Rorug04G0173500
MYB Family

Protein ALWAYS EARLY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0003854
Physical Location & Seq
Forward (+)
30552454 .. 30555930
3477 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0173500.1

Sequence Viewer

Length: 1389 bp
ATGGCAGAAAAAAATGGTGGTAATCAAAGTCACATTCTTGTTTTCTTTTTTCCAGTTCAAGGTCATATGAACCCAATGGTTCAATTCTCCAAGCGCCTAGCCTCCAAGGGTCAAAAGGTCACAATAGTCACAACCACCTCTGCTAGCAAATCCATGAAAACAGGCTCTTTCGGACGCAACCTGAACATCGAACTTGTTTCAGATGGCTCCGAACATGTTCAGCAAGGGTCGGAAACTATGAAGCAATCTGTCGAGCGTGTCCAAACTGAAACTACGAAATCTCTAGTCGAGCTTATCAAGAAGATCAAGAATAGTAGTGATGCAAATGAGAAATACCTGCTCAAGTTCCTGGTTTACCATTACAGCATGCCTTGGGCTTTGAACATAGCACGAGAGCAAGGCATAGATGGTGGTCCATTTTATACAACTCCGGCTTCGGTTAAAACCATATGTTACCACTATCACAAAGGAGTACTGAAGCTTCCCTTAGAAGAGCCGACGAAAAAATTGCCTGGCCTACCACCACTACAGCTCGAAGATTTACCATCTTTTTTCTCAGATCCTAATTCAGACCCAGTTTTCGTTGACATTGCCATGCAGCAATTCTCCAATTTGAGTGAAGTGAAATGGATCTTCCATAGCACTTTCGAAAAATTGGAAAATGAGGTACTGGAATGGATGGCAAACCAAAACTTACCGATCAAGGCGATAGGACCTACAATTCCGTCAATGTTTTTGGACAAAAAGTTGGAGGATGACAAAGACTATGGTCTTAACCTTTTTGAGCCTAATGTGGAGTGCATGAAGTGGTTAGACTCCAAGAAGGAAACAGGTTCAGTCGTTTATGCATCATTTGGAAGTTTAGCCAACCTCACTAAAGAGCAATTTGAAGAACTAGCATGGGGTCTATATAACAGCAACCACAACTTCTTATGGGTAGTTCGAGAATCAGAAAAGGAAAAGCTCCCAACAAATTTCGGAGATAGGATAGCGGAGAAGGGTCTTGTGGTGACTTGGTGCACACAGTTACAAGTTTTAGCTCACAAGGCTGTGGGATGCTTTCTTACTCATTGTGGATGGAATTCGGCTCTCGAAGCATTAAGCTTGGGAGTACCAATGGTGGGAATGCCGCACCGGGCCGATCATCCAACTGTTGCTAAATATGTTAAGGATGTGTGGAAAGTCGGAGTTAGGGTAAAGGTGAAGGAGGGCTCTGTGACAAAAGAAGAAATAAGTGCATGTATTAGGCAAGTCATGGACACAGACAAAGGGATGGAGTTTAGAAAAGCTGCACTAGTTTGGAAGGAATTGGCTAAAGAGGCAATAGCTGAGGGTGGAAGCTCTGATAAGAACATTGAGGAATTTGTGGCAAAAATGAAGTTAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04218 map04218
Pfam Domains
Protein Families
DIRP Myb_DNA-binding

Protein Analysis

462

Amino Acids

51.94

Weight (kDa)

6.88

Isoelectric Point (pI)

