Protein ALWAYS EARLY
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G21430 AT3G21430 AT3G21430 |
| fragaria_vesca | FvH4_4g17660 FvH4_4g17660 FvH4_4g17660 FvH4_4g17660 |
| malus_domestica | MD16G1172500.v1.1 MD16G1172600.v1.1 |
| prunus_persica | Prupe.1G139300_v2.0.a1 Prupe.1G139300_v2.0.a1 Prupe.1G139300_v2.0.a1 Prupe.1G139300_v2.0.a1 Prupe.1G139300_v2.0.a1 Prupe.1G139300_v2.0.a1 Prupe.1G139300_v2.0.a1 Prupe.1G139300_v2.0.a1 Prupe.1G139300_v2.0.a1 |
| pyrus_communis | pycom16g14470 |
| rosa_chinensis | RchiOBHm_Chr4g0421601 |
| rosa_laevigata | RLG00000007665 RLG00000008391 |
| rosa_multiflora | Rmu_ssc0000097.1_g000002 |
| rosa_roxburghii | Rroxscaffold_5G00363850 |
| rosa_rugosa | Rorug04G0173300 Rorug04G0173400 Rorug04G0173500 Rorug04G0173600 Rorug04G0173700 |
| rosa_samantha | Rh4AG233400 Rh4BG236300 Rh4CG248000 Rh4DG232200 |
| rosa_wichuraiana | Rw4G020070 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 48, 1446, 1841 |
| Acc36I | ACCTGC | 1 cut(s) | 2179 |
| AccBSI | CCGCTC | 1 cut(s) | 2909 |
| AccI | GTMKAC | 1 cut(s) | 3150 |
| AciI | CCGC | 2 cut(s) | 873, 2907 |
| AclWI | GGATC | 4 cut(s) | 2038, 2902, 2937, 2954 |
| AcoI | YGGCCR | 2 cut(s) | 621, 2680 |
| AcsI | RAATTY | 3 cut(s) | 1240, 1528, 2826 |
| AcuI | CTGAAG | 5 cut(s) | 168, 176, 1179, 1230, 2283 |
| AcyI | GRCGYC | 1 cut(s) | 435 |
| AflIII | ACRYGT | 3 cut(s) | 2011, 2472, 3053 |
| AhlI | ACTAGT | 1 cut(s) | 3113 |
| AjiI | CACGTC | 1 cut(s) | 2473 |
| AjnI | CCWGG | 6 cut(s) | 623, 731, 821, 1566, 2030, 3089 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2905, 2937 |
| Alw21I | GWGCWC | 3 cut(s) | 1643, 2229, 2401 |
| Alw26I | GTCTC | 6 cut(s) | 186, 1581, 1635, 1852, 2487, 2599 |
| AlwI | GGATC | 4 cut(s) | 2038, 2902, 2937, 2954 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 3196 |
| Ama87I | CYCGRG | 2 cut(s) | 567, 1853 |
| AoxI | GGCC | 9 cut(s) | 3, 131, 267, 539, 621, 824, 1569, 1991, 2680 |
| ApeKI | GCWGC | 5 cut(s) | 501, 800, 1184, 2543, 3032 |
| ApoI | RAATTY | 3 cut(s) | 1240, 1528, 2826 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1097, 1129, 2642, 2674 |
| AseI | ATTAAT | 1 cut(s) | 2235 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 161, 1675, 1971, 2769 |
| AspLEI | GCGC | 3 cut(s) | 528, 2460, 3202 |
| AspS9I | GGNCC | 5 cut(s) | 4, 131, 141, 267, 825 |
| AsuC2I | CCSGG | 1 cut(s) | 575 |
| AsuHPI | GGTGA | 7 cut(s) | 215, 609, 762, 1420, 1486, 2018, 3066 |
| AvaI | CYCGRG | 2 cut(s) | 567, 1853 |
| AvaII | GGWCC | 1 cut(s) | 141 |
| AxyI | CCTNAGG | 1 cut(s) | 285 |
