Rh4BG233600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0016307
Physical Location & Seq
Forward (+)
39882195 .. 39883826
1632 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG233600.1

Sequence Viewer

Length: 795 bp
ATGGGCTGTGGGGATTCTAAGCTCGCCGTTGCCACCAGCAACGCCCTCCTGCGCGGCAAGAAATCCAATGCCGGGGAGACCACCAAGAACAGCAAAGACATCGAAACCAACCACAAAACCGCCACAGATTGCAACAACAGCATAGCAAACTCAACACAACAACAACAACAACAACAACAACAACAACATGAGCAAGAAGCTGCAGCAAGCCGTGGTGAAAAAGTTGTTAATAAGAACAATGTGGATGTTACGGTGGCTGATGAGGTGAAGGACATTAATGAAAACAAAAAGGAAAATGGAGATGACAGAGAAATAATAGACAAAGGTGACAACAAGGTTTTAGTGGTTTCGGAGCATGAAGCCGGGAGATTTATAACATCTGAAGACTCACCAAGGGATTTCTTTTCGTCAAGGAAATTAGATGAGGAAGGGATTGATGGGATTATTTCTGAGGGAAGATCTGGAGCGTCCGATTATTACACTCCACGCCATGGACCTGGAAGTAAGGGAAACTCGTTCTTCAAGGTGGATGAGGAAAGCAAAGTTGTAGAGGAGGACAAAGAATTGTTGCCTGCTGCTGAAGAAACAAAACTAGCTGTTGAGACGACGTCCTCAACAGAAAATAAAGGAGAGGCAGCAGTACTAGTGGAGGAGAAATTGATAAAGGAAACTGCAGAAGTGGAAATCAAAACCGCTACTGTTGAAGCCAAAGTTTCTAGCCCTGCTGCTGAGGAAGAGAAGAAAGAAGAGAAGAAAGAAGAGAAGAAAGTAGAGAAGAAAGAAGAGAAGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

264

Amino Acids

28.97

Weight (kDa)

4.88

Isoelectric Point (pI)

