Rmu_sc0004892.1_g000010

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004892.1
OG0016307
Physical Location & Seq
Forward (+)
27160 .. 28419
1260 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004892.1_g000010.1.cds

Sequence Viewer

Length: 786 bp
atgggctgtggggattcaaagctcgcggttgccaccagcaacgccctcctgcgcggcaagaaatccaatgccggggagaccaccaagaacagcaaagacatcgaaaccaaccacaaaaccgccacagattgcaacaacagcatagcaaactcaacgcaacaacaacatgagcaagaagctgcagcaagccgtggtgaaaaagttgttaataagaacaatgtggatgttatggtggctgatgaggtgaaggacattaatgaaaacaaaaaggaaaatggagatgacaaagaaataatggacaaaggtgacaacaaggttttagtggtttcggagcatgaagccgggagatttataacatctgaagactcaccaagggatttcttttcgtcaaggaaattagatgaggaagggattgatgggattatttctgagggaagatctggagcgtccgattattacactccacgccatggacctggaagtaagggaaactcgttcttcaaggtggatgaggaaagcaaagttgtagaggaggacaaagaattgttgcctgctgctgaagaaacaaaacgagctgttgagacgacgtcctcaacagaaaataaaggagaaatagcagtactagtggaggagaaattgataaaggaaactgcagaagtggaaatcaaaaccgctactgttgaagccaaagtttctagccctgctgctgaggaagagaagaaagaagagacgaaagtagagaagaaagaagagaagaaagtagagaagaaagaagagaagagttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

261

Amino Acids

28.64

Weight (kDa)

4.94

Isoelectric Point (pI)