| BaeGI | GKGCMC | 2 cut(s) | 293, 2422 |
| BalI | TGGCCA | 1 cut(s) | 2682 |
| BanII | GRGCYC | 2 cut(s) | 2229, 2401 |
| BarI | GAAGNNNNNNTAC | 6 cut(s) | 149, 181, 1420, 1452, 2376, 2408 |
| BauI | CACGAG | 1 cut(s) | 1821 |
| BbsI | GAAGAC | 6 cut(s) | 960, 1110, 1428, 1678, 2264, 3000 |
| Bbv12I | GWGCWC | 3 cut(s) | 1643, 2229, 2401 |
| BbvI | GCAGC | 5 cut(s) | 488, 812, 1171, 2530, 3044 |
| BccI | CCATC | 4 cut(s) | 491, 644, 775, 1704 |
| BceAI | ACGGC | 4 cut(s) | 2131, 2423, 2531, 3092 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 3160, 3194 |
| BciT130I | CCWGG | 6 cut(s) | 625, 733, 823, 1568, 2032, 3091 |
| BclI | TGATCA | 2 cut(s) | 1876, 2575 |
| BcnI | CCSGG | 1 cut(s) | 575 |
| BcoDI | GTCTC | 6 cut(s) | 186, 1581, 1635, 1852, 2487, 2599 |
| BcuI | ACTAGT | 1 cut(s) | 3113 |
| BfaI | CTAG | 5 cut(s) | 393, 1022, 1029, 2037, 3114 |
| BfmI | CTRYAG | 6 cut(s) | 213, 1398, 1482, 1503, 1545, 1634 |
| BfoI | RGCGCY | 1 cut(s) | 3203 |
| BfuAI | ACCTGC | 1 cut(s) | 2179 |
| BglII | AGATCT | 1 cut(s) | 1138 |
| BisI | GCNGC | 7 cut(s) | 502, 801, 874, 1185, 2544, 2907, 3033 |
| BlpI | GCTNAGC | 1 cut(s) | 2561 |
| BlsI | GCNGC | 7 cut(s) | 503, 802, 875, 1186, 2545, 2908, 3034 |
| BmcAI | AGTACT | 3 cut(s) | 763, 1006, 1781 |
| Bme1390I | CCNGG | 7 cut(s) | 575, 625, 733, 823, 1568, 2032, 3091 |
| Bme18I | GGWCC | 1 cut(s) | 141 |
| BmeT110I | CYCGRG | 2 cut(s) | 567, 1853 |
| BmgBI | CACGTC | 1 cut(s) | 2473 |
| BmgT120I | GGNCC | 5 cut(s) | 4, 131, 141, 267, 825 |
| BmiI | GGNNCC | 3 cut(s) | 6, 388, 827 |
| BmrFI | CCNGG | 7 cut(s) | 575, 625, 733, 823, 1568, 2032, 3091 |
| BmsI | GCATC | 8 cut(s) | 370, 500, 1108, 1143, 1612, 2361, 2425, 2863 |
| BpiI | GAAGAC | 6 cut(s) | 960, 1110, 1428, 1678, 2264, 3000 |
| BpmI | CTGGAG | 1 cut(s) | 2659 |
| Bpu10I | CCTNAGC | 3 cut(s) | 672, 868, 2379 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2561 |
| BpuEI | CTTGAG | 4 cut(s) | 1168, 1603, 2213, 2623 |
| BpuMI | CCSGG | 1 cut(s) | 575 |
| BsaAI | YACGTR | 1 cut(s) | 2082 |
| BsaHI | GRCGYC | 1 cut(s) | 435 |
| BsaI | GGTCTC | 1 cut(s) | 1852 |
| BsaJI | CCNNGG | 9 cut(s) | 829, 1254, 1370, 1751, 1852, 1862, 2030, 2439, 3090 |
| BsaWI | WCCGGW | 1 cut(s) | 1917 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1699, 1729 |
| Bse118I | RCCGGY | 3 cut(s) | 619, 2713, 3076 |
| Bse1I | ACTGG | 9 cut(s) | 8, 200, 535, 642, 1325, 2293, 2676, 3146, 3201 |
| Bse21I | CCTNAGG | 1 cut(s) | 285 |
| Bse3DI | GCAATG | 2 cut(s) | 324, 1212 |
| BseBI | CCWGG | 6 cut(s) | 625, 733, 823, 1568, 2032, 3091 |
