Rh4CG244800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0016307
Physical Location & Seq
Forward (+)
49315126 .. 49317056
1931 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG244800.1

Sequence Viewer

Length: 756 bp
ATGGGCTGTGGGGATTCAAAGCTCGCCGTTGCCACCAGCAACGCCCTCCTGCGCCGCAAGAAATCCAATGCCGGGGAGACCACCAAGAACAGCAAAGACATCGAAACCAACCACAAAACCGCCACAGATTGCAACAACAGCATAGCAAACTCAAAGCAACAACAACAACAACATGAGCAAGAAGCTGCAGCAAGCCGTGGTGAAAAAGTTGTTAATAAGAACAATGTGGATGTTATGGTGGCTGATGAGGTGAAGGACATTAATGAAAACAAAAAGGAAAATGGAGATGACAAAGAAATAATAGACAAAGGTGACAACAAGGTTTTAGTGGTTTCGGAGCATGAAGCCGGGAGATTTATAACATCTGAAGACTCACCAAGGGATTTCTTTTCGTCAAGGAAATTAGATGAGGAAGGGATTGATGGGATTATTTCTGAGGGAAGATCTGGAGCGTCCGATTATTACACTCCACGCCATGGACCTGGAAGTAAGGGAAACTCGTTCTTCAAGGTGGATGAGGAAAGCAAAGTTGTAGGGGAGGACAAAGAATTGTTGCCTGCTGCTGAAGAAACAAAACTAGCTGTTGAGACGACGTCCTCAACAGAAAATAAAGGAGAGCCAGCAGTACTAGTGGAGGAGAAATTGATAAAGGAAACGGCAGAAGTGGAAATCAAAACCGCTATTGTTGAAGCCAAAGTTTCTAGCCCTGCTGCTGAGGAAGAGAAGAAAGAAGAGAAGAAAGAAGAGAAGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

251

Amino Acids

27.43

Weight (kDa)

4.92

Isoelectric Point (pI)