40.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016307)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g17371
malus_domestica MD13G1172700.v1.1 MD16G1174200.v1.1
prunus_persica Prupe.1G140900_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0421301
rosa_laevigata RLG00000007699
rosa_multiflora Rmu_sc0004892.1_g000010 Rmu_sc0007721.1_g000001
rosa_roxburghii Rroxscaffold_5G00363530
rosa_rugosa Rorug04G0169200
rosa_samantha Rh4AG230600 Rh4BG233600 Rh4CG244800 Rh4DG229300
rosa_wichuraiana Rw4G020320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 353
AatII GACGTC 1 cut(s) 590
AccB7I CCANNNNNTGG 1 cut(s) 470
AccII CGCG 2 cut(s) 26, 54
AciI CCGC 4 cut(s) 26, 54, 120, 672
AcuI CTGAAG 2 cut(s) 381, 579
AcyI GRCGYC 1 cut(s) 587
AfaI GTAC 1 cut(s) 621
AfiI CCNNNNNNNGG 2 cut(s) 72, 470
AgsI TTSAA 3 cut(s) 18, 502, 683
AhlI ACTAGT 1 cut(s) 622
AjnI CCWGG 1 cut(s) 475
AluBI AGCT 3 cut(s) 22, 179, 575
AluI AGCT 3 cut(s) 22, 179, 575
Alw26I GTCTC 3 cut(s) 71, 575, 722
ApeKI GCWGC 4 cut(s) 179, 182, 554, 704
AseI ATTAAT 1 cut(s) 255
AspLEI GCGC 1 cut(s) 54
AspS9I GGNCC 1 cut(s) 473
AsuC2I CCSGG 2 cut(s) 73, 343
AsuHPI GGTGA 4 cut(s) 206, 256, 317, 360
AvaII GGWCC 1 cut(s) 473
BbsI GAAGAC 1 cut(s) 369
BbvCI CCTCAGC 1 cut(s) 708
BbvI GCAGC 4 cut(s) 166, 194, 541, 691
BccI CCATC 1 cut(s) 410
BceAI ACGGC 1 cut(s) 174
BcgI CGANNNNNNTGC 2 cut(s) 82, 116
BciT130I CCWGG 1 cut(s) 477
BcnI CCSGG 2 cut(s) 73, 343
BcoDI GTCTC 3 cut(s) 71, 575, 722
BcuI ACTAGT 1 cut(s) 622
BfaI CTAG 2 cut(s) 623, 696
BfmI CTRYAG 2 cut(s) 180, 651
BglII AGATCT 1 cut(s) 437
BisI GCNGC 5 cut(s) 55, 180, 183, 555, 705
BlsI GCNGC 5 cut(s) 56, 181, 184, 556, 706
BmcAI AGTACT 1 cut(s) 621
Bme1390I CCNGG 3 cut(s) 73, 343, 477
Bme18I GGWCC 1 cut(s) 473
BmgT120I GGNCC 1 cut(s) 473
BmrFI CCNGG 3 cut(s) 73, 343, 477
BpiI GAAGAC 1 cut(s) 369
BpmI CTGGAG 1 cut(s) 462
Bpu10I CCTNAGC 1 cut(s) 708
BpuMI CCSGG 2 cut(s) 73, 343
BsaHI GRCGYC 1 cut(s) 587
BsaI GGTCTC 1 cut(s) 71
BsaJI CCNNGG 4 cut(s) 72, 190, 371, 469
Bsc4I CCNNNNNNNGG 2 cut(s) 72, 470
BseBI CCWGG 1 cut(s) 477
BseDI CCNNGG 4 cut(s) 72, 190, 371, 469
BseGI GGATG 2 cut(s) 229, 514
BseLI CCNNNNNNNGG 2 cut(s) 72, 470
BseMII CTCAG 2 cut(s) 420, 699
BseRI GAGGAG 2 cut(s) 545, 644
BseXI GCAGC 4 cut(s) 166, 194, 541, 691
Bsh1236I CGCG 2 cut(s) 26, 54
BsiSI CCGG 2 cut(s) 72, 342
BslI CCNNNNNNNGG 2 cut(s) 72, 470
BsmAI GTCTC 3 cut(s) 71, 575, 722
BsmBI CGTCTC 2 cut(s) 575, 722
Bso31I GGTCTC 1 cut(s) 71
Bsp143I GATC 1 cut(s) 437
Bsp19I CCATGG 1 cut(s) 469