39.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 25 - 422 3.7e-25 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 345
AciI CCGC 2 cut(s) 992, 1130
AclWI GGATC 2 cut(s) 554, 638
AcsI RAATTY 3 cut(s) 973, 1081, 1361
AcuI CTGAAG 1 cut(s) 497
AfaI GTAC 3 cut(s) 474, 669, 1113
AfiI CCNNNNNNNGG 2 cut(s) 59, 1121
AflIII ACRYGT 1 cut(s) 214
AgsI TTSAA 4 cut(s) 59, 83, 382, 890
AhlI ACTAGT 1 cut(s) 1294
AjnI CCWGG 2 cut(s) 348, 511
AluBI AGCT 9 cut(s) 292, 481, 532, 964, 1040, 1104, 1289, 1328, 1341
AluI AGCT 9 cut(s) 292, 481, 532, 964, 1040, 1104, 1289, 1328, 1341
Alw21I GWGCWC 1 cut(s) 1022
Alw44I GTGCAC 1 cut(s) 1018
AlwI GGATC 2 cut(s) 554, 638
AoxI GGCC 2 cut(s) 514, 1137
ApaLI GTGCAC 1 cut(s) 1018
ApeKI GCWGC 2 cut(s) 598, 1289
ApoI RAATTY 3 cut(s) 973, 1081, 1361
ArsI GACNNNNNNTTYG 2 cut(s) 563, 595
Asp700I GAANNNNTTC 1 cut(s) 216
AspLEI GCGC 1 cut(s) 96
AspS9I GGNCC 3 cut(s) 413, 713, 1137
AsuC2I CCSGG 1 cut(s) 1136
AsuHPI GGTGA 2 cut(s) 1021, 1213
AsuII TTCGAA 1 cut(s) 648
AsuNHI GCTAGC 1 cut(s) 143
AvaII GGWCC 2 cut(s) 413, 713
BaeGI GKGCMC 1 cut(s) 1022
BanII GRGCYC 1 cut(s) 1214
BarI GAAGNNNNNNTAC 2 cut(s) 465, 497
BauI CACGAG 1 cut(s) 390
Bbv12I GWGCWC 1 cut(s) 1022
BbvCI CCTCAGC 1 cut(s) 1329
BbvI GCAGC 2 cut(s) 610, 1276
BccI CCATC 6 cut(s) 197, 401, 553, 673, 1071, 1267
BcgI CGANNNNNNTGC 2 cut(s) 490, 524
BciT130I CCWGG 2 cut(s) 350, 513
BcnI CCSGG 1 cut(s) 1136
BcuI ACTAGT 1 cut(s) 1294
BfaI CTAG 5 cut(s) 98, 144, 284, 896, 1295
BfmI CTRYAG 1 cut(s) 527
BfoI RGCGCY 1 cut(s) 97
BfuAI ACCTGC 1 cut(s) 345
BisI GCNGC 3 cut(s) 599, 1130, 1290
BlsI GCNGC 3 cut(s) 600, 1131, 1291
BmcAI AGTACT 1 cut(s) 474
Bme1390I CCNGG 3 cut(s) 350, 513, 1136
Bme18I GGWCC 2 cut(s) 413, 713
BmgT120I GGNCC 3 cut(s) 413, 713, 1137
BmiI GGNNCC 1 cut(s) 208
BmrFI CCNGG 3 cut(s) 350, 513, 1136
BmrI ACTGGG 1 cut(s) 569
BmsI GCATC 3 cut(s) 310, 857, 1046
BmtI GCTAGC 1 cut(s) 147
BmuI ACTGGG 1 cut(s) 569
BoxI GACNNNNGTC 1 cut(s) 768
Bpu10I CCTNAGC 1 cut(s) 1329
Bpu14I TTCGAA 1 cut(s) 648
BpuEI CTTGAG 1 cut(s) 326
BpuMI CCSGG 1 cut(s) 1136
BsaJI CCNNGG 2 cut(s) 105, 371
BsaXI ACNNNNNCTCC 2 cut(s) 1179, 1209
Bsc4I CCNNNNNNNGG 2 cut(s) 59, 1121
Bse1I ACTGG 3 cut(s) 53, 575, 675
Bse3DI GCAATG 1 cut(s) 588
BseBI CCWGG 2 cut(s) 350, 513
BseDI CCNNGG 2 cut(s) 105, 371
BseGI GGATG 7 cut(s) 684, 760, 1061, 1082, 1144, 1177, 1278
BseLI CCNNNNNNNGG 2 cut(s) 59, 1121
BseMI GCAATG 1 cut(s) 588
