Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0016307

Physical Location & Seq

Genomic Coordinates Reverse (-)

14723914 .. 14724833

Gene Structure 920 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1174200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGGTTGCGGGGAATCAAAGTTGGCGGTTGCCACCAGCAACACCATCCTCCGCCGCAAGAAATCGAGCGTTGTCGAACCTTCCAAGAAGAGCAAGGACATAGAAACCGTCCTAGAAAACAATGACAATGCAGCGAACTCAACGGTGCAACAACAACAAGAAGAACAAGTCGAGGAGAACAATGTGGTTGCCAATAATGTTGGTGGTGGTGAGGCGTCTGCGGTGGGTGATGATGTGAATGTGAAAGACATAGAAGTAACCAACAAGGACGGAGAAGATGGTGGTAAGGAAGTATTGGAAAAAGGTAATAAAGAAGAGCATGACGAGGCGGCGGAGAGATTGATTTCGCATGGCTCTCCGAATCGTTTCTTTTCGTCGAGGAAATTGGATGAGGAAGGAATTGATGGGATTATTTCTGAGGGACGATCGGGGACATCAGACTATTACACTCCACGCCATGGAAGTAAGGGAAGTTTTTTCAAGGTAGATGATGATATTGCAGAGGATGATAACGAATTGGATCTGCCTGCAGATACAGAAGCTCTAGTAGCTGAGCCACAAAAAACGGGTTTGTACAGAAGAGCCCGTAAAGAAACCGGAGGAGAATTTGGTGAAGAAAACAGAAGCAGTAGTTACAACCACTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

216

Amino Acids

23.4

Weight (kDa)

4.62

Isoelectric Point (pI)