BspACI CCGC 4 cut(s) 26, 54, 120, 672
BspCNI CTCAG 2 cut(s) 421, 700
BspFNI CGCG 2 cut(s) 26, 54
BspMAI CTGCAG 2 cut(s) 184, 655
BspTNI GGTCTC 1 cut(s) 71
BssECI CCNNGG 4 cut(s) 72, 190, 371, 469
BssMI GATC 1 cut(s) 437
BssNI GRCGYC 1 cut(s) 587
BssT1I CCWWGG 2 cut(s) 371, 469
Bst2UI CCWGG 1 cut(s) 477
Bst4CI ACNGT 1 cut(s) 679
Bst6I CTCTTC 5 cut(s) 708, 720, 744, 768, 773
BstACI GRCGYC 1 cut(s) 587
BstC8I GCNNGC 3 cut(s) 24, 187, 552
BstDEI CTNAG 2 cut(s) 429, 708
BstDSI CCRYGG 2 cut(s) 190, 469
BstF5I GGATG 2 cut(s) 229, 514
BstFNI CGCG 2 cut(s) 26, 54
BstHHI GCGC 1 cut(s) 54
BstKTI GATC 1 cut(s) 440
BstMAI GTCTC 3 cut(s) 71, 575, 722
BstMBI GATC 1 cut(s) 437
BstMWI GCNNNNNNNGC 1 cut(s) 138
BstNI CCWGG 1 cut(s) 477
BstSCI CCNGG 3 cut(s) 71, 341, 475
BstSFI CTRYAG 2 cut(s) 180, 651
BstUI CGCG 2 cut(s) 26, 54
BstV1I GCAGC 4 cut(s) 166, 194, 541, 691
BstV2I GAAGAC 1 cut(s) 369
BstX2I RGATCY 1 cut(s) 437
BstXI CCANNNNNNTGG 1 cut(s) 476
BstYI RGATCY 1 cut(s) 437
BtgI CCRYGG 2 cut(s) 190, 469
BtsCI GGATG 2 cut(s) 229, 514
Cac8I GCNNGC 3 cut(s) 24, 187, 552
CfoI GCGC 1 cut(s) 54
Cfr13I GGNCC 1 cut(s) 473
CseI GACGC 1 cut(s) 435
Csp6I GTAC 1 cut(s) 620
CviAII CATG 3 cut(s) 167, 335, 470
CviJI RGCY 9 cut(s) 6, 22, 179, 189, 236, 341, 575, 686, 699
CviKI_1 RGCY 9 cut(s) 6, 22, 179, 189, 236, 341, 575, 686, 699
CviQI GTAC 1 cut(s) 620
DdeI CTNAG 2 cut(s) 429, 708
DpnI GATC 1 cut(s) 439
DpnII GATC 1 cut(s) 437
Eam1104I CTCTTC 5 cut(s) 708, 720, 744, 768, 773
EarI CTCTTC 5 cut(s) 708, 720, 744, 768, 773
Eco130I CCWWGG 2 cut(s) 371, 469
Eco31I GGTCTC 1 cut(s) 71
Eco47I GGWCC 1 cut(s) 473
Eco57I CTGAAG 2 cut(s) 381, 579
EcoRII CCWGG 1 cut(s) 475
EcoT14I CCWWGG 2 cut(s) 371, 469
ErhI CCWWGG 2 cut(s) 371, 469
Esp3I CGTCTC 2 cut(s) 575, 722
FaeI CATG 3 cut(s) 170, 338, 473
FaiI YATR 6 cut(s) 143, 168, 230, 336, 353, 471
FatI CATG 3 cut(s) 166, 334, 469
Fnu4HI GCNGC 5 cut(s) 55, 180, 183, 555, 705
FokI GGATG 2 cut(s) 236, 521
Fsp4HI GCNGC 5 cut(s) 55, 180, 183, 555, 705
FspBI CTAG 2 cut(s) 623, 696
GlaI GCGC 1 cut(s) 53
GluI GCNGC 5 cut(s) 55, 180, 183, 555, 705
GsuI CTGGAG 1 cut(s) 462
HapII CCGG 2 cut(s) 72, 342
HgaI GACGC 1 cut(s) 435
HhaI GCGC 1 cut(s) 54
Hin1I GRCGYC 1 cut(s) 587
Hin1II CATG 3 cut(s) 170, 338, 473
Hin6I GCGC 1 cut(s) 52
HinP1I GCGC 1 cut(s) 52
HinfI GANTC 2 cut(s) 14, 365
HpaII CCGG 2 cut(s) 72, 342
HphI GGTGA 4 cut(s) 206, 256, 317, 360
Hpy188I TCNGA 4 cut(s) 331, 361, 430, 451
Hpy188III TCNNGA 1 cut(s) 441
Hpy99I CGWCG 1 cut(s) 589
HpyAV CCTTC 2 cut(s) 241, 401