BseMII CTCAG 2 cut(s) 570, 1320
BseNI ACTGG 3 cut(s) 53, 575, 675
BseSI GKGCMC 1 cut(s) 1022
BseXI GCAGC 2 cut(s) 610, 1276
BsgI GTGCAG 1 cut(s) 1275
BshFI GGCC 2 cut(s) 516, 1139
BsiHKAI GWGCWC 1 cut(s) 1022
BsiSI CCGG 2 cut(s) 431, 1135
BslI CCNNNNNNNGG 2 cut(s) 59, 1121
BsmI GAATGC 1 cut(s) 1131
BsnI GGCC 2 cut(s) 516, 1139
Bsp119I TTCGAA 1 cut(s) 648
Bsp1286I GDGCHC 2 cut(s) 1022, 1214
Bsp143I GATC 5 cut(s) 303, 559, 630, 699, 1141
BspACI CCGC 2 cut(s) 992, 1130
BspANI GGCC 2 cut(s) 516, 1139
BspCNI CTCAG 2 cut(s) 569, 1321
BspLI GGNNCC 1 cut(s) 208
BspMI ACCTGC 1 cut(s) 345
BspOI GCTAGC 1 cut(s) 147
BspPI GGATC 2 cut(s) 554, 638
BspQI GCTCTTC 1 cut(s) 486
BspT104I TTCGAA 1 cut(s) 648
BsrDI GCAATG 1 cut(s) 588
BsrI ACTGG 3 cut(s) 53, 575, 675
BssECI CCNNGG 2 cut(s) 105, 371
BssMI GATC 5 cut(s) 303, 559, 630, 699, 1141
BssSI CACGAG 1 cut(s) 390
BssT1I CCWWGG 2 cut(s) 105, 371
Bst2BI CACGAG 1 cut(s) 390
Bst2UI CCWGG 2 cut(s) 350, 513
Bst4CI ACNGT 2 cut(s) 1026, 1153
Bst6I CTCTTC 1 cut(s) 486
BstBI TTCGAA 1 cut(s) 648
BstC8I GCNNGC 2 cut(s) 145, 368
BstDEI CTNAG 3 cut(s) 487, 556, 1329
BstF5I GGATG 7 cut(s) 684, 760, 1061, 1082, 1144, 1177, 1278
BstH2I RGCGCY 1 cut(s) 97
BstHHI GCGC 1 cut(s) 96
BstKTI GATC 5 cut(s) 306, 562, 633, 702, 1144
BstMBI GATC 5 cut(s) 303, 559, 630, 699, 1141
BstMWI GCNNNNNNNGC 3 cut(s) 1046, 1094, 1319
BstNI CCWGG 2 cut(s) 350, 513
BstNSI RCATGY 3 cut(s) 218, 370, 1242
BstPAI GACNNNNGTC 1 cut(s) 768
BstSCI CCNGG 3 cut(s) 348, 511, 1134
BstSFI CTRYAG 1 cut(s) 527
BstSLI GKGCMC 1 cut(s) 1022
BstV1I GCAGC 2 cut(s) 610, 1276
BstX2I RGATCY 2 cut(s) 559, 630
BstYI RGATCY 2 cut(s) 559, 630
BsuRI GGCC 2 cut(s) 516, 1139
BtsCI GGATG 7 cut(s) 684, 760, 1061, 1082, 1144, 1177, 1278
BveI ACCTGC 1 cut(s) 345
Cac8I GCNNGC 2 cut(s) 145, 368
CfoI GCGC 1 cut(s) 96
Cfr13I GGNCC 3 cut(s) 413, 713, 1137
CseI GACGC 1 cut(s) 183
Csp6I GTAC 3 cut(s) 473, 668, 1112
CviAII CATG 8 cut(s) 154, 215, 367, 595, 802, 900, 1239, 1255
CviQI GTAC 3 cut(s) 473, 668, 1112
DdeI CTNAG 3 cut(s) 487, 556, 1329
DpnI GATC 5 cut(s) 305, 561, 632, 701, 1143
DpnII GATC 5 cut(s) 303, 559, 630, 699, 1141
Eam1104I CTCTTC 1 cut(s) 486
EarI CTCTTC 1 cut(s) 486
Eco130I CCWWGG 2 cut(s) 105, 371
Eco24I GRGCYC 1 cut(s) 1214
Eco47I GGWCC 2 cut(s) 413, 713
Eco57I CTGAAG 1 cut(s) 497
EcoO109I RGGNCCY 1 cut(s) 713
EcoRI GAATTC 1 cut(s) 1081
EcoRII CCWGG 2 cut(s) 348, 511
EcoT14I CCWWGG 2 cut(s) 105, 371