| BseDI | CCNNGG | 9 cut(s) | 829, 1254, 1370, 1751, 1852, 1862, 2030, 2439, 3090 |
| BseGI | GGATG | 6 cut(s) | 798, 850, 1158, 2440, 2795, 2875 |
| BseMI | GCAATG | 2 cut(s) | 324, 1212 |
| BseNI | ACTGG | 9 cut(s) | 8, 200, 535, 642, 1325, 2293, 2676, 3146, 3201 |
| BseRI | GAGGAG | 2 cut(s) | 555, 2328 |
| BseSI | GKGCMC | 2 cut(s) | 293, 2422 |
| BseXI | GCAGC | 5 cut(s) | 488, 812, 1171, 2530, 3044 |
| BsgI | GTGCAG | 1 cut(s) | 1170 |
| BshFI | GGCC | 9 cut(s) | 5, 133, 269, 541, 623, 826, 1571, 1993, 2682 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1643, 2229, 2401 |
| BsiHKCI | CYCGRG | 2 cut(s) | 567, 1853 |
| BsiSI | CCGG | 6 cut(s) | 575, 620, 1918, 2661, 2714, 3077 |
| BslFI | GGGAC | 2 cut(s) | 463, 557 |
| BsmAI | GTCTC | 6 cut(s) | 186, 1581, 1635, 1852, 2487, 2599 |
| BsmBI | CGTCTC | 1 cut(s) | 2487 |
| BsmFI | GGGAC | 2 cut(s) | 463, 557 |
| BsnI | GGCC | 9 cut(s) | 5, 133, 269, 541, 623, 826, 1571, 1993, 2682 |
| Bso31I | GGTCTC | 1 cut(s) | 1852 |
| BsoBI | CYCGRG | 2 cut(s) | 567, 1853 |
| Bsp1286I | GDGCHC | 5 cut(s) | 293, 1643, 2229, 2401, 2422 |
| Bsp1407I | TGTACA | 2 cut(s) | 2945, 3056 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2561 |
| Bsp19I | CCATGG | 3 cut(s) | 829, 1254, 1751 |
| BspACI | CCGC | 2 cut(s) | 873, 2907 |
| BspANI | GGCC | 9 cut(s) | 5, 133, 269, 541, 623, 826, 1571, 1993, 2682 |
| BspHI | TCATGA | 1 cut(s) | 3042 |
| BspLI | GGNNCC | 3 cut(s) | 6, 388, 827 |
| BspMAI | CTGCAG | 1 cut(s) | 1638 |
| BspMI | ACCTGC | 1 cut(s) | 2179 |
| BspPI | GGATC | 4 cut(s) | 2038, 2902, 2937, 2954 |
| BspQI | GCTCTTC | 2 cut(s) | 144, 2598 |
| BspTNI | GGTCTC | 1 cut(s) | 1852 |
| BsrBI | CCGCTC | 1 cut(s) | 2909 |
| BsrDI | GCAATG | 2 cut(s) | 324, 1212 |
| BsrFI | RCCGGY | 3 cut(s) | 619, 2713, 3076 |
| BsrGI | TGTACA | 2 cut(s) | 2945, 3056 |
| BsrI | ACTGG | 9 cut(s) | 8, 200, 535, 642, 1325, 2293, 2676, 3146, 3201 |
| BssAI | RCCGGY | 3 cut(s) | 619, 2713, 3076 |
| BssECI | CCNNGG | 9 cut(s) | 829, 1254, 1370, 1751, 1852, 1862, 2030, 2439, 3090 |
| BssNI | GRCGYC | 1 cut(s) | 435 |
| BssSI | CACGAG | 1 cut(s) | 1821 |
| BssT1I | CCWWGG | 4 cut(s) | 829, 1254, 1370, 1751 |
| Bst2BI | CACGAG | 1 cut(s) | 1821 |
| Bst2UI | CCWGG | 6 cut(s) | 625, 733, 823, 1568, 2032, 3091 |
| Bst4CI | ACNGT | 4 cut(s) | 1009, 1434, 1546, 2059 |
| Bst6I | CTCTTC | 7 cut(s) | 101, 144, 285, 1090, 1114, 2598, 2798 |
| BstACI | GRCGYC | 1 cut(s) | 435 |
| BstAUI | TGTACA | 2 cut(s) | 2945, 3056 |
| BstBAI | YACGTR | 1 cut(s) | 2082 |
| BstC8I | GCNNGC | 8 cut(s) | 411, 878, 882, 2144, 2376, 2787, 2878, 2882 |
