Rh4DG229300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0016307
Physical Location & Seq
Forward (+)
43476514 .. 43478497
1984 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG229300.1

Sequence Viewer

Length: 765 bp
ATGGGCTGTGGGGATTCAAAGCTCGCGGTTGCCACCAGCAACGCCCTCCTGCGCGGCAAGAAATCCAATGCCGGGGAGACCACCAAGAACAGCAAAGACATCAAAACCAACCACAAAACCGCCACAGATTGCAACAACAGCATAGCAAACTCAACGCAACAACAACAACATGAGCAAGAAGCTGCAGCAAGCCGTGGTGAAAAAGTTGTTAATAAGAACAATGTGGATGTTATGGTGGCTGATGAGGTGAAGGACATTAATGAAAACAAAAAGGAAAATGGAGATGACAAAGAAATAATAGACAAAGGTGACAACAAGGTTTTAGTGGTTTCGGAGCATGAAGCCGGGAGATTTATAACATCTGAAGACTCACCAAGGGATTTCTTTTCGTCAAGGAAATTAGATGAGGAAGGGATTGATGGGATTATTTCTGAGGGAAGATCTGGAGCGTCCGATTATTACACTCCACGCCATGGACCTGGAAGTAAGGGAAACTCGTTCTTCAAGGTGGATGAGGAAAGCAAAGTTGTAGAGGAGGACAAAGAATTGTTGGCTGCTGCTGAAGAAACAAAACTAGCTGTTGAGACGACGTCCTCAACAGAAAATAAAGGAGAGACAGCAGTACTAGTGGAGGAGAAATTGATAAAGGAAACTGCAGAAGTGGAAATCAAAACCGCTACTGTTGAAGCCAAAGTTTCTAGCCCTGCTGCTGAGGAAGAGAAGAAAGAAGAGAAGAAAGTAGAGACGAAAGAAGAGAAGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

254

Amino Acids

27.67

Weight (kDa)

4.89

Isoelectric Point (pI)

