Prupe.1G140900_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0016307
Physical Location & Seq
Reverse (-)
11089261 .. 11090729
1469 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G140900.1

Sequence Viewer

Length: 744 bp
ATGGGTTGTGGGGAATCAAAACTGGCGGTTGCCACCAGCAACACCATCCTCCGCCGCAAGAAATCCAATGTTGGGGGCTCTTCCAAGAAGAGCAAAGACATCGAAACCGTCCTGGAAAACGTGGACAACGGCAGCTCAACGGTGCAACAACCAGCAGATTGTAAGAGCAGCGAACAAGTACTCGACAAGGATCGTGAGAATATTAATGTAAATAACAATGTTGGTGGCGGCGAGCCAGTGGCGACTGAGGAGAAAGCGAAGGACATCATTGTAAATAACGAAGATGGAGATTATGAAGACGATGGTGATAAAGAATCCTTGGACAAAAGTAACAAAGAAGAGCACGGTGAGGCTGCGGAGAGGCTGATCACCCACGGCTCCCCGAACCGTTTCTTTTCGTCTAGGAAATTAGATGAGGAAGGAATTGATGGGATTATTTCGGAGGGCCGGTCTGGAACGTCTGACTATTACACTCCCCGCCATGGAGCCGGCAGCAAGGGTAGCTTGTACTTCAAGGTAGACGATGATATTCTAGAAGACAACAAAGAATTGGGTTTGGAAGCAGAAGAAACGAAAGCCCCAGAGACACAACAAAATGAAGAGCCCGTAAAACCGGAGGAGAATTTGGTGAAGGAAGCAGAAGTGGCAGTCACAACAGCCATTGCTGAACCCAAAGTGGTAGAACCCAAAGTTTCTATCCTTGATGAAGAAGAGAAGAATAATCTGAGTCTGAAAACAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

248

Amino Acids

26.91

Weight (kDa)

4.56

Isoelectric Point (pI)

