RLG00000007699

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0016307
Physical Location & Seq
Reverse (-)
20031754 .. 20033457
1704 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007699

Sequence Viewer

Length: 777 bp
ATGGGCTGCGGGGACTCAAAGCTCGCCGTTGCCACCAGCAACGCCCTCCTGCGCGGCAAGAAATCCAATGCCGGGGAGACCACCAAGAACAGCAAAGACATCGAAACCAAACACAAAACCACCACAGATTGCAACAACAGCATAGCAAACTCAACGCAACAACAACAACAACAACACGAGCAAGAAGCTGCAGCAAGCCGTGGTGAAAAAGTTGTTAATAAGAACAATGTGGATGTTATGGTGGCTGATGGGGTGAAGGACATTAATGAAAACAAAAAGGAAAATGGAGATGACAAAGAAATAATAGACAAAGGTGACAACAAGGTTTTAGTGGTTTCGGAGCATGAAGCCGGGAGATTTATAACATCTGAAGACTCACCAAGGGATTTCTTTTCGTCAAGGAAATTGGATGAGGAAGGGATTGATGGGATTATTTCTGAGGGAAGATCTGGAGCGTCCGATTATTACACTCCACGCCATGGATCTGGAAGCAAGGGAAACTCGTTTTTCAAGGTGGATGAGGAAAGCAAAGTTGTAGAGGAGGACAAAGAATTGTTGCCTAGGCCTGCTGCTGAAGAAACAAAACTAGCTGTTGAGACGACGTCCTCAACAGAAAATAAAGGAGAGCCAGCAGTACTAGTGGAGGAGAAATTGGTAAAGGAAACTGCAGAAGTGGAAATCAAAACCGCTACTGTTGAAGCCAAAGTTTCTAGCCCTGCTGCTGAGGAAGAGAAGAAAGAAGAGAAGAAAGTAGAGAAGAAAGAAGAGAAGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

259

Amino Acids

28.18

Weight (kDa)

4.99

Isoelectric Point (pI)