| BstDSI | CCRYGG | 5 cut(s) | 829, 1254, 1751, 1862, 2439 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 2109, 2803 |
| BstF5I | GGATG | 6 cut(s) | 798, 850, 1158, 2440, 2795, 2875 |
| BstH2I | RGCGCY | 1 cut(s) | 3203 |
| BstHHI | GCGC | 3 cut(s) | 528, 2460, 3202 |
| BstMAI | GTCTC | 6 cut(s) | 186, 1581, 1635, 1852, 2487, 2599 |
| BstNI | CCWGG | 6 cut(s) | 625, 733, 823, 1568, 2032, 3091 |
| BstNSI | RCATGY | 4 cut(s) | 880, 2015, 2146, 3057 |
| BstSCI | CCNGG | 7 cut(s) | 573, 623, 731, 821, 1566, 2030, 3089 |
| BstSFI | CTRYAG | 6 cut(s) | 213, 1398, 1482, 1503, 1545, 1634 |
| BstSLI | GKGCMC | 2 cut(s) | 293, 2422 |
| BstSNI | TACGTA | 1 cut(s) | 2082 |
| BstV1I | GCAGC | 5 cut(s) | 488, 812, 1171, 2530, 3044 |
| BstV2I | GAAGAC | 6 cut(s) | 960, 1110, 1428, 1678, 2264, 3000 |
| BstX2I | RGATCY | 3 cut(s) | 1138, 2043, 2894 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1463 |
| BstYI | RGATCY | 3 cut(s) | 1138, 2043, 2894 |
| Bsu36I | CCTNAGG | 1 cut(s) | 285 |
| BsuRI | GGCC | 9 cut(s) | 5, 133, 269, 541, 623, 826, 1571, 1993, 2682 |
| BtgI | CCRYGG | 5 cut(s) | 829, 1254, 1751, 1862, 2439 |
| BtrI | CACGTC | 1 cut(s) | 2473 |
| BtsCI | GGATG | 6 cut(s) | 798, 850, 1158, 2440, 2795, 2875 |
| BtsI | GCAGTG | 1 cut(s) | 291 |
| BtsIMutI | CAGTG | 4 cut(s) | 144, 291, 528, 2683 |
| BveI | ACCTGC | 1 cut(s) | 2179 |
| Cac8I | GCNNGC | 8 cut(s) | 411, 878, 882, 2144, 2376, 2787, 2878, 2882 |
| CaiI | CAGNNNCTG | 1 cut(s) | 3196 |
| CciI | TCATGA | 1 cut(s) | 3042 |
| CfoI | GCGC | 3 cut(s) | 528, 2460, 3202 |
| Cfr10I | RCCGGY | 3 cut(s) | 619, 2713, 3076 |
| Cfr13I | GGNCC | 5 cut(s) | 4, 131, 141, 267, 825 |
| CseI | GACGC | 2 cut(s) | 51, 443 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 3009, 3044 |
| DraI | TTTAAA | 2 cut(s) | 912, 2530 |
| EaeI | YGGCCR | 2 cut(s) | 621, 2680 |
| Eam1104I | CTCTTC | 7 cut(s) | 101, 144, 285, 1090, 1114, 2598, 2798 |
| EarI | CTCTTC | 7 cut(s) | 101, 144, 285, 1090, 1114, 2598, 2798 |
| Ecl136II | GAGCTC | 2 cut(s) | 2227, 2399 |
| Eco105I | TACGTA | 1 cut(s) | 2082 |
| Eco130I | CCWWGG | 4 cut(s) | 829, 1254, 1370, 1751 |
| Eco147I | AGGCCT | 1 cut(s) | 541 |
| Eco24I | GRGCYC | 2 cut(s) | 2229, 2401 |
| Eco31I | GGTCTC | 1 cut(s) | 1852 |
| Eco32I | GATATC | 2 cut(s) | 176, 2125 |
| Eco47I | GGWCC | 1 cut(s) | 141 |
| Eco53kI | GAGCTC | 2 cut(s) | 2227, 2399 |
| Eco57I | CTGAAG | 5 cut(s) | 168, 176, 1179, 1230, 2283 |
| Eco81I | CCTNAGG | 1 cut(s) | 285 |
| Eco88I | CYCGRG | 2 cut(s) | 567, 1853 |
