Rh4AG230600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0016307
Physical Location & Seq
Forward (+)
53373344 .. 53375086
1743 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG230600.1

Sequence Viewer

Length: 774 bp
ATGGGCTGTGGGGATTCAAAGCTCGCGGTTGCCACCAGCAACGCCCTCCTGCGCGGCAAGAAATCCAATGCCGGGGAGACCACCAAGAACAGCAAAGACATCGAAACCAACCACAAAACCGCCACAGATTGCAACAACAGCATAGCAAACTCAACGCAACAACAACAACAACAACAACATGAGCAAGAAGCTGCAGCAAGCCGTGGTGAAAAAGTTGTTAATAAGAACAATGTGGATGTTATGGTGGCTGATGAGGTGAAGGACATTAATGAAAACAAAAAGGAAAATGGAGATGACAAAGAAATAATAGACAAAGGTGACAACAAGGTTTTAGTGGTTTCGGAGCATGAAGCCGGGAGATTTATAACATCTGAAGACTCACCAAGGGATTTCTTTTCGTCAAGGAAATTAGATGAGGAAGGGATTGATGGGATTATTTCTGAGGGAAGATCTGGAGCGTCCGATTATTACACTCCACGCCATGGACCTGGAAGTAAGGGAAACTCGTTCTTCAAGGTGGATGAGGAAAGCAAAGTTGTAGAGGAGGACAAAGAATTGTTGCCTGCTGCTGAAGAAACAAAACTAGCTGTTGAGACGACGTCCTCAACAGAAAATAAAGGAGAGACAGCAGTACTAGTGGAGGAGAAATTGATAAAGGAAACTGCAGAAGTGGAAATCAAAACCGCTACTGTTGAAGCCAAAGTTTCTAGCCCTGCTGCTGAGGAAGAGAAGAAAGAAGAGAAGAAAGTAGAGAAGAAAGAAGAGAAGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

257

Amino Acids

28.11

Weight (kDa)

4.86

Isoelectric Point (pI)