42.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016307)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g17371
malus_domestica MD13G1172700.v1.1 MD16G1174200.v1.1
prunus_persica Prupe.1G140900_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0421301
rosa_laevigata RLG00000007699
rosa_multiflora Rmu_sc0004892.1_g000010 Rmu_sc0007721.1_g000001
rosa_roxburghii Rroxscaffold_5G00363530
rosa_rugosa Rorug04G0169200
rosa_samantha Rh4AG230600 Rh4BG233600 Rh4CG244800 Rh4DG229300
rosa_wichuraiana Rw4G020320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 362
AatII GACGTC 1 cut(s) 605
AccB7I CCANNNNNTGG 1 cut(s) 479
AccII CGCG 1 cut(s) 54
AciI CCGC 3 cut(s) 9, 54, 687
AclWI GGATC 1 cut(s) 490
AcuI CTGAAG 2 cut(s) 390, 594
AcyI GRCGYC 1 cut(s) 602
AfaI GTAC 1 cut(s) 636
AfiI CCNNNNNNNGG 2 cut(s) 72, 479
AgsI TTSAA 2 cut(s) 511, 698
AhlI ACTAGT 1 cut(s) 637
AluBI AGCT 3 cut(s) 22, 188, 590
AluI AGCT 3 cut(s) 22, 188, 590
Alw26I GTCTC 2 cut(s) 71, 590
AlwI GGATC 1 cut(s) 490
AoxI GGCC 1 cut(s) 563
ApeKI GCWGC 5 cut(s) 6, 188, 191, 569, 719
AseI ATTAAT 1 cut(s) 264
AspA2I CCTAGG 1 cut(s) 560
AspLEI GCGC 1 cut(s) 54
AsuC2I CCSGG 2 cut(s) 73, 352
AsuHPI GGTGA 4 cut(s) 215, 265, 326, 369
AvrII CCTAGG 1 cut(s) 560
BauI CACGAG 1 cut(s) 176
BbsI GAAGAC 1 cut(s) 378
BbvCI CCTCAGC 1 cut(s) 723
BbvI GCAGC 4 cut(s) 175, 203, 556, 706
BccI CCATC 2 cut(s) 242, 419
BceAI ACGGC 2 cut(s) 11, 183
BcgI CGANNNNNNTGC 2 cut(s) 82, 116
BcnI CCSGG 2 cut(s) 73, 352
BcoDI GTCTC 2 cut(s) 71, 590
BcuI ACTAGT 1 cut(s) 637
BfaI CTAG 4 cut(s) 561, 587, 638, 711
BfmI CTRYAG 2 cut(s) 189, 666
BglII AGATCT 1 cut(s) 446
BisI GCNGC 6 cut(s) 7, 55, 189, 192, 570, 720
BlnI CCTAGG 1 cut(s) 560
BlsI GCNGC 6 cut(s) 8, 56, 190, 193, 571, 721
BmcAI AGTACT 1 cut(s) 636
Bme1390I CCNGG 2 cut(s) 73, 352
BmrFI CCNGG 2 cut(s) 73, 352
BpiI GAAGAC 1 cut(s) 378
BpmI CTGGAG 1 cut(s) 471
Bpu10I CCTNAGC 1 cut(s) 723
BpuMI CCSGG 2 cut(s) 73, 352
BsaHI GRCGYC 1 cut(s) 602
BsaI GGTCTC 1 cut(s) 71
BsaJI CCNNGG 5 cut(s) 72, 199, 380, 478, 560
Bsc4I CCNNNNNNNGG 2 cut(s) 72, 479
BseDI CCNNGG 5 cut(s) 72, 199, 380, 478, 560
BseGI GGATG 3 cut(s) 238, 415, 523
BseLI CCNNNNNNNGG 2 cut(s) 72, 479
BseMII CTCAG 2 cut(s) 429, 714
BseRI GAGGAG 2 cut(s) 554, 659
BseXI GCAGC 4 cut(s) 175, 203, 556, 706
Bsh1236I CGCG 1 cut(s) 54
BshFI GGCC 1 cut(s) 565
BsiSI CCGG 2 cut(s) 72, 351
BslFI GGGAC 1 cut(s) 26
BslI CCNNNNNNNGG 2 cut(s) 72, 479
BsmAI GTCTC 2 cut(s) 71, 590
BsmBI CGTCTC 1 cut(s) 590
BsmFI GGGAC 1 cut(s) 26
BsnI GGCC 1 cut(s) 565
Bso31I GGTCTC 1 cut(s) 71
Bsp143I GATC 2 cut(s) 446, 482
