Protein ALWAYS EARLY
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G21430 AT3G21430 AT3G21430 |
| fragaria_vesca | FvH4_4g17660 FvH4_4g17660 FvH4_4g17660 FvH4_4g17660 |
| malus_domestica | MD16G1172500.v1.1 MD16G1172600.v1.1 |
| prunus_persica | Prupe.1G139300_v2.0.a1 Prupe.1G139300_v2.0.a1 Prupe.1G139300_v2.0.a1 Prupe.1G139300_v2.0.a1 Prupe.1G139300_v2.0.a1 Prupe.1G139300_v2.0.a1 Prupe.1G139300_v2.0.a1 Prupe.1G139300_v2.0.a1 Prupe.1G139300_v2.0.a1 |
| pyrus_communis | pycom16g14470 |
| rosa_chinensis | RchiOBHm_Chr4g0421601 |
| rosa_laevigata | RLG00000007665 RLG00000008391 |
| rosa_multiflora | Rmu_ssc0000097.1_g000002 |
| rosa_roxburghii | Rroxscaffold_5G00363850 |
| rosa_rugosa | Rorug04G0173300 Rorug04G0173400 Rorug04G0173500 Rorug04G0173600 Rorug04G0173700 |
| rosa_samantha | Rh4AG233400 Rh4BG236300 Rh4CG248000 Rh4DG232200 |
| rosa_wichuraiana | Rw4G020070 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 3 cut(s) | 1618, 2254, 2792 |
| AccB1I | GGYRCC | 1 cut(s) | 3268 |
| AccI | GTMKAC | 2 cut(s) | 1670, 2145 |
| AccII | CGCG | 1 cut(s) | 3127 |
| AciI | CCGC | 4 cut(s) | 981, 2709, 2845, 3197 |
| AclWI | GGATC | 4 cut(s) | 1047, 2443, 2945, 3017 |
| AcoI | YGGCCR | 1 cut(s) | 2755 |
| AcsI | RAATTY | 2 cut(s) | 362, 2239 |
| AcuI | CTGAAG | 4 cut(s) | 246, 1982, 2367, 3165 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 424, 901, 1493, 2186, 2458, 2797, 2851 |
| AflII | CTTAAG | 1 cut(s) | 2677 |
| AflIII | ACRYGT | 3 cut(s) | 63, 1192, 3116 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 445, 2087 |
| AhlI | ACTAGT | 1 cut(s) | 3176 |
| AjnI | CCWGG | 7 cut(s) | 566, 761, 1255, 1596, 2105, 2749, 3153 |
| Alw21I | GWGCWC | 4 cut(s) | 2313, 2387, 2500, 2628 |
| Alw26I | GTCTC | 3 cut(s) | 382, 1770, 2568 |
| Alw44I | GTGCAC | 1 cut(s) | 2496 |
| AlwI | GGATC | 4 cut(s) | 1047, 2443, 2945, 3017 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 824, 1960 |
| Ama87I | CYCGRG | 1 cut(s) | 507 |
| AoxI | GGCC | 9 cut(s) | 71, 186, 207, 479, 642, 972, 1599, 2066, 2755 |
| ApaLI | GTGCAC | 1 cut(s) | 2496 |
| ApeKI | GCWGC | 7 cut(s) | 149, 1424, 2404, 2618, 2861, 3095, 3184 |
| ApoI | RAATTY | 2 cut(s) | 362, 2239 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1378, 1410 |
| AseI | ATTAAT | 1 cut(s) | 2319 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2046 |
| AspLEI | GCGC | 3 cut(s) | 468, 2688, 3127 |
| AspS9I | GGNCC | 3 cut(s) | 71, 187, 2930 |
| AsuC2I | CCSGG | 1 cut(s) | 1293 |
| AsuHPI | GGTGA | 7 cut(s) | 552, 668, 737, 1307, 1447, 1516, 2734 |
| AvaI | CYCGRG | 1 cut(s) | 507 |
| AvaII | GGWCC | 1 cut(s) | 2930 |
| BaeGI | GKGCMC | 1 cut(s) | 2500 |
| BaeI | ACNNNNGTAYC | 1 cut(s) | 3248 |
| BalI | TGGCCA | 1 cut(s) | 2757 |
| BanI | GGYRCC | 1 cut(s) | 3268 |
| BanII | GRGCYC | 1 cut(s) | 2313 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 1450, 1482, 2454, 2486 |
| BauI | CACGAG | 2 cut(s) | 1896, 2493 |
| BbsI | GAAGAC | 3 cut(s) | 840, 966, 1176 |
