Rmu_sc0007721.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007721.1
OG0016307
Physical Location & Seq
Reverse (-)
218 .. 835
618 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007721.1_g000001.1.cds

Sequence Viewer

Length: 618 bp
atgggctgtggggattcaaagctcgcggttgccaccagcaacgccctcctgcgcggcaagaaatccaatgccggggagaccaccaagaacagcaaagacatcaaaaccaaccacaaaaccgccacagattgcaacaacagcatagcaaactcaacgcaacaacaacaacatgagcaagaagctgtagcaagccgtggtgaaaaagttgttaataagaacaatgtggatgttatggtggctgatgaggtgaaggacattaatgaaaacaaaaaggaaaatggagatgacaaagaaataatggacaaaggtgacaacaaggttttagtggtttcggagcatgaagccgggagatttataacatctgaagactcaccaagggatttcttttcgtcaaggaaattagatgaggaagggattgatgggattatttctgagggaagatctggagcgtccgattattacactccacgccatggacctggaagtaagggaaactcgttcttcaaggtggatgaggaaagcaaagttgtagaggaggacaaagaattgttgcctgctgctgaagaaacaaaactagctgttgagacgacgccctcaacagaaaataaaggtttgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

205

Amino Acids

22.31

Weight (kDa)

4.96

Isoelectric Point (pI)