43.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016307)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g17371
malus_domestica MD13G1172700.v1.1 MD16G1174200.v1.1
prunus_persica Prupe.1G140900_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0421301
rosa_laevigata RLG00000007699
rosa_multiflora Rmu_sc0004892.1_g000010 Rmu_sc0007721.1_g000001
rosa_roxburghii Rroxscaffold_5G00363530
rosa_rugosa Rorug04G0169200
rosa_samantha Rh4AG230600 Rh4BG233600 Rh4CG244800 Rh4DG229300
rosa_wichuraiana Rw4G020320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 359
AatII GACGTC 1 cut(s) 596
AccB7I CCANNNNNTGG 1 cut(s) 476
AciI CCGC 3 cut(s) 55, 120, 678
AcuI CTGAAG 2 cut(s) 387, 585
AcyI GRCGYC 1 cut(s) 593
AfaI GTAC 1 cut(s) 627
AfiI CCNNNNNNNGG 2 cut(s) 72, 476
AgsI TTSAA 3 cut(s) 18, 508, 689
AhlI ACTAGT 1 cut(s) 628
AjnI CCWGG 1 cut(s) 481
AluBI AGCT 3 cut(s) 22, 185, 581
AluI AGCT 3 cut(s) 22, 185, 581
Alw26I GTCTC 2 cut(s) 71, 581
ApeKI GCWGC 4 cut(s) 185, 188, 560, 710
AseI ATTAAT 1 cut(s) 261
AspLEI GCGC 1 cut(s) 54
AspS9I GGNCC 1 cut(s) 479
AsuC2I CCSGG 2 cut(s) 73, 349
AsuHPI GGTGA 4 cut(s) 212, 262, 323, 366
AvaII GGWCC 1 cut(s) 479
BbsI GAAGAC 1 cut(s) 375
BbvCI CCTCAGC 1 cut(s) 714
BbvI GCAGC 4 cut(s) 172, 200, 547, 697
BccI CCATC 1 cut(s) 416
BceAI ACGGC 3 cut(s) 11, 180, 672
BcgI CGANNNNNNTGC 2 cut(s) 82, 116
BciT130I CCWGG 1 cut(s) 483
BcnI CCSGG 2 cut(s) 73, 349
BcoDI GTCTC 2 cut(s) 71, 581
BcuI ACTAGT 1 cut(s) 628
BfaI CTAG 3 cut(s) 578, 629, 702
BfmI CTRYAG 1 cut(s) 186
BglII AGATCT 1 cut(s) 443
BisI GCNGC 5 cut(s) 55, 186, 189, 561, 711
BlsI GCNGC 5 cut(s) 56, 187, 190, 562, 712
BmcAI AGTACT 1 cut(s) 627
Bme1390I CCNGG 3 cut(s) 73, 349, 483
Bme18I GGWCC 1 cut(s) 479
BmgT120I GGNCC 1 cut(s) 479
BmrFI CCNGG 3 cut(s) 73, 349, 483
BpiI GAAGAC 1 cut(s) 375
BpmI CTGGAG 1 cut(s) 468
Bpu10I CCTNAGC 1 cut(s) 714
BpuMI CCSGG 2 cut(s) 73, 349
BsaHI GRCGYC 1 cut(s) 593
BsaI GGTCTC 1 cut(s) 71
BsaJI CCNNGG 4 cut(s) 72, 196, 377, 475
Bsc4I CCNNNNNNNGG 2 cut(s) 72, 476
BseBI CCWGG 1 cut(s) 483
BseDI CCNNGG 4 cut(s) 72, 196, 377, 475
BseGI GGATG 2 cut(s) 235, 520
BseLI CCNNNNNNNGG 2 cut(s) 72, 476
BseMII CTCAG 2 cut(s) 426, 705
BseRI GAGGAG 1 cut(s) 650
BseXI GCAGC 4 cut(s) 172, 200, 547, 697
BsiSI CCGG 2 cut(s) 72, 348
BslI CCNNNNNNNGG 2 cut(s) 72, 476
BsmAI GTCTC 2 cut(s) 71, 581
BsmBI CGTCTC 1 cut(s) 581
Bso31I GGTCTC 1 cut(s) 71
Bsp143I GATC 1 cut(s) 443
Bsp19I CCATGG 1 cut(s) 475
BspACI CCGC 3 cut(s) 55, 120, 678
BspCNI CTCAG 2 cut(s) 427, 706
BspMAI CTGCAG 1 cut(s) 190
BspTNI GGTCTC 1 cut(s) 71
BssECI CCNNGG 4 cut(s) 72, 196, 377, 475
BssMI GATC 1 cut(s) 443
BssNI GRCGYC 1 cut(s) 593
BssT1I CCWWGG 2 cut(s) 377, 475
Bst2UI CCWGG 1 cut(s) 483
Bst6I CTCTTC 4 cut(s) 714, 726, 738, 743
BstACI GRCGYC 1 cut(s) 593
BstC8I GCNNGC 4 cut(s) 24, 193, 558, 621
BstDEI CTNAG 2 cut(s) 435, 714
BstDSI CCRYGG 2 cut(s) 196, 475
BstF5I GGATG 2 cut(s) 235, 520
BstHHI GCGC 1 cut(s) 54
BstKTI GATC 1 cut(s) 446
BstMAI GTCTC 2 cut(s) 71, 581
BstMBI GATC 1 cut(s) 443
BstMWI GCNNNNNNNGC 1 cut(s) 138
BstNI CCWGG 1 cut(s) 483
BstSCI CCNGG 3 cut(s) 71, 347, 481
BstSFI CTRYAG 1 cut(s) 186
BstV1I GCAGC 4 cut(s) 172, 200, 547, 697
BstV2I GAAGAC 1 cut(s) 375
BstX2I RGATCY 1 cut(s) 443
BstXI CCANNNNNNTGG 1 cut(s) 482
BstYI RGATCY 1 cut(s) 443
BtgI CCRYGG 2 cut(s) 196, 475
BtsCI GGATG 2 cut(s) 235, 520
Cac8I GCNNGC 4 cut(s) 24, 193, 558, 621
CfoI GCGC 1 cut(s) 54
Cfr13I GGNCC 1 cut(s) 479
CseI GACGC 1 cut(s) 441
Csp6I GTAC 1 cut(s) 626
CviAII CATG 3 cut(s) 173, 341, 476
CviQI GTAC 1 cut(s) 626
DdeI CTNAG 2 cut(s) 435, 714
DpnI GATC 1 cut(s) 445
