RchiOBHm_Chr4g0421301

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0016307
Physical Location & Seq
Forward (+)
46933135 .. 46934497
1363 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39096

Sequence Viewer

Length: 771 bp
ATGGGCTGTGGGGATTCAAAGCTCGCCGTTGCCACCAGCAACGCCCTCCTGCGCGGCAAGAAATCCAATGCCGGGGAGACCACCAAGAACAGCAAAGACATCGAAACCAACCACAAAACCGCCACAGATTGCAACAACAGCATAGCAAACTCAACGCAACAACAACAACAACAACATGAGCAAGAAGCTGCAGCAAGCCGTGGTGAAAAAGTTGTTAATAAGAACAATGTGGATGTTATGGTGGCTGATGAGGTGAAGGACATTAATGAAAACAAAAAGGAAAATGGAGATGACAAAGAAATAATAGACAAAGGTGACAACAAGGTTTTAGTGGTTTCGGAGCATGAAGCCGGGAGATTTATAACATCTGAAGACTCACCAAGGGATTTCTTTTCGTCAAGGAAATTAGATGAGGAAGGGATTGATGGGATTATTTCTGAGGGAAGATCTGGAGCGTCCGATTATTACACTCCACGCCATGGACCTGGAAGTAAGGGAAACTCGTTCTTCAAGGTGGATGAGGAAAGCAAAGTTGTAGAGGAGGACAAAGAATTGTTGCCTGCTGCTGAAGAAACAAAACTAGCTGTTGAGACGACGTCCTCAACAGAAAATAAAGGGGAGCCAGCAGTACTAGTGGAGGAGAAATTGATAAAGGAAACTGCAGAAGTGGAAATCAAAACCGCTACTGTTGAAGCCAAAGTTTCTAGCCCTGCTGCTGAGGAAGAGAAGAAAGAAGAGAAGAAAGTAGAGAAGAAAGAAGAGAAGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

256

Amino Acids

27.97

Weight (kDa)

4.86

Isoelectric Point (pI)