45.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016307)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g17371
malus_domestica	MD13G1172700.v1.1 MD16G1174200.v1.1
prunus_persica	Prupe.1G140900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0421301
rosa_laevigata	RLG00000007699
rosa_multiflora	Rmu_sc0004892.1_g000010 Rmu_sc0007721.1_g000001
rosa_roxburghii	Rroxscaffold_5G00363530
rosa_rugosa	Rorug04G0169200
rosa_samantha	Rh4AG230600 Rh4BG233600 Rh4CG244800 Rh4DG229300
rosa_wichuraiana	Rw4G020320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	458
AciI	CCGC	7 cut(s)	9, 26, 52, 55, 221, 329, 332
AclWI	GGATC	1 cut(s)	528
AcsI	RAATTY	1 cut(s)	605
AcyI	GRCGYC	1 cut(s)	215
AfaI	GTAC	1 cut(s)	575
AfiI	CCNNNNNNNGG	1 cut(s)	458
AgsI	TTSAA	1 cut(s)	481
AluBI	AGCT	2 cut(s)	542, 551
AluI	AGCT	2 cut(s)	542, 551
AlwI	GGATC	1 cut(s)	528
ApeKI	GCWGC	1 cut(s)	131
ApoI	RAATTY	1 cut(s)	605
Asp700I	GAANNNNTTC	1 cut(s)	365
AsuHPI	GGTGA	3 cut(s)	221, 239, 623
BanII	GRGCYC	1 cut(s)	586
BbvI	GCAGC	1 cut(s)	143
BccI	CCATC	3 cut(s)	53, 272, 398
BfaI	CTAG	2 cut(s)	113, 545
BfmI	CTRYAG	1 cut(s)	528
BisI	GCNGC	3 cut(s)	55, 132, 330
BlpI	GCTNAGC	1 cut(s)	552
BlsI	GCNGC	3 cut(s)	56, 133, 331
Bpu1102I	GCTNAGC	1 cut(s)	552
BsaHI	GRCGYC	1 cut(s)	215
BsaJI	CCNNGG	1 cut(s)	457
BsaWI	WCCGGW	1 cut(s)	596
Bsc4I	CCNNNNNNNGG	1 cut(s)	458
BseDI	CCNNGG	1 cut(s)	457
BseGI	GGATG	3 cut(s)	45, 394, 511
BseLI	CCNNNNNNNGG	1 cut(s)	458
BseMII	CTCAG	2 cut(s)	408, 543
BseRI	GAGGAG	2 cut(s)	188, 615
BseXI	GCAGC	1 cut(s)	143
Bsh1285I	CGRYCG	1 cut(s)	428
BsiEI	CGRYCG	1 cut(s)	428
BsiSI	CCGG	1 cut(s)	597
BslFI	GGGAC	2 cut(s)	435, 445
BslI	CCNNNNNNNGG	1 cut(s)	458
BsmFI	GGGAC	2 cut(s)	435, 445
Bsp1286I	GDGCHC	1 cut(s)	586
Bsp1407I	TGTACA	1 cut(s)	573
Bsp143I	GATC	2 cut(s)	425, 520
Bsp1720I	GCTNAGC	1 cut(s)	552
Bsp19I	CCATGG	1 cut(s)	457
BspACI	CCGC	7 cut(s)	9, 26, 52, 55, 221, 329, 332
BspCNI	CTCAG	2 cut(s)	409, 544
BspMAI	CTGCAG	1 cut(s)	532
BspPI	GGATC	1 cut(s)	528
BspQI	GCTCTTC	3 cut(s)	83, 309, 574
BsrGI	TGTACA	1 cut(s)	573
BssECI	CCNNGG	1 cut(s)	457
BssMI	GATC	2 cut(s)	425, 520
BssNI	GRCGYC	1 cut(s)	215
BssT1I	CCWWGG	1 cut(s)	457
Bst4CI	ACNGT	3 cut(s)	109, 145, 644
Bst6I	CTCTTC	3 cut(s)	83, 309, 574
BstACI	GRCGYC	1 cut(s)	215
BstAUI	TGTACA	1 cut(s)	573
BstC8I	GCNNGC	1 cut(s)	528
BstDEI	CTNAG	2 cut(s)	417, 552
BstDSI	CCRYGG	1 cut(s)	457
BstF5I	GGATG	3 cut(s)	45, 394, 511
BstKTI	GATC	2 cut(s)	428, 523
BstMBI	GATC	2 cut(s)	425, 520
BstMCI	CGRYCG	1 cut(s)	428
BstMWI	GCNNNNNNNGC	1 cut(s)	548
BstSFI	CTRYAG	1 cut(s)	528
BstV1I	GCAGC	1 cut(s)	143
BstX2I	RGATCY	1 cut(s)	520
BstYI	RGATCY	1 cut(s)	520
BtgI	CCRYGG	1 cut(s)	457
BtsCI	GGATG	3 cut(s)	45, 394, 511
BtsIMutI	CAGTG	1 cut(s)	640
Cac8I	GCNNGC	1 cut(s)	528
CseI	GACGC	1 cut(s)	204
Csp6I	GTAC	1 cut(s)	574
CviAII	CATG	3 cut(s)	320, 350, 458
CviJI	RGCY	5 cut(s)	354, 542, 551, 556, 584
CviKI_1	RGCY	5 cut(s)	354, 542, 551, 556, 584