34.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016307)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g17371
malus_domestica MD13G1172700.v1.1 MD16G1174200.v1.1
prunus_persica Prupe.1G140900_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0421301
rosa_laevigata RLG00000007699
rosa_multiflora Rmu_sc0004892.1_g000010 Rmu_sc0007721.1_g000001
rosa_roxburghii Rroxscaffold_5G00363530
rosa_rugosa Rorug04G0169200
rosa_samantha Rh4AG230600 Rh4BG233600 Rh4CG244800 Rh4DG229300
rosa_wichuraiana Rw4G020320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 356
AatII GACGTC 1 cut(s) 593
AccB7I CCANNNNNTGG 1 cut(s) 473
AccII CGCG 2 cut(s) 26, 54
AciI CCGC 4 cut(s) 26, 54, 120, 675
AcuI CTGAAG 2 cut(s) 384, 582
AcyI GRCGYC 1 cut(s) 590
AfaI GTAC 1 cut(s) 624
AfiI CCNNNNNNNGG 2 cut(s) 72, 473
AgsI TTSAA 3 cut(s) 18, 505, 686
AhlI ACTAGT 1 cut(s) 625
AjnI CCWGG 1 cut(s) 478
AluBI AGCT 3 cut(s) 22, 182, 578
AluI AGCT 3 cut(s) 22, 182, 578
Alw26I GTCTC 4 cut(s) 71, 578, 608, 737
ApeKI GCWGC 5 cut(s) 182, 185, 554, 557, 707
AseI ATTAAT 1 cut(s) 258
AspLEI GCGC 1 cut(s) 54
AspS9I GGNCC 1 cut(s) 476
AsuC2I CCSGG 2 cut(s) 73, 346
AsuHPI GGTGA 4 cut(s) 209, 259, 320, 363
AvaII GGWCC 1 cut(s) 476
BbsI GAAGAC 1 cut(s) 372
BbvCI CCTCAGC 1 cut(s) 711
BbvI GCAGC 5 cut(s) 169, 197, 541, 544, 694
BccI CCATC 1 cut(s) 413
BceAI ACGGC 1 cut(s) 177
BciT130I CCWGG 1 cut(s) 480
BcnI CCSGG 2 cut(s) 73, 346
BcoDI GTCTC 4 cut(s) 71, 578, 608, 737
BcuI ACTAGT 1 cut(s) 625
BfaI CTAG 3 cut(s) 575, 626, 699
BfmI CTRYAG 2 cut(s) 183, 654
BglII AGATCT 1 cut(s) 440
BisI GCNGC 6 cut(s) 55, 183, 186, 555, 558, 708
BlsI GCNGC 6 cut(s) 56, 184, 187, 556, 559, 709
BmcAI AGTACT 1 cut(s) 624
Bme1390I CCNGG 3 cut(s) 73, 346, 480
Bme18I GGWCC 1 cut(s) 476
BmgT120I GGNCC 1 cut(s) 476
BmrFI CCNGG 3 cut(s) 73, 346, 480
BpiI GAAGAC 1 cut(s) 372
BpmI CTGGAG 1 cut(s) 465
Bpu10I CCTNAGC 1 cut(s) 711
BpuMI CCSGG 2 cut(s) 73, 346
BsaHI GRCGYC 1 cut(s) 590
BsaI GGTCTC 1 cut(s) 71
BsaJI CCNNGG 4 cut(s) 72, 193, 374, 472
Bsc4I CCNNNNNNNGG 2 cut(s) 72, 473
BseBI CCWGG 1 cut(s) 480
BseDI CCNNGG 4 cut(s) 72, 193, 374, 472
BseGI GGATG 2 cut(s) 232, 517
BseLI CCNNNNNNNGG 2 cut(s) 72, 473
BseMII CTCAG 2 cut(s) 423, 702
BseRI GAGGAG 2 cut(s) 548, 647
BseXI GCAGC 5 cut(s) 169, 197, 541, 544, 694
Bsh1236I CGCG 2 cut(s) 26, 54
BsiSI CCGG 2 cut(s) 72, 345
BslI CCNNNNNNNGG 2 cut(s) 72, 473
BsmAI GTCTC 4 cut(s) 71, 578, 608, 737
BsmBI CGTCTC 2 cut(s) 578, 737
Bso31I GGTCTC 1 cut(s) 71
Bsp143I GATC 1 cut(s) 440