Bsp19I CCATGG 1 cut(s) 478
BspACI CCGC 3 cut(s) 9, 54, 687
BspANI GGCC 1 cut(s) 565
BspCNI CTCAG 2 cut(s) 430, 715
BspFNI CGCG 1 cut(s) 54
BspMAI CTGCAG 2 cut(s) 193, 670
BspPI GGATC 1 cut(s) 490
BspTNI GGTCTC 1 cut(s) 71
BssECI CCNNGG 5 cut(s) 72, 199, 380, 478, 560
BssMI GATC 2 cut(s) 446, 482
BssNI GRCGYC 1 cut(s) 602
BssSI CACGAG 1 cut(s) 176
BssT1I CCWWGG 3 cut(s) 380, 478, 560
Bst2BI CACGAG 1 cut(s) 176
Bst4CI ACNGT 1 cut(s) 694
Bst6I CTCTTC 4 cut(s) 723, 735, 759, 764
BstACI GRCGYC 1 cut(s) 602
BstC8I GCNNGC 4 cut(s) 24, 196, 567, 630
BstDEI CTNAG 2 cut(s) 438, 723
BstDSI CCRYGG 2 cut(s) 199, 478
BstF5I GGATG 3 cut(s) 238, 415, 523
BstFNI CGCG 1 cut(s) 54
BstHHI GCGC 1 cut(s) 54
BstKTI GATC 2 cut(s) 449, 485
BstMAI GTCTC 2 cut(s) 71, 590
BstMBI GATC 2 cut(s) 446, 482
BstMWI GCNNNNNNNGC 1 cut(s) 138
BstSCI CCNGG 2 cut(s) 71, 350
BstSFI CTRYAG 2 cut(s) 189, 666
BstUI CGCG 1 cut(s) 54
BstV1I GCAGC 4 cut(s) 175, 203, 556, 706
BstV2I GAAGAC 1 cut(s) 378
BstX2I RGATCY 2 cut(s) 446, 482
BstXI CCANNNNNNTGG 1 cut(s) 485
BstYI RGATCY 2 cut(s) 446, 482
BsuRI GGCC 1 cut(s) 565
BtgI CCRYGG 2 cut(s) 199, 478
BtsCI GGATG 3 cut(s) 238, 415, 523
Cac8I GCNNGC 4 cut(s) 24, 196, 567, 630
CfoI GCGC 1 cut(s) 54
CseI GACGC 1 cut(s) 444
Csp6I GTAC 1 cut(s) 635
CviAII CATG 2 cut(s) 344, 479
CviQI GTAC 1 cut(s) 635
DdeI CTNAG 2 cut(s) 438, 723
DpnI GATC 2 cut(s) 448, 484
DpnII GATC 2 cut(s) 446, 482
Eam1104I CTCTTC 4 cut(s) 723, 735, 759, 764
EarI CTCTTC 4 cut(s) 723, 735, 759, 764
Eco130I CCWWGG 3 cut(s) 380, 478, 560
Eco147I AGGCCT 1 cut(s) 565
Eco31I GGTCTC 1 cut(s) 71
Eco57I CTGAAG 2 cut(s) 390, 594
EcoT14I CCWWGG 3 cut(s) 380, 478, 560
ErhI CCWWGG 3 cut(s) 380, 478, 560
Esp3I CGTCTC 1 cut(s) 590
FaeI CATG 2 cut(s) 347, 482
FaiI YATR 5 cut(s) 143, 239, 345, 362, 480
FaqI GGGAC 1 cut(s) 26
FatI CATG 2 cut(s) 343, 478
FauI CCCGC 1 cut(s) 2
Fnu4HI GCNGC 6 cut(s) 7, 55, 189, 192, 570, 720
FokI GGATG 3 cut(s) 245, 422, 530
Fsp4HI GCNGC 6 cut(s) 7, 55, 189, 192, 570, 720
FspBI CTAG 4 cut(s) 561, 587, 638, 711
GlaI GCGC 1 cut(s) 53
GluI GCNGC 6 cut(s) 7, 55, 189, 192, 570, 720
GsuI CTGGAG 1 cut(s) 471
HaeIII GGCC 1 cut(s) 565
HapII CCGG 2 cut(s) 72, 351
HgaI GACGC 1 cut(s) 444
HhaI GCGC 1 cut(s) 54
Hin1I GRCGYC 1 cut(s) 602
Hin1II CATG 2 cut(s) 347, 482
Hin6I GCGC 1 cut(s) 52
HinP1I GCGC 1 cut(s) 52
HinfI GANTC 2 cut(s) 14, 374
HpaII CCGG 2 cut(s) 72, 351
HphI GGTGA 4 cut(s) 215, 265, 326, 369
Hpy188I TCNGA 4 cut(s) 340, 370, 439, 460
Hpy188III TCNNGA 2 cut(s) 450, 486
Hpy99I CGWCG 1 cut(s) 604
HpyAV CCTTC 2 cut(s) 250, 410