| EcoICRI | GAGCTC | 2 cut(s) | 2227, 2399 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 2109, 2803 |
| EcoO109I | RGGNCCY | 3 cut(s) | 131, 267, 825 |
| EcoRI | GAATTC | 2 cut(s) | 1240, 2826 |
| EcoRII | CCWGG | 6 cut(s) | 623, 731, 821, 1566, 2030, 3089 |
| EcoRV | GATATC | 2 cut(s) | 176, 2125 |
| EcoT14I | CCWWGG | 4 cut(s) | 829, 1254, 1370, 1751 |
| EcoT38I | GRGCYC | 2 cut(s) | 2229, 2401 |
| ErhI | CCWWGG | 4 cut(s) | 829, 1254, 1370, 1751 |
| Esp3I | CGTCTC | 1 cut(s) | 2487 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 357, 389 |
| FaqI | GGGAC | 2 cut(s) | 463, 557 |
| FauNDI | CATATG | 1 cut(s) | 1648 |
| FbaI | TGATCA | 2 cut(s) | 1876, 2575 |
| FblI | GTMKAC | 1 cut(s) | 3150 |
| Fnu4HI | GCNGC | 7 cut(s) | 502, 801, 874, 1185, 2544, 2907, 3033 |
| FokI | GGATG | 6 cut(s) | 805, 857, 1165, 2447, 2782, 2882 |
| FriOI | GRGCYC | 2 cut(s) | 2229, 2401 |
| Fsp4HI | GCNGC | 7 cut(s) | 502, 801, 874, 1185, 2544, 2907, 3033 |
| FspBI | CTAG | 5 cut(s) | 393, 1022, 1029, 2037, 3114 |
| GlaI | GCGC | 3 cut(s) | 527, 2459, 3201 |
| GluI | GCNGC | 7 cut(s) | 502, 801, 874, 1185, 2544, 2907, 3033 |
| GsuI | CTGGAG | 1 cut(s) | 2659 |
| HaeII | RGCGCY | 1 cut(s) | 3203 |
| HaeIII | GGCC | 9 cut(s) | 5, 133, 269, 541, 623, 826, 1571, 1993, 2682 |
| HapII | CCGG | 6 cut(s) | 575, 620, 1918, 2661, 2714, 3077 |
| HgaI | GACGC | 2 cut(s) | 51, 443 |
| HhaI | GCGC | 3 cut(s) | 528, 2460, 3202 |
| Hin1I | GRCGYC | 1 cut(s) | 435 |
| Hin6I | GCGC | 3 cut(s) | 526, 2458, 3200 |
| HinP1I | GCGC | 3 cut(s) | 526, 2458, 3200 |
| HincII | GTYRAC | 3 cut(s) | 664, 2334, 2412 |
| HindII | GTYRAC | 3 cut(s) | 664, 2334, 2412 |
| HindIII | AAGCTT | 2 cut(s) | 407, 865 |
| HpaI | GTTAAC | 1 cut(s) | 664 |
| HpaII | CCGG | 6 cut(s) | 575, 620, 1918, 2661, 2714, 3077 |
| HphI | GGTGA | 7 cut(s) | 215, 609, 762, 1420, 1486, 2018, 3066 |
| HpyCH4III | ACNGT | 4 cut(s) | 1009, 1434, 1546, 2059 |
| HpyCH4IV | ACGT | 6 cut(s) | 220, 957, 1791, 2081, 2166, 2472 |
| HpySE526I | ACGT | 6 cut(s) | 220, 957, 1791, 2081, 2166, 2472 |
| Hsp92I | GRCGYC | 1 cut(s) | 435 |
| HspAI | GCGC | 3 cut(s) | 526, 2458, 3200 |
| Ksp22I | TGATCA | 2 cut(s) | 1876, 2575 |
| KspAI | GTTAAC | 1 cut(s) | 664 |
| LguI | GCTCTTC | 2 cut(s) | 144, 2598 |
| LmnI | GCTCC | 3 cut(s) | 2224, 2628, 2914 |
| Lsp1109I | GCAGC | 5 cut(s) | 488, 812, 1171, 2530, 3044 |
| LweI | GCATC | 8 cut(s) | 370, 500, 1108, 1143, 1612, 2361, 2425, 2863 |
| MaeI | CTAG | 5 cut(s) | 393, 1022, 1029, 2037, 3114 |
| MaeII | ACGT | 6 cut(s) | 220, 957, 1791, 2081, 2166, 2472 |