40.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016307)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g17371
malus_domestica MD13G1172700.v1.1 MD16G1174200.v1.1
prunus_persica Prupe.1G140900_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0421301
rosa_laevigata RLG00000007699
rosa_multiflora Rmu_sc0004892.1_g000010 Rmu_sc0007721.1_g000001
rosa_roxburghii Rroxscaffold_5G00363530
rosa_rugosa Rorug04G0169200
rosa_samantha Rh4AG230600 Rh4BG233600 Rh4CG244800 Rh4DG229300
rosa_wichuraiana Rw4G020320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 365
AatII GACGTC 1 cut(s) 602
AccB7I CCANNNNNTGG 1 cut(s) 482
AccII CGCG 2 cut(s) 26, 54
AciI CCGC 4 cut(s) 26, 54, 120, 684
AcuI CTGAAG 2 cut(s) 393, 591
AcyI GRCGYC 1 cut(s) 599
AfaI GTAC 1 cut(s) 633
AfiI CCNNNNNNNGG 2 cut(s) 72, 482
AgsI TTSAA 3 cut(s) 18, 514, 695
AhlI ACTAGT 1 cut(s) 634
AjnI CCWGG 1 cut(s) 487
AluBI AGCT 3 cut(s) 22, 191, 587
AluI AGCT 3 cut(s) 22, 191, 587
Alw26I GTCTC 3 cut(s) 71, 587, 617
ApeKI GCWGC 4 cut(s) 191, 194, 566, 716
AseI ATTAAT 1 cut(s) 267
AspLEI GCGC 1 cut(s) 54
AspS9I GGNCC 1 cut(s) 485
AsuC2I CCSGG 2 cut(s) 73, 355
AsuHPI GGTGA 4 cut(s) 218, 268, 329, 372
AvaII GGWCC 1 cut(s) 485
BbsI GAAGAC 1 cut(s) 381
BbvCI CCTCAGC 1 cut(s) 720
BbvI GCAGC 4 cut(s) 178, 206, 553, 703
BccI CCATC 1 cut(s) 422
BceAI ACGGC 1 cut(s) 186
BcgI CGANNNNNNTGC 2 cut(s) 82, 116
BciT130I CCWGG 1 cut(s) 489
BcnI CCSGG 2 cut(s) 73, 355
BcoDI GTCTC 3 cut(s) 71, 587, 617
BcuI ACTAGT 1 cut(s) 634
BfaI CTAG 3 cut(s) 584, 635, 708
BfmI CTRYAG 2 cut(s) 192, 663
BglII AGATCT 1 cut(s) 449
BisI GCNGC 5 cut(s) 55, 192, 195, 567, 717
BlsI GCNGC 5 cut(s) 56, 193, 196, 568, 718
BmcAI AGTACT 1 cut(s) 633
Bme1390I CCNGG 3 cut(s) 73, 355, 489
Bme18I GGWCC 1 cut(s) 485
BmgT120I GGNCC 1 cut(s) 485
BmrFI CCNGG 3 cut(s) 73, 355, 489
BpiI GAAGAC 1 cut(s) 381
BpmI CTGGAG 1 cut(s) 474
Bpu10I CCTNAGC 1 cut(s) 720
BpuMI CCSGG 2 cut(s) 73, 355
BsaHI GRCGYC 1 cut(s) 599
BsaI GGTCTC 1 cut(s) 71
BsaJI CCNNGG 4 cut(s) 72, 202, 383, 481
Bsc4I CCNNNNNNNGG 2 cut(s) 72, 482
BseBI CCWGG 1 cut(s) 489
BseDI CCNNGG 4 cut(s) 72, 202, 383, 481
BseGI GGATG 2 cut(s) 241, 526
BseLI CCNNNNNNNGG 2 cut(s) 72, 482
BseMII CTCAG 2 cut(s) 432, 711
BseRI GAGGAG 2 cut(s) 557, 656
BseXI GCAGC 4 cut(s) 178, 206, 553, 703
Bsh1236I CGCG 2 cut(s) 26, 54
BsiSI CCGG 2 cut(s) 72, 354
BslI CCNNNNNNNGG 2 cut(s) 72, 482
BsmAI GTCTC 3 cut(s) 71, 587, 617
BsmBI CGTCTC 1 cut(s) 587
Bso31I GGTCTC 1 cut(s) 71
Bsp143I GATC 1 cut(s) 449
Bsp19I CCATGG 1 cut(s) 481