45.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016307)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g17371
malus_domestica MD13G1172700.v1.1 MD16G1174200.v1.1
prunus_persica Prupe.1G140900_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0421301
rosa_laevigata RLG00000007699
rosa_multiflora Rmu_sc0004892.1_g000010 Rmu_sc0007721.1_g000001
rosa_roxburghii Rroxscaffold_5G00363530
rosa_rugosa Rorug04G0169200
rosa_samantha Rh4AG230600 Rh4BG233600 Rh4CG244800 Rh4DG229300
rosa_wichuraiana Rw4G020320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 519
AciI CCGC 6 cut(s) 26, 52, 55, 228, 356, 478
AclWI GGATC 1 cut(s) 198
AcsI RAATTY 1 cut(s) 622
AfaI GTAC 2 cut(s) 180, 509
AfiI CCNNNNNNNGG 2 cut(s) 72, 482
AgsI TTSAA 1 cut(s) 514
AjnI CCWGG 1 cut(s) 111
AluBI AGCT 2 cut(s) 135, 504
AluI AGCT 2 cut(s) 135, 504
Alw21I GWGCWC 1 cut(s) 345
Alw26I GTCTC 1 cut(s) 578
AlwI GGATC 1 cut(s) 198
AoxI GGCC 1 cut(s) 445
ApeKI GCWGC 4 cut(s) 132, 168, 353, 492
ApoI RAATTY 1 cut(s) 622
AseI ATTAAT 1 cut(s) 204
Asp700I GAANNNNTTC 1 cut(s) 389
AspS9I GGNCC 1 cut(s) 445
AsuHPI GGTGA 4 cut(s) 317, 359, 361, 640
BanII GRGCYC 2 cut(s) 80, 606
BbsI GAAGAC 2 cut(s) 303, 543
Bbv12I GWGCWC 1 cut(s) 345
BbvI GCAGC 4 cut(s) 144, 180, 340, 504
BccI CCATC 4 cut(s) 53, 278, 296, 422
BceAI ACGGC 2 cut(s) 145, 391
BcgI CGANNNNNNTGC 2 cut(s) 82, 116
BciT130I CCWGG 1 cut(s) 113
BclI TGATCA 1 cut(s) 366
BcoDI GTCTC 1 cut(s) 578
BfaI CTAG 2 cut(s) 402, 533
BisI GCNGC 6 cut(s) 55, 133, 169, 229, 354, 493
BlsI GCNGC 6 cut(s) 56, 134, 170, 230, 355, 494
BmcAI AGTACT 1 cut(s) 180
Bme1390I CCNGG 1 cut(s) 113
BmgT120I GGNCC 1 cut(s) 445
BmiI GGNNCC 2 cut(s) 379, 487
BmrFI CCNGG 1 cut(s) 113
BpiI GAAGAC 2 cut(s) 303, 543
BsaJI CCNNGG 3 cut(s) 318, 373, 481
BsaWI WCCGGW 1 cut(s) 613
BsaXI ACNNNNNCTCC 2 cut(s) 434, 464
Bsc4I CCNNNNNNNGG 2 cut(s) 72, 482
Bse118I RCCGGY 2 cut(s) 447, 488
Bse1I ACTGG 2 cut(s) 27, 236
Bse3DI GCAATG 1 cut(s) 660
BseBI CCWGG 1 cut(s) 113
BseDI CCNNGG 3 cut(s) 318, 373, 481
BseGI GGATG 1 cut(s) 45
BseLI CCNNNNNNNGG 2 cut(s) 72, 482
BseMI GCAATG 1 cut(s) 660
BseMII CTCAG 2 cut(s) 237, 716
BseNI ACTGG 2 cut(s) 27, 236
BseRI GAGGAG 2 cut(s) 263, 632
BseXI GCAGC 4 cut(s) 144, 180, 340, 504
BshFI GGCC 1 cut(s) 447
BsiHKAI GWGCWC 1 cut(s) 345
BsiSI CCGG 3 cut(s) 448, 489, 614
BslI CCNNNNNNNGG 2 cut(s) 72, 482
BsmAI GTCTC 1 cut(s) 578
BsnI GGCC 1 cut(s) 447
Bsp1286I GDGCHC 3 cut(s) 80, 345, 606
Bsp143I GATC 2 cut(s) 190, 366
Bsp19I CCATGG 1 cut(s) 481
BspACI CCGC 6 cut(s) 26, 52, 55, 228, 356, 478