42.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016307)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g17371
malus_domestica MD13G1172700.v1.1 MD16G1174200.v1.1
prunus_persica Prupe.1G140900_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0421301
rosa_laevigata RLG00000007699
rosa_multiflora Rmu_sc0004892.1_g000010 Rmu_sc0007721.1_g000001
rosa_roxburghii Rroxscaffold_5G00363530
rosa_rugosa Rorug04G0169200
rosa_samantha Rh4AG230600 Rh4BG233600 Rh4CG244800 Rh4DG229300
rosa_wichuraiana Rw4G020320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 374
AatII GACGTC 1 cut(s) 611
AccB7I CCANNNNNTGG 1 cut(s) 491
AccII CGCG 1 cut(s) 54
AciI CCGC 3 cut(s) 54, 120, 693
AcuI CTGAAG 2 cut(s) 402, 600
AcyI GRCGYC 1 cut(s) 608
AfaI GTAC 1 cut(s) 642
AfiI CCNNNNNNNGG 2 cut(s) 72, 491
AgsI TTSAA 2 cut(s) 523, 704
AhlI ACTAGT 1 cut(s) 643
AjnI CCWGG 1 cut(s) 496
AluBI AGCT 3 cut(s) 22, 200, 596
AluI AGCT 3 cut(s) 22, 200, 596
Alw26I GTCTC 2 cut(s) 71, 596
ApeKI GCWGC 5 cut(s) 200, 203, 575, 635, 725
AseI ATTAAT 1 cut(s) 276
AspLEI GCGC 1 cut(s) 54
AspS9I GGNCC 1 cut(s) 494
AsuC2I CCSGG 2 cut(s) 73, 364
AsuHPI GGTGA 4 cut(s) 227, 277, 338, 381
AvaII GGWCC 1 cut(s) 494
BbsI GAAGAC 1 cut(s) 390
BbvCI CCTCAGC 1 cut(s) 729
BbvI GCAGC 5 cut(s) 187, 215, 562, 647, 712
BccI CCATC 1 cut(s) 431
BceAI ACGGC 2 cut(s) 11, 195
BcgI CGANNNNNNTGC 2 cut(s) 82, 116
BciT130I CCWGG 1 cut(s) 498
BcnI CCSGG 2 cut(s) 73, 364
BcoDI GTCTC 2 cut(s) 71, 596
BcuI ACTAGT 1 cut(s) 643
BfaI CTAG 3 cut(s) 593, 644, 717
BfmI CTRYAG 2 cut(s) 201, 672
BglII AGATCT 1 cut(s) 458
BisI GCNGC 6 cut(s) 55, 201, 204, 576, 636, 726
BlsI GCNGC 6 cut(s) 56, 202, 205, 577, 637, 727
BmcAI AGTACT 1 cut(s) 642
Bme1390I CCNGG 3 cut(s) 73, 364, 498
Bme18I GGWCC 1 cut(s) 494
BmgT120I GGNCC 1 cut(s) 494
BmrFI CCNGG 3 cut(s) 73, 364, 498
BpiI GAAGAC 1 cut(s) 390
BpmI CTGGAG 1 cut(s) 483
Bpu10I CCTNAGC 1 cut(s) 729
BpuMI CCSGG 2 cut(s) 73, 364
BsaHI GRCGYC 1 cut(s) 608
BsaI GGTCTC 1 cut(s) 71
BsaJI CCNNGG 4 cut(s) 72, 211, 392, 490
Bsc4I CCNNNNNNNGG 2 cut(s) 72, 491
BseBI CCWGG 1 cut(s) 498
BseDI CCNNGG 4 cut(s) 72, 211, 392, 490
BseGI GGATG 2 cut(s) 250, 535
BseLI CCNNNNNNNGG 2 cut(s) 72, 491
BseMII CTCAG 2 cut(s) 441, 720
BseRI GAGGAG 2 cut(s) 566, 665
BseXI GCAGC 5 cut(s) 187, 215, 562, 647, 712
Bsh1236I CGCG 1 cut(s) 54
BsiSI CCGG 2 cut(s) 72, 363
BslI CCNNNNNNNGG 2 cut(s) 72, 491
BsmAI GTCTC 2 cut(s) 71, 596
BsmBI CGTCTC 1 cut(s) 596
Bso31I GGTCTC 1 cut(s) 71
Bsp143I GATC 1 cut(s) 458
Bsp19I CCATGG 1 cut(s) 490