BspACI CCGC 4 cut(s) 26, 54, 120, 684
BspCNI CTCAG 2 cut(s) 433, 712
BspFNI CGCG 2 cut(s) 26, 54
BspMAI CTGCAG 2 cut(s) 196, 667
BspTNI GGTCTC 1 cut(s) 71
BssECI CCNNGG 4 cut(s) 72, 202, 383, 481
BssMI GATC 1 cut(s) 449
BssNI GRCGYC 1 cut(s) 599
BssT1I CCWWGG 2 cut(s) 383, 481
Bst2UI CCWGG 1 cut(s) 489
Bst4CI ACNGT 1 cut(s) 691
Bst6I CTCTTC 4 cut(s) 720, 732, 756, 761
BstACI GRCGYC 1 cut(s) 599
BstC8I GCNNGC 3 cut(s) 24, 199, 564
BstDEI CTNAG 2 cut(s) 441, 720
BstDSI CCRYGG 2 cut(s) 202, 481
BstF5I GGATG 2 cut(s) 241, 526
BstFNI CGCG 2 cut(s) 26, 54
BstHHI GCGC 1 cut(s) 54
BstKTI GATC 1 cut(s) 452
BstMAI GTCTC 3 cut(s) 71, 587, 617
BstMBI GATC 1 cut(s) 449
BstMWI GCNNNNNNNGC 1 cut(s) 138
BstNI CCWGG 1 cut(s) 489
BstSCI CCNGG 3 cut(s) 71, 353, 487
BstSFI CTRYAG 2 cut(s) 192, 663
BstUI CGCG 2 cut(s) 26, 54
BstV1I GCAGC 4 cut(s) 178, 206, 553, 703
BstV2I GAAGAC 1 cut(s) 381
BstX2I RGATCY 1 cut(s) 449
BstXI CCANNNNNNTGG 1 cut(s) 488
BstYI RGATCY 1 cut(s) 449
BtgI CCRYGG 2 cut(s) 202, 481
BtsCI GGATG 2 cut(s) 241, 526
Cac8I GCNNGC 3 cut(s) 24, 199, 564
CfoI GCGC 1 cut(s) 54
Cfr13I GGNCC 1 cut(s) 485
CseI GACGC 1 cut(s) 447
Csp6I GTAC 1 cut(s) 632
CviAII CATG 3 cut(s) 179, 347, 482
CviJI RGCY 9 cut(s) 6, 22, 191, 201, 248, 353, 587, 698, 711
CviKI_1 RGCY 9 cut(s) 6, 22, 191, 201, 248, 353, 587, 698, 711
CviQI GTAC 1 cut(s) 632
DdeI CTNAG 2 cut(s) 441, 720
DpnI GATC 1 cut(s) 451
DpnII GATC 1 cut(s) 449
Eam1104I CTCTTC 4 cut(s) 720, 732, 756, 761
EarI CTCTTC 4 cut(s) 720, 732, 756, 761
Eco130I CCWWGG 2 cut(s) 383, 481
Eco31I GGTCTC 1 cut(s) 71
Eco47I GGWCC 1 cut(s) 485
Eco57I CTGAAG 2 cut(s) 393, 591
EcoRII CCWGG 1 cut(s) 487
EcoT14I CCWWGG 2 cut(s) 383, 481
ErhI CCWWGG 2 cut(s) 383, 481
Esp3I CGTCTC 1 cut(s) 587
FaeI CATG 3 cut(s) 182, 350, 485
FaiI YATR 6 cut(s) 143, 180, 242, 348, 365, 483
FatI CATG 3 cut(s) 178, 346, 481
Fnu4HI GCNGC 5 cut(s) 55, 192, 195, 567, 717
FokI GGATG 2 cut(s) 248, 533
Fsp4HI GCNGC 5 cut(s) 55, 192, 195, 567, 717
FspBI CTAG 3 cut(s) 584, 635, 708
GlaI GCGC 1 cut(s) 53
GluI GCNGC 5 cut(s) 55, 192, 195, 567, 717
GsuI CTGGAG 1 cut(s) 474
HapII CCGG 2 cut(s) 72, 354
HgaI GACGC 1 cut(s) 447
HhaI GCGC 1 cut(s) 54
Hin1I GRCGYC 1 cut(s) 599
Hin1II CATG 3 cut(s) 182, 350, 485
Hin6I GCGC 1 cut(s) 52
HinP1I GCGC 1 cut(s) 52
HinfI GANTC 2 cut(s) 14, 377
HpaII CCGG 2 cut(s) 72, 354
HphI GGTGA 4 cut(s) 218, 268, 329, 372
Hpy188I TCNGA 4 cut(s) 343, 373, 442, 463
Hpy188III TCNNGA 1 cut(s) 453
Hpy99I CGWCG 1 cut(s) 601
HpyAV CCTTC 2 cut(s) 253, 413