| Bbv12I | GWGCWC | 4 cut(s) | 2313, 2387, 2500, 2628 |
| BbvI | GCAGC | 7 cut(s) | 136, 1411, 2416, 2605, 2873, 3107, 3196 |
| BccI | CCATC | 7 cut(s) | 727, 1594, 1660, 1779, 2416, 2564, 2867 |
| BceAI | ACGGC | 1 cut(s) | 3155 |
| BciT130I | CCWGG | 7 cut(s) | 568, 763, 1257, 1598, 2107, 2751, 3155 |
| BclI | TGATCA | 4 cut(s) | 1537, 1984, 2173, 2650 |
| BcnI | CCSGG | 1 cut(s) | 1293 |
| BcoDI | GTCTC | 3 cut(s) | 382, 1770, 2568 |
| BcuI | ACTAGT | 1 cut(s) | 3176 |
| BfaI | CTAG | 8 cut(s) | 528, 590, 774, 2112, 2186, 2367, 3177, 3260 |
| BfmI | CTRYAG | 7 cut(s) | 153, 171, 516, 1425, 1514, 2619, 2946 |
| BfoI | RGCGCY | 1 cut(s) | 469 |
| BfrI | CTTAAG | 1 cut(s) | 2677 |
| BfuAI | ACCTGC | 3 cut(s) | 1618, 2254, 2792 |
| BglII | AGATCT | 1 cut(s) | 1144 |
| BisI | GCNGC | 7 cut(s) | 150, 1425, 2405, 2619, 2862, 3096, 3185 |
| BlsI | GCNGC | 7 cut(s) | 151, 1426, 2406, 2620, 2863, 3097, 3186 |
| BmcAI | AGTACT | 1 cut(s) | 1856 |
| Bme1390I | CCNGG | 8 cut(s) | 568, 763, 1257, 1293, 1598, 2107, 2751, 3155 |
| Bme18I | GGWCC | 1 cut(s) | 2930 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 445, 2087 |
| BmeT110I | CYCGRG | 1 cut(s) | 507 |
| BmgT120I | GGNCC | 3 cut(s) | 71, 187, 2930 |
| BmiI | GGNNCC | 5 cut(s) | 767, 1710, 2931, 3251, 3270 |
| BmrFI | CCNGG | 8 cut(s) | 568, 763, 1257, 1293, 1598, 2107, 2751, 3155 |
| BmrI | ACTGGG | 2 cut(s) | 293, 579 |
| BmsI | GCATC | 7 cut(s) | 437, 1114, 1149, 1532, 2503, 2848, 2905 |
| BmuI | ACTGGG | 2 cut(s) | 293, 579 |
| BoxI | GACNNNNGTC | 1 cut(s) | 374 |
| BpiI | GAAGAC | 3 cut(s) | 840, 966, 1176 |
| Bpu10I | CCTNAGC | 2 cut(s) | 469, 808 |
| BpuEI | CTTGAG | 2 cut(s) | 2297, 2952 |
| BpuMI | CCSGG | 1 cut(s) | 1293 |
| BsaI | GGTCTC | 1 cut(s) | 382 |
| BsaJI | CCNNGG | 9 cut(s) | 332, 1256, 1826, 1927, 1937, 2105, 2730, 2749, 3153 |
| BsaWI | WCCGGW | 1 cut(s) | 1328 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 424, 901, 1493, 2186, 2458, 2797, 2851 |
| Bse118I | RCCGGY | 1 cut(s) | 974 |
| Bse1I | ACTGG | 5 cut(s) | 288, 585, 1318, 2231, 2954 |
| Bse3DI | GCAATG | 2 cut(s) | 264, 2091 |
| BseBI | CCWGG | 7 cut(s) | 568, 763, 1257, 1598, 2107, 2751, 3155 |
| BseDI | CCNNGG | 9 cut(s) | 332, 1256, 1826, 1927, 1937, 2105, 2730, 2749, 3153 |
| BseGI | GGATG | 4 cut(s) | 790, 2101, 2518, 2878 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 424, 901, 1493, 2186, 2458, 2797, 2851 |
| BseMI | GCAATG | 2 cut(s) | 264, 2091 |
| BseMII | CTCAG | 7 cut(s) | 363, 483, 630, 1665, 1941, 2517, 2586 |
| BseNI | ACTGG | 5 cut(s) | 288, 585, 1318, 2231, 2954 |
| BseRI | GAGGAG | 3 cut(s) | 495, 1565, 2892 |
| BseSI | GKGCMC | 1 cut(s) | 2500 |
| BseXI | GCAGC | 7 cut(s) | 136, 1411, 2416, 2605, 2873, 3107, 3196 |
| BseYI | CCCAGC | 1 cut(s) | 2926 |
| BsgI | GTGCAG | 1 cut(s) | 1173 |
| Bsh1236I | CGCG | 1 cut(s) | 3127 |
| BshFI | GGCC | 9 cut(s) | 73, 188, 209, 481, 644, 974, 1601, 2068, 2757 |
| BshNI | GGYRCC | 1 cut(s) | 3268 |
| BsiHKAI | GWGCWC | 4 cut(s) | 2313, 2387, 2500, 2628 |