EcoT22I ATGCAT 1 cut(s) 850
EcoT38I GRGCYC 1 cut(s) 1214
ErhI CCWWGG 2 cut(s) 105, 371
FaeI CATG 8 cut(s) 157, 218, 370, 598, 805, 903, 1242, 1258
FalI AAGNNNNNCTT 2 cut(s) 470, 502
FatI CATG 8 cut(s) 153, 214, 366, 594, 801, 899, 1238, 1254
FauNDI CATATG 2 cut(s) 66, 449
Fnu4HI GCNGC 3 cut(s) 599, 1130, 1290
FokI GGATG 7 cut(s) 691, 767, 1068, 1089, 1131, 1184, 1285
FriOI GRGCYC 1 cut(s) 1214
Fsp4HI GCNGC 3 cut(s) 599, 1130, 1290
FspBI CTAG 5 cut(s) 98, 144, 284, 896, 1295
GlaI GCGC 1 cut(s) 95
GluI GCNGC 3 cut(s) 599, 1130, 1290
HaeII RGCGCY 1 cut(s) 97
HaeIII GGCC 2 cut(s) 516, 1139
HapII CCGG 2 cut(s) 431, 1135
HgaI GACGC 1 cut(s) 183
HhaI GCGC 1 cut(s) 96
Hin1II CATG 8 cut(s) 157, 218, 370, 598, 805, 903, 1242, 1258
Hin6I GCGC 1 cut(s) 94
HinP1I GCGC 1 cut(s) 94
HincII GTYRAC 2 cut(s) 586, 1383
HindII GTYRAC 2 cut(s) 586, 1383
HindIII AAGCTT 2 cut(s) 479, 1102
HinfI GANTC 2 cut(s) 815, 947
HpaI GTTAAC 1 cut(s) 1383
HpaII CCGG 2 cut(s) 431, 1135
HphI GGTGA 2 cut(s) 1021, 1213
Hpy166II GTNNAC 4 cut(s) 355, 586, 1020, 1383
Hpy188III TCNNGA 4 cut(s) 298, 307, 944, 1091
Hpy8I GTNNAC 4 cut(s) 355, 586, 1020, 1383
Hpy99I CGWCG 1 cut(s) 502
HpyAV CCTTC 4 cut(s) 817, 991, 1198, 1297
HpyCH4III ACNGT 2 cut(s) 1026, 1153
HpyCH4V TGCA 7 cut(s) 323, 598, 801, 848, 1020, 1238, 1292
HpyF10VI GCNNNNNNNGC 3 cut(s) 1046, 1094, 1319
HpyF3I CTNAG 3 cut(s) 487, 556, 1329
Hsp92II CATG 8 cut(s) 157, 218, 370, 598, 805, 903, 1242, 1258
HspAI GCGC 1 cut(s) 94
KspAI GTTAAC 1 cut(s) 1383
Kzo9I GATC 5 cut(s) 303, 559, 630, 699, 1141
LguI GCTCTTC 1 cut(s) 486
LmnI GCTCC 2 cut(s) 212, 969
Lsp1109I GCAGC 2 cut(s) 610, 1276
LweI GCATC 3 cut(s) 310, 857, 1046
MaeI CTAG 5 cut(s) 98, 144, 284, 896, 1295
MaeIII GTNAC 7 cut(s) 29, 118, 127, 452, 1009, 1026, 1216
MalI GATC 5 cut(s) 305, 561, 632, 701, 1143
MboI GATC 5 cut(s) 303, 559, 630, 699, 1141
MboII GAAGA 6 cut(s) 313, 503, 548, 625, 902, 1238
MflI RGATCY 2 cut(s) 559, 630
MhlI GDGCHC 2 cut(s) 1022, 1214
MlyI GAGTC 1 cut(s) 809
MmeI TCCRAC 4 cut(s) 210, 729, 1165, 1172
MnlI CCTC 9 cut(s) 112, 148, 658, 745, 881, 1201, 1312, 1324, 1351
Mph1103I ATGCAT 1 cut(s) 850
MroXI GAANNNNTTC 1 cut(s) 216
MseI TTAA 6 cut(s) 441, 774, 1100, 1167, 1382, 1387
MslI CAYNNNNRTG 1 cut(s) 593
MspI CCGG 2 cut(s) 431, 1135
MspR9I CCNGG 3 cut(s) 350, 513, 1136
Mva1269I GAATGC 1 cut(s) 1131
MvaI CCWGG 2 cut(s) 350, 513
MwoI GCNNNNNNNGC 3 cut(s) 1046, 1094, 1319
NciI CCSGG 1 cut(s) 1136