HpyCH4III ACNGT 1 cut(s) 691
HpyCH4IV ACGT 1 cut(s) 599
HpyCH4V TGCA 3 cut(s) 132, 194, 665
HpyF10VI GCNNNNNNNGC 1 cut(s) 138
HpyF3I CTNAG 2 cut(s) 441, 720
HpySE526I ACGT 1 cut(s) 599
Hsp92I GRCGYC 1 cut(s) 599
Hsp92II CATG 3 cut(s) 182, 350, 485
HspAI GCGC 1 cut(s) 52
Kzo9I GATC 1 cut(s) 449
LmnI GCTCC 2 cut(s) 343, 455
LpnPI CCDG 9 cut(s) 49, 62, 85, 367, 438, 474, 501, 576, 726
Lsp1109I GCAGC 4 cut(s) 178, 206, 553, 703
MaeI CTAG 3 cut(s) 584, 635, 708
MaeII ACGT 1 cut(s) 599
MaeIII GTNAC 1 cut(s) 317
MalI GATC 1 cut(s) 451
MboI GATC 1 cut(s) 449
MflI RGATCY 1 cut(s) 449
MluCI AATT 3 cut(s) 407, 554, 647
MlyI GAGTC 1 cut(s) 371
MseI TTAA 3 cut(s) 219, 267, 772
MspI CCGG 2 cut(s) 72, 354
MspR9I CCNGG 3 cut(s) 73, 355, 489
MvaI CCWGG 1 cut(s) 489
MvnI CGCG 2 cut(s) 26, 54
MwoI GCNNNNNNNGC 1 cut(s) 138
NciI CCSGG 2 cut(s) 73, 355
NcoI CCATGG 1 cut(s) 481
NdeII GATC 1 cut(s) 449
NlaIII CATG 3 cut(s) 182, 350, 485
NmuCI GTSAC 1 cut(s) 317
PfeI GAWTC 1 cut(s) 14
PflFI GACNNNGTC 1 cut(s) 598
PflMI CCANNNNNTGG 1 cut(s) 482
PkrI GCNGC 5 cut(s) 56, 193, 196, 568, 718
PleI GAGTC 1 cut(s) 371
PpsI GAGTC 1 cut(s) 371
PshBI ATTAAT 1 cut(s) 267
PsiI TTATAA 1 cut(s) 365
Psp6I CCWGG 1 cut(s) 487
PspGI CCWGG 1 cut(s) 487
PspPI GGNCC 1 cut(s) 485
PstI CTGCAG 2 cut(s) 196, 667
PsuI RGATCY 1 cut(s) 449
PsyI GACNNNGTC 1 cut(s) 598
RsaI GTAC 1 cut(s) 633
RsaNI GTAC 1 cut(s) 632
SaqAI TTAA 3 cut(s) 219, 267, 772
SatI GCNGC 5 cut(s) 55, 192, 195, 567, 717
Sau3AI GATC 1 cut(s) 449
Sau96I GGNCC 1 cut(s) 485
ScaI AGTACT 1 cut(s) 633
SchI GAGTC 1 cut(s) 371
ScrFI CCNGG 3 cut(s) 73, 355, 489
SetI ASST 9 cut(s) 24, 193, 258, 319, 330, 490, 519, 589, 602
SfcI CTRYAG 2 cut(s) 192, 663
SinI GGWCC 1 cut(s) 485
SpeI ACTAGT 1 cut(s) 634
Sse9I AATT 3 cut(s) 407, 554, 647
SsiI CCGC 4 cut(s) 26, 54, 120, 684
SspMI CTAG 3 cut(s) 584, 635, 708
StyD4I CCNGG 3 cut(s) 71, 353, 487
StyI CCWWGG 2 cut(s) 383, 481
TaaI ACNGT 1 cut(s) 691
TaiI ACGT 1 cut(s) 602
TaqI TCGA 1 cut(s) 102
TasI AATT 3 cut(s) 407, 554, 647
TatI WGTACW 1 cut(s) 631
TauI GCSGC 1 cut(s) 57
TfiI GAWTC 1 cut(s) 14
Tru1I TTAA 3 cut(s) 219, 267, 772
Tru9I TTAA 3 cut(s) 219, 267, 772
TseFI GTSAC 1 cut(s) 317
TseI GCWGC 4 cut(s) 191, 194, 566, 716
Tsp45I GTSAC 1 cut(s) 317
TspDTI ATGAA 2 cut(s) 285, 363
Tth111I GACNNNGTC 1 cut(s) 598
Van91I CCANNNNNTGG 1 cut(s) 482
VpaK11BI GGWCC 1 cut(s) 485
VspI ATTAAT 1 cut(s) 267
XspI CTAG 3 cut(s) 584, 635, 708
ZraI GACGTC 1 cut(s) 600
ZrmI AGTACT 1 cut(s) 633
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.