41.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016307)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g17371
malus_domestica MD13G1172700.v1.1 MD16G1174200.v1.1
prunus_persica Prupe.1G140900_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0421301
rosa_laevigata RLG00000007699
rosa_multiflora Rmu_sc0004892.1_g000010 Rmu_sc0007721.1_g000001
rosa_roxburghii Rroxscaffold_5G00363530
rosa_rugosa Rorug04G0169200
rosa_samantha Rh4AG230600 Rh4BG233600 Rh4CG244800 Rh4DG229300
rosa_wichuraiana Rw4G020320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 362
AatII GACGTC 1 cut(s) 599
AccB7I CCANNNNNTGG 1 cut(s) 479
AccII CGCG 1 cut(s) 54
AciI CCGC 3 cut(s) 54, 120, 681
AcuI CTGAAG 2 cut(s) 390, 588
AcyI GRCGYC 1 cut(s) 596
AfaI GTAC 1 cut(s) 630
AfiI CCNNNNNNNGG 2 cut(s) 72, 479
AgsI TTSAA 3 cut(s) 18, 511, 692
AhlI ACTAGT 1 cut(s) 631
AjnI CCWGG 1 cut(s) 484
AluBI AGCT 3 cut(s) 22, 188, 584
AluI AGCT 3 cut(s) 22, 188, 584
Alw26I GTCTC 2 cut(s) 71, 584
ApeKI GCWGC 4 cut(s) 188, 191, 563, 713
AseI ATTAAT 1 cut(s) 264
AspLEI GCGC 1 cut(s) 54
AspS9I GGNCC 1 cut(s) 482
AsuC2I CCSGG 2 cut(s) 73, 352
AsuHPI GGTGA 4 cut(s) 215, 265, 326, 369
AvaII GGWCC 1 cut(s) 482
BbsI GAAGAC 1 cut(s) 378
BbvCI CCTCAGC 1 cut(s) 717
BbvI GCAGC 4 cut(s) 175, 203, 550, 700
BccI CCATC 1 cut(s) 419
BceAI ACGGC 2 cut(s) 11, 183
BcgI CGANNNNNNTGC 2 cut(s) 82, 116
BciT130I CCWGG 1 cut(s) 486
BcnI CCSGG 2 cut(s) 73, 352
BcoDI GTCTC 2 cut(s) 71, 584
BcuI ACTAGT 1 cut(s) 631
BfaI CTAG 3 cut(s) 581, 632, 705
BfmI CTRYAG 2 cut(s) 189, 660
BglII AGATCT 1 cut(s) 446
BisI GCNGC 5 cut(s) 55, 189, 192, 564, 714
BlsI GCNGC 5 cut(s) 56, 190, 193, 565, 715
BmcAI AGTACT 1 cut(s) 630
Bme1390I CCNGG 3 cut(s) 73, 352, 486
Bme18I GGWCC 1 cut(s) 482
BmgT120I GGNCC 1 cut(s) 482
BmiI GGNNCC 1 cut(s) 621
BmrFI CCNGG 3 cut(s) 73, 352, 486
BpiI GAAGAC 1 cut(s) 378
BpmI CTGGAG 1 cut(s) 471
Bpu10I CCTNAGC 1 cut(s) 717
BpuMI CCSGG 2 cut(s) 73, 352
BsaHI GRCGYC 1 cut(s) 596
BsaI GGTCTC 1 cut(s) 71
BsaJI CCNNGG 4 cut(s) 72, 199, 380, 478
Bsc4I CCNNNNNNNGG 2 cut(s) 72, 479
BseBI CCWGG 1 cut(s) 486
BseDI CCNNGG 4 cut(s) 72, 199, 380, 478
BseGI GGATG 2 cut(s) 238, 523
BseLI CCNNNNNNNGG 2 cut(s) 72, 479
BseMII CTCAG 2 cut(s) 429, 708
BseRI GAGGAG 2 cut(s) 554, 653
BseXI GCAGC 4 cut(s) 175, 203, 550, 700
Bsh1236I CGCG 1 cut(s) 54
BsiSI CCGG 2 cut(s) 72, 351
BslI CCNNNNNNNGG 2 cut(s) 72, 479
BsmAI GTCTC 2 cut(s) 71, 584
BsmBI CGTCTC 1 cut(s) 584
Bso31I GGTCTC 1 cut(s) 71