HpyCH4III ACNGT 1 cut(s) 679
HpyCH4IV ACGT 1 cut(s) 587
HpyCH4V TGCA 3 cut(s) 132, 182, 653
HpyF10VI GCNNNNNNNGC 1 cut(s) 138
HpyF3I CTNAG 2 cut(s) 429, 708
HpySE526I ACGT 1 cut(s) 587
Hsp92I GRCGYC 1 cut(s) 587
Hsp92II CATG 3 cut(s) 170, 338, 473
HspAI GCGC 1 cut(s) 52
Kzo9I GATC 1 cut(s) 437
LmnI GCTCC 2 cut(s) 331, 443
LpnPI CCDG 9 cut(s) 49, 62, 85, 355, 426, 462, 489, 564, 714
Lsp1109I GCAGC 4 cut(s) 166, 194, 541, 691
MaeI CTAG 2 cut(s) 623, 696
MaeII ACGT 1 cut(s) 587
MaeIII GTNAC 1 cut(s) 305
MalI GATC 1 cut(s) 439
MboI GATC 1 cut(s) 437
MflI RGATCY 1 cut(s) 437
MluCI AATT 3 cut(s) 395, 542, 635
MlyI GAGTC 1 cut(s) 359
MseI TTAA 3 cut(s) 207, 255, 784
MspI CCGG 2 cut(s) 72, 342
MspR9I CCNGG 3 cut(s) 73, 343, 477
MvaI CCWGG 1 cut(s) 477
MvnI CGCG 2 cut(s) 26, 54
MwoI GCNNNNNNNGC 1 cut(s) 138
NciI CCSGG 2 cut(s) 73, 343
NcoI CCATGG 1 cut(s) 469
NdeII GATC 1 cut(s) 437
NlaIII CATG 3 cut(s) 170, 338, 473
NmuCI GTSAC 1 cut(s) 305
PfeI GAWTC 1 cut(s) 14
PflFI GACNNNGTC 1 cut(s) 586
PflMI CCANNNNNTGG 1 cut(s) 470
PkrI GCNGC 5 cut(s) 56, 181, 184, 556, 706
PleI GAGTC 1 cut(s) 359
PpsI GAGTC 1 cut(s) 359
PshBI ATTAAT 1 cut(s) 255
PsiI TTATAA 1 cut(s) 353
Psp6I CCWGG 1 cut(s) 475
PspGI CCWGG 1 cut(s) 475
PspPI GGNCC 1 cut(s) 473
PstI CTGCAG 2 cut(s) 184, 655
PsuI RGATCY 1 cut(s) 437
PsyI GACNNNGTC 1 cut(s) 586
RsaI GTAC 1 cut(s) 621
RsaNI GTAC 1 cut(s) 620
SaqAI TTAA 3 cut(s) 207, 255, 784
SatI GCNGC 5 cut(s) 55, 180, 183, 555, 705
Sau3AI GATC 1 cut(s) 437
Sau96I GGNCC 1 cut(s) 473
ScaI AGTACT 1 cut(s) 621
SchI GAGTC 1 cut(s) 359
ScrFI CCNGG 3 cut(s) 73, 343, 477
SetI ASST 9 cut(s) 24, 181, 246, 307, 318, 478, 507, 577, 590
SfcI CTRYAG 2 cut(s) 180, 651
SinI GGWCC 1 cut(s) 473
SpeI ACTAGT 1 cut(s) 622
Sse9I AATT 3 cut(s) 395, 542, 635
SsiI CCGC 4 cut(s) 26, 54, 120, 672
SspMI CTAG 2 cut(s) 623, 696
StyD4I CCNGG 3 cut(s) 71, 341, 475
StyI CCWWGG 2 cut(s) 371, 469
TaaI ACNGT 1 cut(s) 679
TaiI ACGT 1 cut(s) 590
TaqI TCGA 1 cut(s) 102
TasI AATT 3 cut(s) 395, 542, 635
TatI WGTACW 1 cut(s) 619
TauI GCSGC 1 cut(s) 57
TfiI GAWTC 1 cut(s) 14
Tru1I TTAA 3 cut(s) 207, 255, 784
Tru9I TTAA 3 cut(s) 207, 255, 784
TseFI GTSAC 1 cut(s) 305
TseI GCWGC 4 cut(s) 179, 182, 554, 704
Tsp45I GTSAC 1 cut(s) 305
TspDTI ATGAA 2 cut(s) 273, 351
Tth111I GACNNNGTC 1 cut(s) 586
Van91I CCANNNNNTGG 1 cut(s) 470
VpaK11BI GGWCC 1 cut(s) 473
VspI ATTAAT 1 cut(s) 255
XspI CTAG 2 cut(s) 623, 696
ZraI GACGTC 1 cut(s) 588
ZrmI AGTACT 1 cut(s) 621
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.