BspACI CCGC 3 cut(s) 54, 120, 693
BspCNI CTCAG 2 cut(s) 442, 721
BspFNI CGCG 1 cut(s) 54
BspMAI CTGCAG 2 cut(s) 205, 676
BspTNI GGTCTC 1 cut(s) 71
BssECI CCNNGG 4 cut(s) 72, 211, 392, 490
BssMI GATC 1 cut(s) 458
BssNI GRCGYC 1 cut(s) 608
BssT1I CCWWGG 2 cut(s) 392, 490
Bst2UI CCWGG 1 cut(s) 498
Bst4CI ACNGT 2 cut(s) 253, 700
Bst6I CTCTTC 5 cut(s) 729, 741, 753, 777, 782
BstACI GRCGYC 1 cut(s) 608
BstC8I GCNNGC 3 cut(s) 24, 208, 573
BstDEI CTNAG 3 cut(s) 18, 450, 729
BstDSI CCRYGG 2 cut(s) 211, 490
BstF5I GGATG 2 cut(s) 250, 535
BstFNI CGCG 1 cut(s) 54
BstHHI GCGC 1 cut(s) 54
BstKTI GATC 1 cut(s) 461
BstMAI GTCTC 2 cut(s) 71, 596
BstMBI GATC 1 cut(s) 458
BstMWI GCNNNNNNNGC 1 cut(s) 138
BstNI CCWGG 1 cut(s) 498
BstSCI CCNGG 3 cut(s) 71, 362, 496
BstSFI CTRYAG 2 cut(s) 201, 672
BstUI CGCG 1 cut(s) 54
BstV1I GCAGC 5 cut(s) 187, 215, 562, 647, 712
BstV2I GAAGAC 1 cut(s) 390
BstX2I RGATCY 1 cut(s) 458
BstXI CCANNNNNNTGG 1 cut(s) 497
BstYI RGATCY 1 cut(s) 458
BtgI CCRYGG 2 cut(s) 211, 490
BtsCI GGATG 2 cut(s) 250, 535
Cac8I GCNNGC 3 cut(s) 24, 208, 573
CfoI GCGC 1 cut(s) 54
Cfr13I GGNCC 1 cut(s) 494
CseI GACGC 1 cut(s) 456
Csp6I GTAC 1 cut(s) 641
CviAII CATG 3 cut(s) 188, 356, 491
CviJI RGCY 9 cut(s) 6, 22, 200, 210, 257, 362, 596, 707, 720
CviKI_1 RGCY 9 cut(s) 6, 22, 200, 210, 257, 362, 596, 707, 720
CviQI GTAC 1 cut(s) 641
DdeI CTNAG 3 cut(s) 18, 450, 729
DpnI GATC 1 cut(s) 460
DpnII GATC 1 cut(s) 458
Eam1104I CTCTTC 5 cut(s) 729, 741, 753, 777, 782
EarI CTCTTC 5 cut(s) 729, 741, 753, 777, 782
Eco130I CCWWGG 2 cut(s) 392, 490
Eco31I GGTCTC 1 cut(s) 71
Eco47I GGWCC 1 cut(s) 494
Eco57I CTGAAG 2 cut(s) 402, 600
EcoRII CCWGG 1 cut(s) 496
EcoT14I CCWWGG 2 cut(s) 392, 490
ErhI CCWWGG 2 cut(s) 392, 490
Esp3I CGTCTC 1 cut(s) 596
FaeI CATG 3 cut(s) 191, 359, 494
FaiI YATR 5 cut(s) 143, 189, 357, 374, 492
FatI CATG 3 cut(s) 187, 355, 490
Fnu4HI GCNGC 6 cut(s) 55, 201, 204, 576, 636, 726
FokI GGATG 2 cut(s) 257, 542
Fsp4HI GCNGC 6 cut(s) 55, 201, 204, 576, 636, 726
FspBI CTAG 3 cut(s) 593, 644, 717
GlaI GCGC 1 cut(s) 53
GluI GCNGC 6 cut(s) 55, 201, 204, 576, 636, 726
GsuI CTGGAG 1 cut(s) 483
HapII CCGG 2 cut(s) 72, 363
HgaI GACGC 1 cut(s) 456
HhaI GCGC 1 cut(s) 54
Hin1I GRCGYC 1 cut(s) 608
Hin1II CATG 3 cut(s) 191, 359, 494
Hin6I GCGC 1 cut(s) 52
HinP1I GCGC 1 cut(s) 52
HinfI GANTC 2 cut(s) 14, 386
HpaII CCGG 2 cut(s) 72, 363
HphI GGTGA 4 cut(s) 227, 277, 338, 381
Hpy188I TCNGA 4 cut(s) 352, 382, 451, 472
Hpy188III TCNNGA 1 cut(s) 462
Hpy99I CGWCG 1 cut(s) 610
HpyAV CCTTC 2 cut(s) 262, 422
HpyCH4III ACNGT 2 cut(s) 253, 700