Bsp19I CCATGG 1 cut(s) 472
BspACI CCGC 4 cut(s) 26, 54, 120, 675
BspCNI CTCAG 2 cut(s) 424, 703
BspFNI CGCG 2 cut(s) 26, 54
BspMAI CTGCAG 2 cut(s) 187, 658
BspTNI GGTCTC 1 cut(s) 71
BssECI CCNNGG 4 cut(s) 72, 193, 374, 472
BssMI GATC 1 cut(s) 440
BssNI GRCGYC 1 cut(s) 590
BssT1I CCWWGG 2 cut(s) 374, 472
Bst2UI CCWGG 1 cut(s) 480
Bst4CI ACNGT 1 cut(s) 682
Bst6I CTCTTC 4 cut(s) 711, 723, 747, 752
BstACI GRCGYC 1 cut(s) 590
BstC8I GCNNGC 2 cut(s) 24, 190
BstDEI CTNAG 2 cut(s) 432, 711
BstDSI CCRYGG 2 cut(s) 193, 472
BstF5I GGATG 2 cut(s) 232, 517
BstFNI CGCG 2 cut(s) 26, 54
BstHHI GCGC 1 cut(s) 54
BstKTI GATC 1 cut(s) 443
BstMAI GTCTC 4 cut(s) 71, 578, 608, 737
BstMBI GATC 1 cut(s) 440
BstMWI GCNNNNNNNGC 1 cut(s) 138
BstNI CCWGG 1 cut(s) 480
BstSCI CCNGG 3 cut(s) 71, 344, 478
BstSFI CTRYAG 2 cut(s) 183, 654
BstUI CGCG 2 cut(s) 26, 54
BstV1I GCAGC 5 cut(s) 169, 197, 541, 544, 694
BstV2I GAAGAC 1 cut(s) 372
BstX2I RGATCY 1 cut(s) 440
BstXI CCANNNNNNTGG 1 cut(s) 479
BstYI RGATCY 1 cut(s) 440
BtgI CCRYGG 2 cut(s) 193, 472
BtsCI GGATG 2 cut(s) 232, 517
Cac8I GCNNGC 2 cut(s) 24, 190
CfoI GCGC 1 cut(s) 54
Cfr13I GGNCC 1 cut(s) 476
CseI GACGC 1 cut(s) 438
Csp6I GTAC 1 cut(s) 623
CviAII CATG 3 cut(s) 170, 338, 473
CviQI GTAC 1 cut(s) 623
DdeI CTNAG 2 cut(s) 432, 711
DpnI GATC 1 cut(s) 442
DpnII GATC 1 cut(s) 440
Eam1104I CTCTTC 4 cut(s) 711, 723, 747, 752
EarI CTCTTC 4 cut(s) 711, 723, 747, 752
Eco130I CCWWGG 2 cut(s) 374, 472
Eco31I GGTCTC 1 cut(s) 71
Eco47I GGWCC 1 cut(s) 476
Eco57I CTGAAG 2 cut(s) 384, 582
EcoRII CCWGG 1 cut(s) 478
EcoT14I CCWWGG 2 cut(s) 374, 472
ErhI CCWWGG 2 cut(s) 374, 472
Esp3I CGTCTC 2 cut(s) 578, 737
FaeI CATG 3 cut(s) 173, 341, 476
FaiI YATR 6 cut(s) 143, 171, 233, 339, 356, 474
FatI CATG 3 cut(s) 169, 337, 472
Fnu4HI GCNGC 6 cut(s) 55, 183, 186, 555, 558, 708
FokI GGATG 2 cut(s) 239, 524
Fsp4HI GCNGC 6 cut(s) 55, 183, 186, 555, 558, 708
FspBI CTAG 3 cut(s) 575, 626, 699
GlaI GCGC 1 cut(s) 53
GluI GCNGC 6 cut(s) 55, 183, 186, 555, 558, 708
GsuI CTGGAG 1 cut(s) 465
HapII CCGG 2 cut(s) 72, 345
HgaI GACGC 1 cut(s) 438
HhaI GCGC 1 cut(s) 54
Hin1I GRCGYC 1 cut(s) 590
Hin1II CATG 3 cut(s) 173, 341, 476
Hin6I GCGC 1 cut(s) 52
HinP1I GCGC 1 cut(s) 52
HinfI GANTC 2 cut(s) 14, 368
HpaII CCGG 2 cut(s) 72, 345
HphI GGTGA 4 cut(s) 209, 259, 320, 363
Hpy188I TCNGA 4 cut(s) 334, 364, 433, 454
Hpy188III TCNNGA 1 cut(s) 444
Hpy99I CGWCG 1 cut(s) 592
HpyAV CCTTC 2 cut(s) 244, 404
HpyCH4III ACNGT 1 cut(s) 682
HpyCH4IV ACGT 1 cut(s) 590
HpyCH4V TGCA 3 cut(s) 132, 185, 656