32.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016307)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g17371
malus_domestica MD13G1172700.v1.1 MD16G1174200.v1.1
prunus_persica Prupe.1G140900_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0421301
rosa_laevigata RLG00000007699
rosa_multiflora Rmu_sc0004892.1_g000010 Rmu_sc0007721.1_g000001
rosa_roxburghii Rroxscaffold_5G00363530
rosa_rugosa Rorug04G0169200
rosa_samantha Rh4AG230600 Rh4BG233600 Rh4CG244800 Rh4DG229300
rosa_wichuraiana Rw4G020320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 356
AccB7I CCANNNNNTGG 1 cut(s) 473
AccII CGCG 2 cut(s) 26, 54
AciI CCGC 3 cut(s) 26, 54, 120
AcuI CTGAAG 2 cut(s) 384, 582
AcyI GRCGYC 1 cut(s) 590
AfiI CCNNNNNNNGG 2 cut(s) 72, 473
AgsI TTSAA 2 cut(s) 18, 505
AjnI CCWGG 1 cut(s) 478
AluBI AGCT 3 cut(s) 22, 182, 578
AluI AGCT 3 cut(s) 22, 182, 578
Alw26I GTCTC 2 cut(s) 71, 578
ApeKI GCWGC 1 cut(s) 557
AseI ATTAAT 1 cut(s) 258
AspLEI GCGC 1 cut(s) 54
AspS9I GGNCC 1 cut(s) 476
AsuC2I CCSGG 2 cut(s) 73, 346
AsuHPI GGTGA 4 cut(s) 209, 259, 320, 363
AvaII GGWCC 1 cut(s) 476
BbsI GAAGAC 1 cut(s) 372
BbvI GCAGC 1 cut(s) 544
BccI CCATC 1 cut(s) 413
BceAI ACGGC 1 cut(s) 177
BciT130I CCWGG 1 cut(s) 480
BcnI CCSGG 2 cut(s) 73, 346
BcoDI GTCTC 2 cut(s) 71, 578
BfaI CTAG 1 cut(s) 575
BfmI CTRYAG 1 cut(s) 183
BglII AGATCT 1 cut(s) 440
BisI GCNGC 2 cut(s) 55, 558
BlsI GCNGC 2 cut(s) 56, 559
Bme1390I CCNGG 3 cut(s) 73, 346, 480
Bme18I GGWCC 1 cut(s) 476
BmgT120I GGNCC 1 cut(s) 476
BmrFI CCNGG 3 cut(s) 73, 346, 480
BpiI GAAGAC 1 cut(s) 372
BpmI CTGGAG 1 cut(s) 465
BpuMI CCSGG 2 cut(s) 73, 346
BsaHI GRCGYC 1 cut(s) 590
BsaI GGTCTC 1 cut(s) 71
BsaJI CCNNGG 4 cut(s) 72, 193, 374, 472
Bsc4I CCNNNNNNNGG 2 cut(s) 72, 473
BseBI CCWGG 1 cut(s) 480
BseDI CCNNGG 4 cut(s) 72, 193, 374, 472
BseGI GGATG 2 cut(s) 232, 517
BseLI CCNNNNNNNGG 2 cut(s) 72, 473
BseMII CTCAG 1 cut(s) 423
BseRI GAGGAG 1 cut(s) 548
BseXI GCAGC 1 cut(s) 544
Bsh1236I CGCG 2 cut(s) 26, 54
BsiSI CCGG 2 cut(s) 72, 345
BslI CCNNNNNNNGG 2 cut(s) 72, 473
BsmAI GTCTC 2 cut(s) 71, 578
BsmBI CGTCTC 1 cut(s) 578
Bso31I GGTCTC 1 cut(s) 71
Bsp143I GATC 1 cut(s) 440
Bsp19I CCATGG 1 cut(s) 472
BspACI CCGC 3 cut(s) 26, 54, 120
BspCNI CTCAG 1 cut(s) 424
BspFNI CGCG 2 cut(s) 26, 54
BspTNI GGTCTC 1 cut(s) 71
BssECI CCNNGG 4 cut(s) 72, 193, 374, 472
BssMI GATC 1 cut(s) 440
BssNI GRCGYC 1 cut(s) 590
BssT1I CCWWGG 2 cut(s) 374, 472
Bst2UI CCWGG 1 cut(s) 480
BstACI GRCGYC 1 cut(s) 590
BstC8I GCNNGC 3 cut(s) 24, 190, 555
BstDEI CTNAG 1 cut(s) 432
BstDSI CCRYGG 2 cut(s) 193, 472
BstF5I GGATG 2 cut(s) 232, 517
BstFNI CGCG 2 cut(s) 26, 54
BstHHI GCGC 1 cut(s) 54
BstKTI GATC 1 cut(s) 443
BstMAI GTCTC 2 cut(s) 71, 578
BstMBI GATC 1 cut(s) 440
BstMWI GCNNNNNNNGC 1 cut(s) 138
BstNI CCWGG 1 cut(s) 480
BstSCI CCNGG 3 cut(s) 71, 344, 478
BstSFI CTRYAG 1 cut(s) 183
BstUI CGCG 2 cut(s) 26, 54
BstV1I GCAGC 1 cut(s) 544
BstV2I GAAGAC 1 cut(s) 372
BstX2I RGATCY 1 cut(s) 440
BstXI CCANNNNNNTGG 1 cut(s) 479
BstYI RGATCY 1 cut(s) 440
BtgI CCRYGG 2 cut(s) 193, 472
BtsCI GGATG 2 cut(s) 232, 517
Cac8I GCNNGC 3 cut(s) 24, 190, 555
CfoI GCGC 1 cut(s) 54
Cfr13I GGNCC 1 cut(s) 476
CseI GACGC 2 cut(s) 438, 598