HpyCH4IV ACGT 1 cut(s) 608
HpyCH4V TGCA 3 cut(s) 132, 203, 674
HpyF10VI GCNNNNNNNGC 1 cut(s) 138
HpyF3I CTNAG 3 cut(s) 18, 450, 729
HpySE526I ACGT 1 cut(s) 608
Hsp92I GRCGYC 1 cut(s) 608
Hsp92II CATG 3 cut(s) 191, 359, 494
HspAI GCGC 1 cut(s) 52
Kzo9I GATC 1 cut(s) 458
LmnI GCTCC 2 cut(s) 352, 464
LpnPI CCDG 9 cut(s) 49, 62, 85, 376, 447, 483, 510, 585, 735
Lsp1109I GCAGC 5 cut(s) 187, 215, 562, 647, 712
MaeI CTAG 3 cut(s) 593, 644, 717
MaeII ACGT 1 cut(s) 608
MaeIII GTNAC 2 cut(s) 247, 326
MalI GATC 1 cut(s) 460
MboI GATC 1 cut(s) 458
MflI RGATCY 1 cut(s) 458
MluCI AATT 3 cut(s) 416, 563, 656
MlyI GAGTC 1 cut(s) 380
MseI TTAA 3 cut(s) 228, 276, 793
MspI CCGG 2 cut(s) 72, 363
MspR9I CCNGG 3 cut(s) 73, 364, 498
MvaI CCWGG 1 cut(s) 498
MvnI CGCG 1 cut(s) 54
MwoI GCNNNNNNNGC 1 cut(s) 138
NciI CCSGG 2 cut(s) 73, 364
NcoI CCATGG 1 cut(s) 490
NdeII GATC 1 cut(s) 458
NlaIII CATG 3 cut(s) 191, 359, 494
NmuCI GTSAC 1 cut(s) 326
PfeI GAWTC 1 cut(s) 14
PflFI GACNNNGTC 1 cut(s) 607
PflMI CCANNNNNTGG 1 cut(s) 491
PkrI GCNGC 6 cut(s) 56, 202, 205, 577, 637, 727
PleI GAGTC 1 cut(s) 380
PpsI GAGTC 1 cut(s) 380
PshBI ATTAAT 1 cut(s) 276
PsiI TTATAA 1 cut(s) 374
Psp6I CCWGG 1 cut(s) 496
PspGI CCWGG 1 cut(s) 496
PspPI GGNCC 1 cut(s) 494
PstI CTGCAG 2 cut(s) 205, 676
PsuI RGATCY 1 cut(s) 458
PsyI GACNNNGTC 1 cut(s) 607
RsaI GTAC 1 cut(s) 642
RsaNI GTAC 1 cut(s) 641
SaqAI TTAA 3 cut(s) 228, 276, 793
SatI GCNGC 6 cut(s) 55, 201, 204, 576, 636, 726
Sau3AI GATC 1 cut(s) 458
Sau96I GGNCC 1 cut(s) 494
ScaI AGTACT 1 cut(s) 642
SchI GAGTC 1 cut(s) 380
ScrFI CCNGG 3 cut(s) 73, 364, 498
SetI ASST 9 cut(s) 24, 202, 267, 328, 339, 499, 528, 598, 611
SfcI CTRYAG 2 cut(s) 201, 672
SinI GGWCC 1 cut(s) 494
SpeI ACTAGT 1 cut(s) 643
Sse9I AATT 3 cut(s) 416, 563, 656
SsiI CCGC 3 cut(s) 54, 120, 693
SspMI CTAG 3 cut(s) 593, 644, 717
StyD4I CCNGG 3 cut(s) 71, 362, 496
StyI CCWWGG 2 cut(s) 392, 490
TaaI ACNGT 2 cut(s) 253, 700
TaiI ACGT 1 cut(s) 611
TaqI TCGA 1 cut(s) 102
TasI AATT 3 cut(s) 416, 563, 656
TatI WGTACW 1 cut(s) 640
TauI GCSGC 1 cut(s) 57
TfiI GAWTC 1 cut(s) 14
Tru1I TTAA 3 cut(s) 228, 276, 793
Tru9I TTAA 3 cut(s) 228, 276, 793
TseFI GTSAC 1 cut(s) 326
TseI GCWGC 5 cut(s) 200, 203, 575, 635, 725
Tsp45I GTSAC 1 cut(s) 326
TspDTI ATGAA 2 cut(s) 294, 372
Tth111I GACNNNGTC 1 cut(s) 607
Van91I CCANNNNNTGG 1 cut(s) 491
VpaK11BI GGWCC 1 cut(s) 494
VspI ATTAAT 1 cut(s) 276
XspI CTAG 3 cut(s) 593, 644, 717
ZraI GACGTC 1 cut(s) 609
ZrmI AGTACT 1 cut(s) 642
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.