HpyF10VI GCNNNNNNNGC 1 cut(s) 138
HpyF3I CTNAG 2 cut(s) 432, 711
HpySE526I ACGT 1 cut(s) 590
Hsp92I GRCGYC 1 cut(s) 590
Hsp92II CATG 3 cut(s) 173, 341, 476
HspAI GCGC 1 cut(s) 52
Kzo9I GATC 1 cut(s) 440
LmnI GCTCC 2 cut(s) 334, 446
LpnPI CCDG 8 cut(s) 49, 62, 85, 358, 429, 465, 492, 717
Lsp1109I GCAGC 5 cut(s) 169, 197, 541, 544, 694
MaeI CTAG 3 cut(s) 575, 626, 699
MaeII ACGT 1 cut(s) 590
MaeIII GTNAC 1 cut(s) 308
MalI GATC 1 cut(s) 442
MboI GATC 1 cut(s) 440
MboII GAAGA 9 cut(s) 377, 450, 493, 575, 728, 733, 740, 745, 764
MflI RGATCY 1 cut(s) 440
MluCI AATT 3 cut(s) 398, 545, 638
MlyI GAGTC 1 cut(s) 362
MseI TTAA 3 cut(s) 210, 258, 763
MspI CCGG 2 cut(s) 72, 345
MspR9I CCNGG 3 cut(s) 73, 346, 480
MvaI CCWGG 1 cut(s) 480
MvnI CGCG 2 cut(s) 26, 54
MwoI GCNNNNNNNGC 1 cut(s) 138
NciI CCSGG 2 cut(s) 73, 346
NcoI CCATGG 1 cut(s) 472
NdeII GATC 1 cut(s) 440
NlaIII CATG 3 cut(s) 173, 341, 476
NmuCI GTSAC 1 cut(s) 308
PfeI GAWTC 1 cut(s) 14
PflFI GACNNNGTC 1 cut(s) 589
PflMI CCANNNNNTGG 1 cut(s) 473
PkrI GCNGC 6 cut(s) 56, 184, 187, 556, 559, 709
PleI GAGTC 1 cut(s) 362
PpsI GAGTC 1 cut(s) 362
PshBI ATTAAT 1 cut(s) 258
PsiI TTATAA 1 cut(s) 356
Psp6I CCWGG 1 cut(s) 478
PspGI CCWGG 1 cut(s) 478
PspPI GGNCC 1 cut(s) 476
PstI CTGCAG 2 cut(s) 187, 658
PsuI RGATCY 1 cut(s) 440
PsyI GACNNNGTC 1 cut(s) 589
RsaI GTAC 1 cut(s) 624
RsaNI GTAC 1 cut(s) 623
SaqAI TTAA 3 cut(s) 210, 258, 763
SatI GCNGC 6 cut(s) 55, 183, 186, 555, 558, 708
Sau3AI GATC 1 cut(s) 440
Sau96I GGNCC 1 cut(s) 476
ScaI AGTACT 1 cut(s) 624
SchI GAGTC 1 cut(s) 362
ScrFI CCNGG 3 cut(s) 73, 346, 480
SetI ASST 9 cut(s) 24, 184, 249, 310, 321, 481, 510, 580, 593
SfcI CTRYAG 2 cut(s) 183, 654
SinI GGWCC 1 cut(s) 476
SpeI ACTAGT 1 cut(s) 625
Sse9I AATT 3 cut(s) 398, 545, 638
SsiI CCGC 4 cut(s) 26, 54, 120, 675
SspMI CTAG 3 cut(s) 575, 626, 699
StyD4I CCNGG 3 cut(s) 71, 344, 478
StyI CCWWGG 2 cut(s) 374, 472
TaaI ACNGT 1 cut(s) 682
TaiI ACGT 1 cut(s) 593
TasI AATT 3 cut(s) 398, 545, 638
TatI WGTACW 1 cut(s) 622
TauI GCSGC 1 cut(s) 57
TfiI GAWTC 1 cut(s) 14
Tru1I TTAA 3 cut(s) 210, 258, 763
Tru9I TTAA 3 cut(s) 210, 258, 763
TseFI GTSAC 1 cut(s) 308
TseI GCWGC 5 cut(s) 182, 185, 554, 557, 707
Tsp45I GTSAC 1 cut(s) 308
TspDTI ATGAA 2 cut(s) 276, 354
Tth111I GACNNNGTC 1 cut(s) 589
Van91I CCANNNNNTGG 1 cut(s) 473
VpaK11BI GGWCC 1 cut(s) 476
VspI ATTAAT 1 cut(s) 258
XspI CTAG 3 cut(s) 575, 626, 699
ZraI GACGTC 1 cut(s) 591
ZrmI AGTACT 1 cut(s) 624
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.