DpnII GATC 1 cut(s) 443
Eam1104I CTCTTC 4 cut(s) 714, 726, 738, 743
EarI CTCTTC 4 cut(s) 714, 726, 738, 743
Eco130I CCWWGG 2 cut(s) 377, 475
Eco31I GGTCTC 1 cut(s) 71
Eco47I GGWCC 1 cut(s) 479
Eco57I CTGAAG 2 cut(s) 387, 585
EcoRII CCWGG 1 cut(s) 481
EcoT14I CCWWGG 2 cut(s) 377, 475
ErhI CCWWGG 2 cut(s) 377, 475
Esp3I CGTCTC 1 cut(s) 581
FaeI CATG 3 cut(s) 176, 344, 479
FaiI YATR 6 cut(s) 143, 174, 236, 342, 359, 477
FatI CATG 3 cut(s) 172, 340, 475
Fnu4HI GCNGC 5 cut(s) 55, 186, 189, 561, 711
FokI GGATG 2 cut(s) 242, 527
Fsp4HI GCNGC 5 cut(s) 55, 186, 189, 561, 711
FspBI CTAG 3 cut(s) 578, 629, 702
GlaI GCGC 1 cut(s) 53
GluI GCNGC 5 cut(s) 55, 186, 189, 561, 711
GsuI CTGGAG 1 cut(s) 468
HapII CCGG 2 cut(s) 72, 348
HgaI GACGC 1 cut(s) 441
HhaI GCGC 1 cut(s) 54
Hin1I GRCGYC 1 cut(s) 593
Hin1II CATG 3 cut(s) 176, 344, 479
Hin6I GCGC 1 cut(s) 52
HinP1I GCGC 1 cut(s) 52
HinfI GANTC 2 cut(s) 14, 371
HpaII CCGG 2 cut(s) 72, 348
HphI GGTGA 4 cut(s) 212, 262, 323, 366
Hpy188I TCNGA 4 cut(s) 337, 367, 436, 457
Hpy188III TCNNGA 1 cut(s) 447
Hpy99I CGWCG 1 cut(s) 595
HpyAV CCTTC 2 cut(s) 247, 407
HpyCH4IV ACGT 1 cut(s) 593
HpyCH4V TGCA 2 cut(s) 132, 188
HpyF10VI GCNNNNNNNGC 1 cut(s) 138
HpyF3I CTNAG 2 cut(s) 435, 714
HpySE526I ACGT 1 cut(s) 593
Hsp92I GRCGYC 1 cut(s) 593
Hsp92II CATG 3 cut(s) 176, 344, 479
HspAI GCGC 1 cut(s) 52
Kzo9I GATC 1 cut(s) 443
LmnI GCTCC 2 cut(s) 337, 449
Lsp1109I GCAGC 4 cut(s) 172, 200, 547, 697
MaeI CTAG 3 cut(s) 578, 629, 702
MaeII ACGT 1 cut(s) 593
MaeIII GTNAC 1 cut(s) 311
MalI GATC 1 cut(s) 445
MboI GATC 1 cut(s) 443
MboII GAAGA 9 cut(s) 380, 453, 496, 578, 731, 736, 743, 748, 755
MflI RGATCY 1 cut(s) 443
MluCI AATT 3 cut(s) 401, 548, 641
MlyI GAGTC 1 cut(s) 365
MnlI CCTC 9 cut(s) 56, 241, 403, 430, 511, 532, 607, 628, 709
MseI TTAA 3 cut(s) 213, 261, 754
MspI CCGG 2 cut(s) 72, 348
MspR9I CCNGG 3 cut(s) 73, 349, 483
MvaI CCWGG 1 cut(s) 483
MwoI GCNNNNNNNGC 1 cut(s) 138
NciI CCSGG 2 cut(s) 73, 349
NcoI CCATGG 1 cut(s) 475
NdeII GATC 1 cut(s) 443
NlaIII CATG 3 cut(s) 176, 344, 479
NmuCI GTSAC 1 cut(s) 311
PfeI GAWTC 1 cut(s) 14
PflFI GACNNNGTC 1 cut(s) 592
PflMI CCANNNNNTGG 1 cut(s) 476
PkrI GCNGC 5 cut(s) 56, 187, 190, 562, 712
PleI GAGTC 1 cut(s) 365
PpsI GAGTC 1 cut(s) 365
PshBI ATTAAT 1 cut(s) 261
PsiI TTATAA 1 cut(s) 359
Psp6I CCWGG 1 cut(s) 481
PspGI CCWGG 1 cut(s) 481
PspPI GGNCC 1 cut(s) 479
PstI CTGCAG 1 cut(s) 190
PsuI RGATCY 1 cut(s) 443
PsyI GACNNNGTC 1 cut(s) 592
RsaI GTAC 1 cut(s) 627
RsaNI GTAC 1 cut(s) 626
SaqAI TTAA 3 cut(s) 213, 261, 754
SatI GCNGC 5 cut(s) 55, 186, 189, 561, 711
Sau3AI GATC 1 cut(s) 443
Sau96I GGNCC 1 cut(s) 479
ScaI AGTACT 1 cut(s) 627
SchI GAGTC 1 cut(s) 365
ScrFI CCNGG 3 cut(s) 73, 349, 483
SetI ASST 9 cut(s) 24, 187, 252, 313, 324, 484, 513, 583, 596
SfcI CTRYAG 1 cut(s) 186
SinI GGWCC 1 cut(s) 479
SpeI ACTAGT 1 cut(s) 628
Sse9I AATT 3 cut(s) 401, 548, 641
SsiI CCGC 3 cut(s) 55, 120, 678
SspMI CTAG 3 cut(s) 578, 629, 702
StyD4I CCNGG 3 cut(s) 71, 347, 481
StyI CCWWGG 2 cut(s) 377, 475
TaiI ACGT 1 cut(s) 596
TaqI TCGA 1 cut(s) 102
TasI AATT 3 cut(s) 401, 548, 641
TatI WGTACW 1 cut(s) 625
TauI GCSGC 1 cut(s) 57
TfiI GAWTC 1 cut(s) 14
Tru1I TTAA 3 cut(s) 213, 261, 754
Tru9I TTAA 3 cut(s) 213, 261, 754
TseFI GTSAC 1 cut(s) 311
TseI GCWGC 4 cut(s) 185, 188, 560, 710
Tsp45I GTSAC 1 cut(s) 311
TspDTI ATGAA 2 cut(s) 279, 357
Tth111I GACNNNGTC 1 cut(s) 592
Van91I CCANNNNNTGG 1 cut(s) 476
VpaK11BI GGWCC 1 cut(s) 479
VspI ATTAAT 1 cut(s) 261
XspI CTAG 3 cut(s) 578, 629, 702
ZraI GACGTC 1 cut(s) 594
ZrmI AGTACT 1 cut(s) 627
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.