| MaeIII | GTNAC | 7 cut(s) | 221, 326, 1122, 1249, 1376, 2669, 3109 |
| MbiI | CCGCTC | 1 cut(s) | 2909 |
| MfeI | CAATTG | 2 cut(s) | 486, 1740 |
| MflI | RGATCY | 3 cut(s) | 1138, 2043, 2894 |
| MhlI | GDGCHC | 5 cut(s) | 293, 1643, 2229, 2401, 2422 |
| MlsI | TGGCCA | 1 cut(s) | 2682 |
| MluNI | TGGCCA | 1 cut(s) | 2682 |
| MlyI | GAGTC | 8 cut(s) | 556, 579, 730, 1100, 2498, 2531, 2666, 3196 |
| MmeI | TCCRAC | 5 cut(s) | 1072, 1774, 1984, 2000, 3006 |
| Mox20I | TGGCCA | 1 cut(s) | 2682 |
| MroXI | GAANNNNTTC | 4 cut(s) | 161, 1675, 1971, 2769 |
| MscI | TGGCCA | 1 cut(s) | 2682 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1708, 2727 |
| Msp20I | TGGCCA | 1 cut(s) | 2682 |
| MspA1I | CMGCKG | 1 cut(s) | 2560 |
| MspI | CCGG | 6 cut(s) | 575, 620, 1918, 2661, 2714, 3077 |
| MspR9I | CCNGG | 7 cut(s) | 575, 625, 733, 823, 1568, 2032, 3091 |
| MunI | CAATTG | 2 cut(s) | 486, 1740 |
| MvaI | CCWGG | 6 cut(s) | 625, 733, 823, 1568, 2032, 3091 |
| NciI | CCSGG | 1 cut(s) | 575 |
| NcoI | CCATGG | 3 cut(s) | 829, 1254, 1751 |
| NdeI | CATATG | 1 cut(s) | 1648 |
| NlaIV | GGNNCC | 3 cut(s) | 6, 388, 827 |
| NmeAIII | GCCGAG | 2 cut(s) | 1969, 2516 |
| NmuCI | GTSAC | 5 cut(s) | 221, 326, 1376, 2669, 3109 |
| NspI | RCATGY | 4 cut(s) | 880, 2015, 2146, 3057 |
| PaeI | GCATGC | 2 cut(s) | 880, 2146 |
| PaeR7I | CTCGAG | 1 cut(s) | 567 |
| PagI | TCATGA | 1 cut(s) | 3042 |
| PceI | AGGCCT | 1 cut(s) | 541 |
| PciI | ACATGT | 2 cut(s) | 2011, 3053 |
| PciSI | GCTCTTC | 2 cut(s) | 144, 2598 |
| PdmI | GAANNNNTTC | 4 cut(s) | 161, 1675, 1971, 2769 |
| PfeI | GAWTC | 6 cut(s) | 534, 1178, 1786, 2516, 3046, 3177 |
| PfoI | TCCNGGA | 1 cut(s) | 731 |
| PkrI | GCNGC | 7 cut(s) | 503, 802, 875, 1186, 2545, 2908, 3034 |
| PleI | GAGTC | 8 cut(s) | 556, 578, 730, 1100, 2498, 2530, 2666, 3195 |
| PpsI | GAGTC | 8 cut(s) | 556, 578, 730, 1100, 2498, 2530, 2666, 3195 |
| Ppu21I | YACGTR | 1 cut(s) | 2082 |
| PscI | ACATGT | 2 cut(s) | 2011, 3053 |
| PshBI | ATTAAT | 1 cut(s) | 2235 |
| PsiI | TTATAA | 3 cut(s) | 48, 1446, 1841 |
| Psp124BI | GAGCTC | 2 cut(s) | 2229, 2401 |
| Psp6I | CCWGG | 6 cut(s) | 623, 731, 821, 1566, 2030, 3089 |
| PspGI | CCWGG | 6 cut(s) | 623, 731, 821, 1566, 2030, 3089 |
| PspN4I | GGNNCC | 3 cut(s) | 6, 388, 827 |
| PspPI | GGNCC | 5 cut(s) | 4, 131, 141, 267, 825 |
| PspXI | VCTCGAGB | 1 cut(s) | 567 |
| PstI | CTGCAG | 1 cut(s) | 1638 |
| PstNI | CAGNNNCTG | 1 cut(s) | 3196 |
| PsuI | RGATCY | 3 cut(s) | 1138, 2043, 2894 |
| PvuII | CAGCTG | 1 cut(s) | 2560 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1708, 2727 |