HpyCH4III ACNGT 1 cut(s) 694
HpyCH4IV ACGT 1 cut(s) 602
HpyCH4V TGCA 3 cut(s) 132, 191, 668
HpyF10VI GCNNNNNNNGC 1 cut(s) 138
HpyF3I CTNAG 2 cut(s) 438, 723
HpySE526I ACGT 1 cut(s) 602
Hsp92I GRCGYC 1 cut(s) 602
Hsp92II CATG 2 cut(s) 347, 482
HspAI GCGC 1 cut(s) 52
Kzo9I GATC 2 cut(s) 446, 482
LmnI GCTCC 2 cut(s) 340, 452
LpnPI CCDG 9 cut(s) 49, 62, 85, 364, 435, 471, 579, 642, 729
Lsp1109I GCAGC 4 cut(s) 175, 203, 556, 706
MaeI CTAG 4 cut(s) 561, 587, 638, 711
MaeII ACGT 1 cut(s) 602
MaeIII GTNAC 1 cut(s) 314
MalI GATC 2 cut(s) 448, 484
MboI GATC 2 cut(s) 446, 482
MboII GAAGA 9 cut(s) 383, 456, 587, 740, 745, 752, 757, 769, 776
MflI RGATCY 2 cut(s) 446, 482
MluCI AATT 3 cut(s) 404, 551, 650
MlyI GAGTC 2 cut(s) 8, 368
MnlI CCTC 9 cut(s) 56, 406, 433, 514, 532, 535, 616, 637, 718
MseI TTAA 3 cut(s) 216, 264, 775
MspI CCGG 2 cut(s) 72, 351
MspR9I CCNGG 2 cut(s) 73, 352
MvnI CGCG 1 cut(s) 54
MwoI GCNNNNNNNGC 1 cut(s) 138
NciI CCSGG 2 cut(s) 73, 352
NcoI CCATGG 1 cut(s) 478
NdeII GATC 2 cut(s) 446, 482
NlaIII CATG 2 cut(s) 347, 482
NmuCI GTSAC 1 cut(s) 314
PceI AGGCCT 1 cut(s) 565
PflFI GACNNNGTC 1 cut(s) 601
PflMI CCANNNNNTGG 1 cut(s) 479
PkrI GCNGC 6 cut(s) 8, 56, 190, 193, 571, 721
PleI GAGTC 2 cut(s) 8, 368
PpsI GAGTC 2 cut(s) 8, 368
PshBI ATTAAT 1 cut(s) 264
PsiI TTATAA 1 cut(s) 362
PstI CTGCAG 2 cut(s) 193, 670
PsuI RGATCY 2 cut(s) 446, 482
PsyI GACNNNGTC 1 cut(s) 601
RsaI GTAC 1 cut(s) 636
RsaNI GTAC 1 cut(s) 635
SaqAI TTAA 3 cut(s) 216, 264, 775
SatI GCNGC 6 cut(s) 7, 55, 189, 192, 570, 720
Sau3AI GATC 2 cut(s) 446, 482
ScaI AGTACT 1 cut(s) 636
SchI GAGTC 2 cut(s) 8, 368
ScrFI CCNGG 2 cut(s) 73, 352
SetI ASST 7 cut(s) 24, 190, 316, 327, 516, 592, 605
SfcI CTRYAG 2 cut(s) 189, 666
SpeI ACTAGT 1 cut(s) 637
Sse9I AATT 3 cut(s) 404, 551, 650
SseBI AGGCCT 1 cut(s) 565
SsiI CCGC 3 cut(s) 9, 54, 687
SspMI CTAG 4 cut(s) 561, 587, 638, 711
StuI AGGCCT 1 cut(s) 565
StyD4I CCNGG 2 cut(s) 71, 350
StyI CCWWGG 3 cut(s) 380, 478, 560
TaaI ACNGT 1 cut(s) 694
TaiI ACGT 1 cut(s) 605
TaqI TCGA 1 cut(s) 102
TasI AATT 3 cut(s) 404, 551, 650
TatI WGTACW 1 cut(s) 634
TauI GCSGC 1 cut(s) 57
Tru1I TTAA 3 cut(s) 216, 264, 775
Tru9I TTAA 3 cut(s) 216, 264, 775
TseFI GTSAC 1 cut(s) 314
TseI GCWGC 5 cut(s) 6, 188, 191, 569, 719
Tsp45I GTSAC 1 cut(s) 314
TspDTI ATGAA 2 cut(s) 282, 360
Tth111I GACNNNGTC 1 cut(s) 601
Van91I CCANNNNNTGG 1 cut(s) 479
VspI ATTAAT 1 cut(s) 264
XmaJI CCTAGG 1 cut(s) 560
XspI CTAG 4 cut(s) 561, 587, 638, 711
ZraI GACGTC 1 cut(s) 603
ZrmI AGTACT 1 cut(s) 636
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.