BspANI GGCC 1 cut(s) 447
BspCNI CTCAG 2 cut(s) 238, 717
BspLI GGNNCC 2 cut(s) 379, 487
BspPI GGATC 1 cut(s) 198
BspQI GCTCTTC 4 cut(s) 83, 85, 333, 594
BsrDI GCAATG 1 cut(s) 660
BsrFI RCCGGY 2 cut(s) 447, 488
BsrI ACTGG 2 cut(s) 27, 236
BssAI RCCGGY 2 cut(s) 447, 488
BssECI CCNNGG 3 cut(s) 318, 373, 481
BssMI GATC 2 cut(s) 190, 366
BssT1I CCWWGG 2 cut(s) 318, 481
Bst2UI CCWGG 1 cut(s) 113
Bst4CI ACNGT 4 cut(s) 109, 142, 347, 389
Bst6I CTCTTC 5 cut(s) 83, 85, 333, 594, 705
BstC8I GCNNGC 2 cut(s) 233, 490
BstDEI CTNAG 2 cut(s) 246, 725
BstDSI CCRYGG 2 cut(s) 373, 481
BstF5I GGATG 1 cut(s) 45
BstKTI GATC 2 cut(s) 193, 369
BstMAI GTCTC 1 cut(s) 578
BstMBI GATC 2 cut(s) 190, 366
BstMWI GCNNNNNNNGC 2 cut(s) 501, 644
BstNI CCWGG 1 cut(s) 113
BstSCI CCNGG 1 cut(s) 111
BstV1I GCAGC 4 cut(s) 144, 180, 340, 504
BstV2I GAAGAC 2 cut(s) 303, 543
BsuRI GGCC 1 cut(s) 447
BtgI CCRYGG 2 cut(s) 373, 481
BtsCI GGATG 1 cut(s) 45
BtsIMutI CAGTG 1 cut(s) 243
Cac8I GCNNGC 2 cut(s) 233, 490
Cfr10I RCCGGY 2 cut(s) 447, 488
Cfr13I GGNCC 1 cut(s) 445
Csp6I GTAC 2 cut(s) 179, 508
CspCI CAANNNNNGTGG 2 cut(s) 205, 240
CviAII CATG 1 cut(s) 482
CviQI GTAC 2 cut(s) 179, 508
DdeI CTNAG 2 cut(s) 246, 725
DpnI GATC 2 cut(s) 192, 368
DpnII GATC 2 cut(s) 190, 366
Eam1104I CTCTTC 5 cut(s) 83, 85, 333, 594, 705
EarI CTCTTC 5 cut(s) 83, 85, 333, 594, 705
EciI GGCGGA 1 cut(s) 41
Eco130I CCWWGG 2 cut(s) 318, 481
Eco24I GRGCYC 2 cut(s) 80, 606
EcoRII CCWGG 1 cut(s) 111
EcoT14I CCWWGG 2 cut(s) 318, 481
EcoT38I GRGCYC 2 cut(s) 80, 606
ErhI CCWWGG 2 cut(s) 318, 481
FaeI CATG 1 cut(s) 485
FaiI YATR 2 cut(s) 294, 483
FalI AAGNNNNNCTT 2 cut(s) 488, 520
FatI CATG 1 cut(s) 481
FauI CCCGC 1 cut(s) 485
FbaI TGATCA 1 cut(s) 366
FblI GTMKAC 1 cut(s) 519
Fnu4HI GCNGC 6 cut(s) 55, 133, 169, 229, 354, 493
FokI GGATG 1 cut(s) 32
FriOI GRGCYC 2 cut(s) 80, 606
Fsp4HI GCNGC 6 cut(s) 55, 133, 169, 229, 354, 493
FspBI CTAG 2 cut(s) 402, 533
GluI GCNGC 6 cut(s) 55, 133, 169, 229, 354, 493
HaeIII GGCC 1 cut(s) 447
HapII CCGG 3 cut(s) 448, 489, 614
Hin1II CATG 1 cut(s) 485
HinfI GANTC 3 cut(s) 14, 314, 727
HpaII CCGG 3 cut(s) 448, 489, 614
HphI GGTGA 4 cut(s) 317, 359, 361, 640
Hpy166II GTNNAC 2 cut(s) 124, 520
Hpy188I TCNGA 4 cut(s) 442, 463, 726, 732
Hpy188III TCNNGA 3 cut(s) 194, 453, 533
Hpy8I GTNNAC 2 cut(s) 124, 520
HpyAV CCTTC 3 cut(s) 253, 413, 625
HpyCH4III ACNGT 4 cut(s) 109, 142, 347, 389
HpyCH4IV ACGT 2 cut(s) 120, 458
HpyCH4V TGCA 1 cut(s) 145
HpyF10VI GCNNNNNNNGC 2 cut(s) 501, 644
HpyF3I CTNAG 2 cut(s) 246, 725
HpySE526I ACGT 2 cut(s) 120, 458