Bsp143I GATC 1 cut(s) 446
Bsp19I CCATGG 1 cut(s) 478
BspACI CCGC 3 cut(s) 54, 120, 681
BspCNI CTCAG 2 cut(s) 430, 709
BspFNI CGCG 1 cut(s) 54
BspLI GGNNCC 1 cut(s) 621
BspMAI CTGCAG 2 cut(s) 193, 664
BspTNI GGTCTC 1 cut(s) 71
BssECI CCNNGG 4 cut(s) 72, 199, 380, 478
BssMI GATC 1 cut(s) 446
BssNI GRCGYC 1 cut(s) 596
BssT1I CCWWGG 2 cut(s) 380, 478
Bst2UI CCWGG 1 cut(s) 486
Bst4CI ACNGT 1 cut(s) 688
Bst6I CTCTTC 4 cut(s) 717, 729, 753, 758
BstACI GRCGYC 1 cut(s) 596
BstC8I GCNNGC 4 cut(s) 24, 196, 561, 624
BstDEI CTNAG 2 cut(s) 438, 717
BstDSI CCRYGG 2 cut(s) 199, 478
BstF5I GGATG 2 cut(s) 238, 523
BstFNI CGCG 1 cut(s) 54
BstHHI GCGC 1 cut(s) 54
BstKTI GATC 1 cut(s) 449
BstMAI GTCTC 2 cut(s) 71, 584
BstMBI GATC 1 cut(s) 446
BstMWI GCNNNNNNNGC 1 cut(s) 138
BstNI CCWGG 1 cut(s) 486
BstSCI CCNGG 3 cut(s) 71, 350, 484
BstSFI CTRYAG 2 cut(s) 189, 660
BstUI CGCG 1 cut(s) 54
BstV1I GCAGC 4 cut(s) 175, 203, 550, 700
BstV2I GAAGAC 1 cut(s) 378
BstX2I RGATCY 1 cut(s) 446
BstXI CCANNNNNNTGG 1 cut(s) 485
BstYI RGATCY 1 cut(s) 446
BtgI CCRYGG 2 cut(s) 199, 478
BtsCI GGATG 2 cut(s) 238, 523
Cac8I GCNNGC 4 cut(s) 24, 196, 561, 624
CfoI GCGC 1 cut(s) 54
Cfr13I GGNCC 1 cut(s) 482
CseI GACGC 1 cut(s) 444
Csp6I GTAC 1 cut(s) 629
CviAII CATG 3 cut(s) 176, 344, 479
CviQI GTAC 1 cut(s) 629
DdeI CTNAG 2 cut(s) 438, 717
DpnI GATC 1 cut(s) 448
DpnII GATC 1 cut(s) 446
Eam1104I CTCTTC 4 cut(s) 717, 729, 753, 758
EarI CTCTTC 4 cut(s) 717, 729, 753, 758
Eco130I CCWWGG 2 cut(s) 380, 478
Eco31I GGTCTC 1 cut(s) 71
Eco47I GGWCC 1 cut(s) 482
Eco57I CTGAAG 2 cut(s) 390, 588
EcoRII CCWGG 1 cut(s) 484
EcoT14I CCWWGG 2 cut(s) 380, 478
ErhI CCWWGG 2 cut(s) 380, 478
Esp3I CGTCTC 1 cut(s) 584
FaeI CATG 3 cut(s) 179, 347, 482
FaiI YATR 6 cut(s) 143, 177, 239, 345, 362, 480
FatI CATG 3 cut(s) 175, 343, 478
Fnu4HI GCNGC 5 cut(s) 55, 189, 192, 564, 714
FokI GGATG 2 cut(s) 245, 530
Fsp4HI GCNGC 5 cut(s) 55, 189, 192, 564, 714
FspBI CTAG 3 cut(s) 581, 632, 705
GlaI GCGC 1 cut(s) 53
GluI GCNGC 5 cut(s) 55, 189, 192, 564, 714
GsuI CTGGAG 1 cut(s) 471
HapII CCGG 2 cut(s) 72, 351
HgaI GACGC 1 cut(s) 444
HhaI GCGC 1 cut(s) 54
Hin1I GRCGYC 1 cut(s) 596
Hin1II CATG 3 cut(s) 179, 347, 482
Hin6I GCGC 1 cut(s) 52
HinP1I GCGC 1 cut(s) 52
HinfI GANTC 2 cut(s) 14, 374
HpaII CCGG 2 cut(s) 72, 351
HphI GGTGA 4 cut(s) 215, 265, 326, 369
Hpy188I TCNGA 4 cut(s) 340, 370, 439, 460
Hpy188III TCNNGA 1 cut(s) 450
Hpy99I CGWCG 1 cut(s) 598
HpyAV CCTTC 2 cut(s) 250, 410
HpyCH4III ACNGT 1 cut(s) 688