NdeI CATATG 2 cut(s) 66, 449
NdeII GATC 5 cut(s) 303, 559, 630, 699, 1141
NheI GCTAGC 1 cut(s) 143
NlaIII CATG 8 cut(s) 157, 218, 370, 598, 805, 903, 1242, 1258
NlaIV GGNNCC 1 cut(s) 208
NmuCI GTSAC 5 cut(s) 29, 118, 127, 1009, 1216
NsiI ATGCAT 1 cut(s) 850
NspI RCATGY 3 cut(s) 218, 370, 1242
NspV TTCGAA 1 cut(s) 648
PaeI GCATGC 1 cut(s) 370
PciI ACATGT 1 cut(s) 214
PciSI GCTCTTC 1 cut(s) 486
PctI GAATGC 1 cut(s) 1131
PdmI GAANNNNTTC 1 cut(s) 216
PfeI GAWTC 1 cut(s) 947
PkrI GCNGC 3 cut(s) 600, 1131, 1291
PleI GAGTC 1 cut(s) 809
PpsI GAGTC 1 cut(s) 809
PpuMI RGGWCCY 1 cut(s) 713
PscI ACATGT 1 cut(s) 214
PshAI GACNNNNGTC 1 cut(s) 768
Psp5II RGGWCCY 1 cut(s) 713
Psp6I CCWGG 2 cut(s) 348, 511
PspGI CCWGG 2 cut(s) 348, 511
PspN4I GGNNCC 1 cut(s) 208
PspPI GGNCC 3 cut(s) 413, 713, 1137
PspPPI RGGWCCY 1 cut(s) 713
PsuI RGATCY 2 cut(s) 559, 630
RsaI GTAC 3 cut(s) 474, 669, 1113
RsaNI GTAC 3 cut(s) 473, 668, 1112
RseI CAYNNNNRTG 1 cut(s) 593
SapI GCTCTTC 1 cut(s) 486
SaqAI TTAA 6 cut(s) 441, 774, 1100, 1167, 1382, 1387
SatI GCNGC 3 cut(s) 599, 1130, 1290
Sau3AI GATC 5 cut(s) 303, 559, 630, 699, 1141
Sau96I GGNCC 3 cut(s) 413, 713, 1137
ScaI AGTACT 1 cut(s) 474
SchI GAGTC 1 cut(s) 809
ScrFI CCNGG 3 cut(s) 350, 513, 1136
SduI GDGCHC 2 cut(s) 1022, 1214
SfaNI GCATC 3 cut(s) 310, 857, 1046
SfcI CTRYAG 1 cut(s) 527
SfuI TTCGAA 1 cut(s) 648
SinI GGWCC 2 cut(s) 413, 713
SmiMI CAYNNNNRTG 1 cut(s) 593
SmlI CTYRAG 1 cut(s) 341
SmoI CTYRAG 1 cut(s) 341
SpeI ACTAGT 1 cut(s) 1294
SphI GCATGC 1 cut(s) 370
SsiI CCGC 2 cut(s) 992, 1130
SspMI CTAG 5 cut(s) 98, 144, 284, 896, 1295
StyD4I CCNGG 3 cut(s) 348, 511, 1134
StyI CCWWGG 2 cut(s) 105, 371
TaaI ACNGT 2 cut(s) 1026, 1153
TaqI TCGA 7 cut(s) 189, 252, 288, 534, 648, 943, 1092
TatI WGTACW 1 cut(s) 472
TauI GCSGC 1 cut(s) 1132
TfiI GAWTC 1 cut(s) 947
Tru1I TTAA 6 cut(s) 441, 774, 1100, 1167, 1382, 1387
Tru9I TTAA 6 cut(s) 441, 774, 1100, 1167, 1382, 1387
TseFI GTSAC 5 cut(s) 29, 118, 127, 1009, 1216
TseI GCWGC 2 cut(s) 598, 1289
Tsp45I GTSAC 5 cut(s) 29, 118, 127, 1009, 1216
TspDTI ATGAA 4 cut(s) 83, 170, 254, 818
TspGWI ACGGA 1 cut(s) 714
VneI GTGCAC 1 cut(s) 1018
VpaK11BI GGWCC 2 cut(s) 413, 713
XapI RAATTY 3 cut(s) 973, 1081, 1361
XceI RCATGY 3 cut(s) 218, 370, 1242
XmnI GAANNNNTTC 1 cut(s) 216
XspI CTAG 5 cut(s) 98, 144, 284, 896, 1295
ZrmI AGTACT 1 cut(s) 474
Zsp2I ATGCAT 1 cut(s) 850
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.