72, 114, 324
HphI GGTGA 4 cut(s) 290, 314, 342, 575
Hpy188I TCNGA 4 cut(s) 104, 343, 412, 433
Hpy188III TCNNGA 3 cut(s) 372, 423, 497
Hpy99I CGWCG 2 cut(s) 104, 574
HpyAV CCTTC 3 cut(s) 238, 259, 383
HpyCH4III ACNGT 1 cut(s) 140
HpyCH4IV ACGT 2 cut(s) 99, 572
HpyF10VI GCNNNNNNNGC 2 cut(s) 77, 188
HpyF3I CTNAG 2 cut(s) 84, 411
HpySE526I ACGT 2 cut(s) 99, 572
Hsp92I GRCGYC 2 cut(s) 99, 572
Hsp92II CATG 2 cut(s) 320, 455
HspAI GCGC 3 cut(s) 52, 182, 448
Ksp22I TGATCA 1 cut(s) 493
Kzo9I GATC 2 cut(s) 419, 493
LguI GCTCTTC 1 cut(s) 83
LmnI GCTCC 1 cut(s) 313
Lsp1109I GCAGC 3 cut(s) 203, 526, 585
MaeII ACGT 2 cut(s) 99, 572
MaeIII GTNAC 4 cut(s) 131, 278, 302, 348
MalI GATC 2 cut(s) 421, 495
MboI GATC 2 cut(s) 419, 493
MboII GAAGA 6 cut(s) 100, 281, 356, 429, 472, 557
MflI RGATCY 1 cut(s) 419
MluCI AATT 4 cut(s) 197, 377, 393, 527
MlyI GAGTC 1 cut(s) 356
MmeI TCCRAC 1 cut(s) 82
MnlI CCTC 7 cut(s) 70, 269, 406, 508, 511, 586, 588
MseI TTAA 1 cut(s) 204
MspA1I CMGCKG 1 cut(s) 560
MspI CCGG 3 cut(s) 72, 114, 324
MspR9I CCNGG 4 cut(s) 73, 114, 325, 459
MvaI CCWGG 1 cut(s) 459
MvnI CGCG 1 cut(s) 448
MwoI GCNNNNNNNGC 2 cut(s) 77, 188
NciI CCSGG 3 cut(s) 73, 114, 325
NcoI CCATGG 1 cut(s) 451
NdeII GATC 2 cut(s) 419, 493
NlaIII CATG 2 cut(s) 320, 455
NlaIV GGNNCC 1 cut(s) 118
NmuCI GTSAC 4 cut(s) 131, 278, 302, 348
PciSI GCTCTTC 1 cut(s) 83
PfeI GAWTC 1 cut(s) 14
PkrI GCNGC 4 cut(s) 56, 193, 541, 600
PleI GAGTC 1 cut(s) 355
PpsI GAGTC 1 cut(s) 355
Psp6I CCWGG 1 cut(s) 457
PspGI CCWGG 1 cut(s) 457
PspN4I GGNNCC 1 cut(s) 118
PspPI GGNCC 1 cut(s) 455
PsuI RGATCY 1 cut(s) 419
PvuII CAGCTG 1 cut(s) 560
SapI GCTCTTC 1 cut(s) 83
SaqAI TTAA 1 cut(s) 204
SatI GCNGC 4 cut(s) 55, 192, 540, 599
Sau3AI GATC 2 cut(s) 419, 493
Sau96I GGNCC 1 cut(s) 455
SchI GAGTC 1 cut(s) 356
ScrFI CCNGG 4 cut(s) 73, 114, 325, 459
SetI ASST 9 cut(s) 24, 102, 223, 280, 304, 460, 489, 562, 575
SinI GGWCC 1 cut(s) 455
Sse9I AATT 4 cut(s) 197, 377, 393, 527
SsiI CCGC 3 cut(s) 55, 446, 601
StyD4I CCNGG 4 cut(s) 71, 112, 323, 457
StyI CCWWGG 2 cut(s) 353, 451
TaaI ACNGT 1 cut(s) 140
TaiI ACGT 2 cut(s) 102, 575
TasI AATT 4 cut(s) 197, 377, 393, 527
TauI GCSGC 1 cut(s) 57
TfiI GAWTC 1 cut(s) 14
Tru1I TTAA 1 cut(s) 204
Tru9I TTAA 1 cut(s) 204
TscAI CASTG 1 cut(s) 145
TseFI GTSAC 4 cut(s) 131, 278, 302, 348
TseI GCWGC 3 cut(s) 191, 539, 598
Tsp45I GTSAC 4 cut(s) 131, 278, 302, 348
TspDTI ATGAA 4 cut(s) 270, 333, 357, 402
TspGWI ACGGA 1 cut(s) 140
TspRI CASTG 1 cut(s) 145
VpaK11BI GGWCC 1 cut(s) 455
XapI RAATTY 1 cut(s) 197
ZraI GACGTC 2 cut(s) 100, 573
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.