| SacI | GAGCTC | 2 cut(s) | 2229, 2401 |
| SapI | GCTCTTC | 2 cut(s) | 144, 2598 |
| SatI | GCNGC | 7 cut(s) | 502, 801, 874, 1185, 2544, 2907, 3033 |
| Sau96I | GGNCC | 5 cut(s) | 4, 131, 141, 267, 825 |
| ScaI | AGTACT | 3 cut(s) | 763, 1006, 1781 |
| SchI | GAGTC | 8 cut(s) | 556, 579, 730, 1100, 2498, 2531, 2666, 3196 |
| ScrFI | CCNGG | 7 cut(s) | 575, 625, 733, 823, 1568, 2032, 3091 |
| SduI | GDGCHC | 5 cut(s) | 293, 1643, 2229, 2401, 2422 |
| SfaNI | GCATC | 8 cut(s) | 370, 500, 1108, 1143, 1612, 2361, 2425, 2863 |
| SfcI | CTRYAG | 6 cut(s) | 213, 1398, 1482, 1503, 1545, 1634 |
| Sfr274I | CTCGAG | 1 cut(s) | 567 |
| SinI | GGWCC | 1 cut(s) | 141 |
| SlaI | CTCGAG | 1 cut(s) | 567 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1708, 2727 |
| SmlI | CTYRAG | 5 cut(s) | 567, 1147, 1582, 2228, 2602 |
| SmoI | CTYRAG | 5 cut(s) | 567, 1147, 1582, 2228, 2602 |
| SnaBI | TACGTA | 1 cut(s) | 2082 |
| SpeI | ACTAGT | 1 cut(s) | 3113 |
| SphI | GCATGC | 2 cut(s) | 880, 2146 |
| SseBI | AGGCCT | 1 cut(s) | 541 |
| SsiI | CCGC | 2 cut(s) | 873, 2907 |
| SspMI | CTAG | 5 cut(s) | 393, 1022, 1029, 2037, 3114 |
| SstI | GAGCTC | 2 cut(s) | 2229, 2401 |
| StuI | AGGCCT | 1 cut(s) | 541 |
| StyD4I | CCNGG | 7 cut(s) | 573, 623, 731, 821, 1566, 2030, 3089 |
| StyI | CCWWGG | 4 cut(s) | 829, 1254, 1370, 1751 |
| TaaI | ACNGT | 4 cut(s) | 1009, 1434, 1546, 2059 |
| TaiI | ACGT | 6 cut(s) | 223, 960, 1794, 2084, 2169, 2475 |
| TaqI | TCGA | 2 cut(s) | 403, 568 |
| TatI | WGTACW | 8 cut(s) | 644, 761, 1004, 1552, 1779, 2059, 2945, 3056 |
| TauI | GCSGC | 2 cut(s) | 876, 2909 |
| TfiI | GAWTC | 6 cut(s) | 534, 1178, 1786, 2516, 3046, 3177 |
| TscAI | CASTG | 4 cut(s) | 151, 298, 535, 2683 |
| TseFI | GTSAC | 5 cut(s) | 221, 326, 1376, 2669, 3109 |
| TseI | GCWGC | 5 cut(s) | 501, 800, 1184, 2543, 3032 |
| Tsp45I | GTSAC | 5 cut(s) | 221, 326, 1376, 2669, 3109 |
| TspGWI | ACGGA | 8 cut(s) | 442, 1615, 1720, 1879, 2067, 2319, 2511, 3168 |
| TspRI | CASTG | 4 cut(s) | 151, 298, 535, 2683 |
| VpaK11BI | GGWCC | 1 cut(s) | 141 |
| VspI | ATTAAT | 1 cut(s) | 2235 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 2109, 2803 |
| XapI | RAATTY | 3 cut(s) | 1240, 1528, 2826 |
| XbaI | TCTAGA | 2 cut(s) | 392, 2036 |
| XceI | RCATGY | 4 cut(s) | 880, 2015, 2146, 3057 |
| XhoI | CTCGAG | 1 cut(s) | 567 |
| XmiI | GTMKAC | 1 cut(s) | 3150 |
| XmnI | GAANNNNTTC | 4 cut(s) | 161, 1675, 1971, 2769 |
| XspI | CTAG | 5 cut(s) | 393, 1022, 1029, 2037, 3114 |
| ZrmI | AGTACT | 3 cut(s) | 763, 1006, 1781 |