CviAII CATG 3 cut(s) 170, 338, 473
CviJI RGCY 7 cut(s) 6, 22, 182, 192, 239, 344, 578
CviKI_1 RGCY 7 cut(s) 6, 22, 182, 192, 239, 344, 578
DdeI CTNAG 1 cut(s) 432
DpnI GATC 1 cut(s) 442
DpnII GATC 1 cut(s) 440
Eco130I CCWWGG 2 cut(s) 374, 472
Eco31I GGTCTC 1 cut(s) 71
Eco47I GGWCC 1 cut(s) 476
Eco57I CTGAAG 2 cut(s) 384, 582
EcoRII CCWGG 1 cut(s) 478
EcoT14I CCWWGG 2 cut(s) 374, 472
ErhI CCWWGG 2 cut(s) 374, 472
Esp3I CGTCTC 1 cut(s) 578
FaeI CATG 3 cut(s) 173, 341, 476
FaiI YATR 6 cut(s) 143, 171, 233, 339, 356, 474
FatI CATG 3 cut(s) 169, 337, 472
Fnu4HI GCNGC 2 cut(s) 55, 558
FokI GGATG 2 cut(s) 239, 524
Fsp4HI GCNGC 2 cut(s) 55, 558
FspBI CTAG 1 cut(s) 575
GlaI GCGC 1 cut(s) 53
GluI GCNGC 2 cut(s) 55, 558
GsuI CTGGAG 1 cut(s) 465
HapII CCGG 2 cut(s) 72, 345
HgaI GACGC 2 cut(s) 438, 598
HhaI GCGC 1 cut(s) 54
Hin1I GRCGYC 1 cut(s) 590
Hin1II CATG 3 cut(s) 173, 341, 476
Hin6I GCGC 1 cut(s) 52
HinP1I GCGC 1 cut(s) 52
HinfI GANTC 2 cut(s) 14, 368
HpaII CCGG 2 cut(s) 72, 345
HphI GGTGA 4 cut(s) 209, 259, 320, 363
Hpy188I TCNGA 4 cut(s) 334, 364, 433, 454
Hpy188III TCNNGA 1 cut(s) 444
Hpy99I CGWCG 1 cut(s) 592
HpyAV CCTTC 2 cut(s) 244, 404
HpyCH4V TGCA 1 cut(s) 132
HpyF10VI GCNNNNNNNGC 1 cut(s) 138
HpyF3I CTNAG 1 cut(s) 432
Hsp92I GRCGYC 1 cut(s) 590
Hsp92II CATG 3 cut(s) 173, 341, 476
HspAI GCGC 1 cut(s) 52
Kzo9I GATC 1 cut(s) 440
LmnI GCTCC 2 cut(s) 334, 446
LpnPI CCDG 8 cut(s) 49, 62, 85, 358, 429, 465, 492, 567
Lsp1109I GCAGC 1 cut(s) 544
MaeI CTAG 1 cut(s) 575
MaeIII GTNAC 1 cut(s) 308
MalI GATC 1 cut(s) 442
MboI GATC 1 cut(s) 440
MboII GAAGA 4 cut(s) 377, 450, 493, 575
MflI RGATCY 1 cut(s) 440
MluCI AATT 2 cut(s) 398, 545
MlyI GAGTC 1 cut(s) 362
MnlI CCTC 8 cut(s) 56, 238, 400, 427, 508, 526, 529, 604
MseI TTAA 2 cut(s) 210, 258
MspI CCGG 2 cut(s) 72, 345
MspR9I CCNGG 3 cut(s) 73, 346, 480
MvaI CCWGG 1 cut(s) 480
MvnI CGCG 2 cut(s) 26, 54
MwoI GCNNNNNNNGC 1 cut(s) 138
NciI CCSGG 2 cut(s) 73, 346
NcoI CCATGG 1 cut(s) 472
NdeII GATC 1 cut(s) 440
NlaIII CATG 3 cut(s) 173, 341, 476
NmuCI GTSAC 1 cut(s) 308
PfeI GAWTC 1 cut(s) 14
PflMI CCANNNNNTGG 1 cut(s) 473
PkrI GCNGC 2 cut(s) 56, 559
PleI GAGTC 1 cut(s) 362
PpsI GAGTC 1 cut(s) 362
PshBI ATTAAT 1 cut(s) 258
PsiI TTATAA 1 cut(s) 356
Psp6I CCWGG 1 cut(s) 478
PspGI CCWGG 1 cut(s) 478
PspPI GGNCC 1 cut(s) 476
PsuI RGATCY 1 cut(s) 440
SaqAI TTAA 2 cut(s) 210, 258
SatI GCNGC 2 cut(s) 55, 558
Sau3AI GATC 1 cut(s) 440
Sau96I GGNCC 1 cut(s) 476
SchI GAGTC 1 cut(s) 362
ScrFI CCNGG 3 cut(s) 73, 346, 480
SetI ASST 9 cut(s) 24, 184, 249, 310, 321, 481, 510, 580, 613
SfcI CTRYAG 1 cut(s) 183
SinI GGWCC 1 cut(s) 476
Sse9I AATT 2 cut(s) 398, 545
SsiI CCGC 3 cut(s) 26, 54, 120
SspMI CTAG 1 cut(s) 575
StyD4I CCNGG 3 cut(s) 71, 344, 478
StyI CCWWGG 2 cut(s) 374, 472
TasI AATT 2 cut(s) 398, 545
TauI GCSGC 1 cut(s) 57
TfiI GAWTC 1 cut(s) 14
Tru1I TTAA 2 cut(s) 210, 258
Tru9I TTAA 2 cut(s) 210, 258
TseFI GTSAC 1 cut(s) 308
TseI GCWGC 1 cut(s) 557
Tsp45I GTSAC 1 cut(s) 308
TspDTI ATGAA 2 cut(s) 276, 354
Van91I CCANNNNNTGG 1 cut(s) 473
VpaK11BI GGWCC 1 cut(s) 476
VspI ATTAAT 1 cut(s) 258
XspI CTAG 1 cut(s) 575
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.