CviQI	GTAC	1 cut(s)	574
DdeI	CTNAG	2 cut(s)	417, 552
DpnI	GATC	2 cut(s)	427, 522
DpnII	GATC	2 cut(s)	425, 520
Eam1104I	CTCTTC	3 cut(s)	83, 309, 574
EarI	CTCTTC	3 cut(s)	83, 309, 574
EciI	GGCGGA	2 cut(s)	41, 347
Eco130I	CCWWGG	1 cut(s)	457
Eco24I	GRGCYC	1 cut(s)	586
EcoT14I	CCWWGG	1 cut(s)	457
EcoT38I	GRGCYC	1 cut(s)	586
ErhI	CCWWGG	1 cut(s)	457
FaeI	CATG	3 cut(s)	323, 353, 461
FaiI	YATR	5 cut(s)	101, 251, 321, 351, 459
FaqI	GGGAC	2 cut(s)	435, 445
FatI	CATG	3 cut(s)	319, 349, 457
FauI	CCCGC	1 cut(s)	2
Fnu4HI	GCNGC	3 cut(s)	55, 132, 330
FokI	GGATG	3 cut(s)	32, 401, 518
FriOI	GRGCYC	1 cut(s)	586
Fsp4HI	GCNGC	3 cut(s)	55, 132, 330
FspBI	CTAG	2 cut(s)	113, 545
GluI	GCNGC	3 cut(s)	55, 132, 330
HapII	CCGG	1 cut(s)	597
HgaI	GACGC	1 cut(s)	204
Hin1I	GRCGYC	1 cut(s)	215
Hin1II	CATG	3 cut(s)	323, 353, 461
HinfI	GANTC	2 cut(s)	14, 361
HpaII	CCGG	1 cut(s)	597
HphI	GGTGA	3 cut(s)	221, 239, 623
Hpy188I	TCNGA	3 cut(s)	360, 418, 439
Hpy99I	CGWCG	1 cut(s)	379
HpyAV	CCTTC	2 cut(s)	90, 389
HpyCH4III	ACNGT	3 cut(s)	109, 145, 644
HpyCH4V	TGCA	4 cut(s)	131, 148, 500, 530
HpyF10VI	GCNNNNNNNGC	1 cut(s)	548
HpyF3I	CTNAG	2 cut(s)	417, 552
Hsp92I	GRCGYC	1 cut(s)	215
Hsp92II	CATG	3 cut(s)	323, 353, 461
Kzo9I	GATC	2 cut(s)	425, 520
LguI	GCTCTTC	3 cut(s)	83, 309, 574
LpnPI	CCDG	3 cut(s)	49, 540, 610
Lsp1109I	GCAGC	1 cut(s)	143
MaeI	CTAG	2 cut(s)	113, 545
MaeIII	GTNAC	2 cut(s)	256, 632
MalI	GATC	2 cut(s)	427, 522
MboI	GATC	2 cut(s)	425, 520
MboII	GAAGA	6 cut(s)	100, 173, 287, 326, 591, 626
MflI	RGATCY	1 cut(s)	520
MhlI	GDGCHC	1 cut(s)	586
MluCI	AATT	4 cut(s)	383, 399, 515, 605
MnlI	CCTC	9 cut(s)	59, 166, 205, 319, 372, 385, 412, 496, 593
MroXI	GAANNNNTTC	1 cut(s)	365
MspI	CCGG	1 cut(s)	597
MwoI	GCNNNNNNNGC	1 cut(s)	548
NcoI	CCATGG	1 cut(s)	457
NdeII	GATC	2 cut(s)	425, 520
NlaIII	CATG	3 cut(s)	323, 353, 461
PciSI	GCTCTTC	3 cut(s)	83, 309, 574
PdmI	GAANNNNTTC	1 cut(s)	365
PfeI	GAWTC	2 cut(s)	14, 361
PflMI	CCANNNNNTGG	1 cut(s)	458
PkrI	GCNGC	3 cut(s)	56, 133, 331
Ple19I	CGATCG	1 cut(s)	428
PstI	CTGCAG	1 cut(s)	532
PsuI	RGATCY	1 cut(s)	520
PvuI	CGATCG	1 cut(s)	428
RsaI	GTAC	1 cut(s)	575
RsaNI	GTAC	1 cut(s)	574
SapI	GCTCTTC	3 cut(s)	83, 309, 574
SatI	GCNGC	3 cut(s)	55, 132, 330
Sau3AI	GATC	2 cut(s)	425, 520
SduI	GDGCHC	1 cut(s)	586
SetI	ASST	5 cut(s)	82, 307, 486, 544, 553
SfcI	CTRYAG	1 cut(s)	528
Sse9I	AATT	4 cut(s)	383, 399, 515, 605
SsiI	CCGC	7 cut(s)	9, 26, 52, 55, 221, 329, 332
SspMI	CTAG	2 cut(s)	113, 545
StyI	CCWWGG	1 cut(s)	457
TaaI	ACNGT	3 cut(s)	109, 145, 644
TaqI	TCGA	4 cut(s)	65, 75, 171, 377
TasI	AATT	4 cut(s)	383, 399, 515, 605
TatI	WGTACW	1 cut(s)	573
TauI	GCSGC	2 cut(s)	57, 332
TfiI	GAWTC	2 cut(s)	14, 361
TscAI	CASTG	1 cut(s)	647
TseI	GCWGC	1 cut(s)	131
TspGWI	ACGGA	1 cut(s)	285
TspRI	CASTG	1 cut(s)	647
Van91I	CCANNNNNTGG	1 cut(s)	458
XapI	RAATTY	1 cut(s)	605
XmnI	GAANNNNTTC	1 cut(s)	365
XspI	CTAG	2 cut(s)	113, 545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.