HpyCH4IV ACGT 1 cut(s) 596
HpyCH4V TGCA 3 cut(s) 132, 191, 662
HpyF10VI GCNNNNNNNGC 1 cut(s) 138
HpyF3I CTNAG 2 cut(s) 438, 717
HpySE526I ACGT 1 cut(s) 596
Hsp92I GRCGYC 1 cut(s) 596
Hsp92II CATG 3 cut(s) 179, 347, 482
HspAI GCGC 1 cut(s) 52
Kzo9I GATC 1 cut(s) 446
LmnI GCTCC 3 cut(s) 340, 452, 619
Lsp1109I GCAGC 4 cut(s) 175, 203, 550, 700
MaeI CTAG 3 cut(s) 581, 632, 705
MaeII ACGT 1 cut(s) 596
MaeIII GTNAC 1 cut(s) 314
MalI GATC 1 cut(s) 448
MboI GATC 1 cut(s) 446
MflI RGATCY 1 cut(s) 446
MluCI AATT 3 cut(s) 404, 551, 644
MlyI GAGTC 1 cut(s) 368
MseI TTAA 3 cut(s) 216, 264, 769
MspI CCGG 2 cut(s) 72, 351
MspR9I CCNGG 3 cut(s) 73, 352, 486
MvaI CCWGG 1 cut(s) 486
MvnI CGCG 1 cut(s) 54
MwoI GCNNNNNNNGC 1 cut(s) 138
NciI CCSGG 2 cut(s) 73, 352
NcoI CCATGG 1 cut(s) 478
NdeII GATC 1 cut(s) 446
NlaIII CATG 3 cut(s) 179, 347, 482
NlaIV GGNNCC 1 cut(s) 621
NmuCI GTSAC 1 cut(s) 314
PfeI GAWTC 1 cut(s) 14
PflFI GACNNNGTC 1 cut(s) 595
PflMI CCANNNNNTGG 1 cut(s) 479
PkrI GCNGC 5 cut(s) 56, 190, 193, 565, 715
PleI GAGTC 1 cut(s) 368
PpsI GAGTC 1 cut(s) 368
PshBI ATTAAT 1 cut(s) 264
PsiI TTATAA 1 cut(s) 362
Psp6I CCWGG 1 cut(s) 484
PspGI CCWGG 1 cut(s) 484
PspN4I GGNNCC 1 cut(s) 621
PspPI GGNCC 1 cut(s) 482
PstI CTGCAG 2 cut(s) 193, 664
PsuI RGATCY 1 cut(s) 446
PsyI GACNNNGTC 1 cut(s) 595
RsaI GTAC 1 cut(s) 630
RsaNI GTAC 1 cut(s) 629
SaqAI TTAA 3 cut(s) 216, 264, 769
SatI GCNGC 5 cut(s) 55, 189, 192, 564, 714
Sau3AI GATC 1 cut(s) 446
Sau96I GGNCC 1 cut(s) 482
ScaI AGTACT 1 cut(s) 630
SchI GAGTC 1 cut(s) 368
ScrFI CCNGG 3 cut(s) 73, 352, 486
SetI ASST 9 cut(s) 24, 190, 255, 316, 327, 487, 516, 586, 599
SfcI CTRYAG 2 cut(s) 189, 660
SinI GGWCC 1 cut(s) 482
SpeI ACTAGT 1 cut(s) 631
Sse9I AATT 3 cut(s) 404, 551, 644
SsiI CCGC 3 cut(s) 54, 120, 681
SspMI CTAG 3 cut(s) 581, 632, 705
StyD4I CCNGG 3 cut(s) 71, 350, 484
StyI CCWWGG 2 cut(s) 380, 478
TaaI ACNGT 1 cut(s) 688
TaiI ACGT 1 cut(s) 599
TaqI TCGA 1 cut(s) 102
TasI AATT 3 cut(s) 404, 551, 644
TatI WGTACW 1 cut(s) 628
TauI GCSGC 1 cut(s) 57
TfiI GAWTC 1 cut(s) 14
Tru1I TTAA 3 cut(s) 216, 264, 769
Tru9I TTAA 3 cut(s) 216, 264, 769
TseFI GTSAC 1 cut(s) 314
TseI GCWGC 4 cut(s) 188, 191, 563, 713
Tsp45I GTSAC 1 cut(s) 314
TspDTI ATGAA 2 cut(s) 282, 360
Tth111I GACNNNGTC 1 cut(s) 595
Van91I CCANNNNNTGG 1 cut(s) 479
VpaK11BI GGWCC 1 cut(s) 482
VspI ATTAAT 1 cut(s) 264
XspI CTAG 3 cut(s) 581, 632, 705
ZraI GACGTC 1 cut(s) 597
ZrmI AGTACT 1 cut(s) 630
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.