Hsp92II CATG 1 cut(s) 485
KroI GCCGGC 1 cut(s) 488
KroNI GCCGGC 1 cut(s) 490
Ksp22I TGATCA 1 cut(s) 366
Kzo9I GATC 2 cut(s) 190, 366
LguI GCTCTTC 4 cut(s) 83, 85, 333, 594
LmnI GCTCC 2 cut(s) 383, 485
Lsp1109I GCAGC 4 cut(s) 144, 180, 340, 504
MaeI CTAG 2 cut(s) 402, 533
MaeII ACGT 2 cut(s) 120, 458
MaeIII GTNAC 2 cut(s) 329, 649
MalI GATC 2 cut(s) 192, 368
MboI GATC 2 cut(s) 190, 366
MhlI GDGCHC 3 cut(s) 80, 345, 606
MluCI AATT 4 cut(s) 407, 423, 548, 622
MlyI GAGTC 1 cut(s) 736
MnlI CCTC 7 cut(s) 59, 241, 343, 354, 409, 436, 610
MroNI GCCGGC 1 cut(s) 488
MroXI GAANNNNTTC 1 cut(s) 389
MseI TTAA 1 cut(s) 204
MspI CCGG 3 cut(s) 448, 489, 614
MspR9I CCNGG 1 cut(s) 113
MvaI CCWGG 1 cut(s) 113
MwoI GCNNNNNNNGC 2 cut(s) 501, 644
NaeI GCCGGC 1 cut(s) 490
NcoI CCATGG 1 cut(s) 481
NdeII GATC 2 cut(s) 190, 366
NgoMIV GCCGGC 1 cut(s) 488
NlaIII CATG 1 cut(s) 485
NlaIV GGNNCC 2 cut(s) 379, 487
NmuCI GTSAC 1 cut(s) 649
PciSI GCTCTTC 4 cut(s) 83, 85, 333, 594
PdiI GCCGGC 1 cut(s) 490
PdmI GAANNNNTTC 1 cut(s) 389
PfeI GAWTC 2 cut(s) 14, 314
PfoI TCCNGGA 1 cut(s) 111
PkrI GCNGC 6 cut(s) 56, 134, 170, 230, 355, 494
PleI GAGTC 1 cut(s) 735
PpsI GAGTC 1 cut(s) 735
PshBI ATTAAT 1 cut(s) 204
Psp6I CCWGG 1 cut(s) 111
PspGI CCWGG 1 cut(s) 111
PspN4I GGNNCC 2 cut(s) 379, 487
PspPI GGNCC 1 cut(s) 445
RsaI GTAC 2 cut(s) 180, 509
RsaNI GTAC 2 cut(s) 179, 508
SapI GCTCTTC 4 cut(s) 83, 85, 333, 594
SaqAI TTAA 1 cut(s) 204
SatI GCNGC 6 cut(s) 55, 133, 169, 229, 354, 493
Sau3AI GATC 2 cut(s) 190, 366
Sau96I GGNCC 1 cut(s) 445
ScaI AGTACT 1 cut(s) 180
SchI GAGTC 1 cut(s) 736
ScrFI CCNGG 1 cut(s) 113
SduI GDGCHC 3 cut(s) 80, 345, 606
SetI ASST 5 cut(s) 123, 137, 461, 506, 519
Sse9I AATT 4 cut(s) 407, 423, 548, 622
SsiI CCGC 6 cut(s) 26, 52, 55, 228, 356, 478
SspI AATATT 1 cut(s) 202
SspMI CTAG 2 cut(s) 402, 533
StyD4I CCNGG 1 cut(s) 111
StyI CCWWGG 2 cut(s) 318, 481
TaaI ACNGT 4 cut(s) 109, 142, 347, 389
TaiI ACGT 2 cut(s) 123, 461
TaqI TCGA 2 cut(s) 102, 183
TasI AATT 4 cut(s) 407, 423, 548, 622
TatI WGTACW 2 cut(s) 178, 507
TauI GCSGC 2 cut(s) 57, 231
TfiI GAWTC 2 cut(s) 14, 314
Tru1I TTAA 1 cut(s) 204
Tru9I TTAA 1 cut(s) 204
TscAI CASTG 1 cut(s) 243
TseFI GTSAC 1 cut(s) 649
TseI GCWGC 4 cut(s) 132, 168, 353, 492
Tsp45I GTSAC 1 cut(s) 649
TspDTI ATGAA 3 cut(s) 309, 612, 720
TspRI CASTG 1 cut(s) 243
VspI ATTAAT 1 cut(s) 204
XapI RAATTY 1 cut(s) 622
XbaI TCTAGA 1 cut(s) 532
XmiI GTMKAC 1 cut(s) 519
XmnI GAANNNNTTC 1 cut(s) 389
XspI CTAG 2 cut(s) 402, 533
ZrmI AGTACT 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.