| BsiHKCI | CYCGRG | 1 cut(s) | 507 |
| BsiSI | CCGG | 3 cut(s) | 975, 1292, 1329 |
| BslFI | GGGAC | 3 cut(s) | 497, 2691, 2943 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 424, 901, 1493, 2186, 2458, 2797, 2851 |
| BsmAI | GTCTC | 3 cut(s) | 382, 1770, 2568 |
| BsmFI | GGGAC | 3 cut(s) | 497, 2691, 2943 |
| BsmI | GAATGC | 1 cut(s) | 1525 |
| BsnI | GGCC | 9 cut(s) | 73, 188, 209, 481, 644, 974, 1601, 2068, 2757 |
| Bso31I | GGTCTC | 1 cut(s) | 382 |
| BsoBI | CYCGRG | 1 cut(s) | 507 |
| Bsp1286I | GDGCHC | 4 cut(s) | 2313, 2387, 2500, 2628 |
| Bsp1407I | TGTACA | 2 cut(s) | 2987, 3119 |
| Bsp19I | CCATGG | 2 cut(s) | 1826, 2730 |
| BspACI | CCGC | 4 cut(s) | 981, 2709, 2845, 3197 |
| BspANI | GGCC | 9 cut(s) | 73, 188, 209, 481, 644, 974, 1601, 2068, 2757 |
| BspCNI | CTCAG | 7 cut(s) | 364, 482, 631, 1666, 1942, 2518, 2587 |
| BspFNI | CGCG | 1 cut(s) | 3127 |
| BspHI | TCATGA | 1 cut(s) | 1540 |
| BspLI | GGNNCC | 5 cut(s) | 767, 1710, 2931, 3251, 3270 |
| BspMAI | CTGCAG | 3 cut(s) | 1429, 2623, 2950 |
| BspMI | ACCTGC | 3 cut(s) | 1618, 2254, 2792 |
| BspPI | GGATC | 4 cut(s) | 1047, 2443, 2945, 3017 |
| BspQI | GCTCTTC | 1 cut(s) | 84 |
| BspT107I | GGYRCC | 1 cut(s) | 3268 |
| BspTI | CTTAAG | 1 cut(s) | 2677 |
| BspTNI | GGTCTC | 1 cut(s) | 382 |
| BsrDI | GCAATG | 2 cut(s) | 264, 2091 |
| BsrFI | RCCGGY | 1 cut(s) | 974 |
| BsrGI | TGTACA | 2 cut(s) | 2987, 3119 |
| BsrI | ACTGG | 5 cut(s) | 288, 585, 1318, 2231, 2954 |
| BssAI | RCCGGY | 1 cut(s) | 974 |
| BssECI | CCNNGG | 9 cut(s) | 332, 1256, 1826, 1927, 1937, 2105, 2730, 2749, 3153 |
| BssSI | CACGAG | 2 cut(s) | 1896, 2493 |
| BssT1I | CCWWGG | 4 cut(s) | 332, 1826, 1927, 2730 |
| Bst2BI | CACGAG | 2 cut(s) | 1896, 2493 |
| Bst2UI | CCWGG | 7 cut(s) | 568, 763, 1257, 1598, 2107, 2751, 3155 |
| Bst6I | CTCTTC | 3 cut(s) | 84, 225, 902 |
| BstAFI | CTTAAG | 1 cut(s) | 2677 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1046, 1354 |
| BstAUI | TGTACA | 2 cut(s) | 2987, 3119 |
| BstC8I | GCNNGC | 5 cut(s) | 29, 2219, 2845, 2920, 2924 |
| BstDSI | CCRYGG | 3 cut(s) | 1826, 1937, 2730 |
| BstEII | GGTNACC | 1 cut(s) | 1313 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2184 |
| BstF5I | GGATG | 4 cut(s) | 790, 2101, 2518, 2878 |
| BstFNI | CGCG | 1 cut(s) | 3127 |
| BstH2I | RGCGCY | 1 cut(s) | 469 |
| BstHHI | GCGC | 3 cut(s) | 468, 2688, 3127 |
| BstMAI | GTCTC | 3 cut(s) | 382, 1770, 2568 |
| BstNI | CCWGG | 7 cut(s) | 568, 763, 1257, 1598, 2107, 2751, 3155 |
| BstNSI | RCATGY | 6 cut(s) | 31, 67, 1196, 2090, 2221, 3120 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 374 |
| BstPI | GGTNACC | 1 cut(s) | 1313 |
| BstSCI | CCNGG | 8 cut(s) | 566, 761, 1255, 1291, 1596, 2105, 2749, 3153 |
| BstSFI | CTRYAG | 7 cut(s) | 153, 171, 516, 1425, 1514, 2619, 2946 |
| BstSLI | GKGCMC | 1 cut(s) | 2500 |
| BstUI | CGCG | 1 cut(s) | 3127 |
| BstV1I | GCAGC | 7 cut(s) | 136, 1411, 2416, 2605, 2873, 3107, 3196 |
| BstV2I | GAAGAC | 3 cut(s) | 840, 966, 1176 |
| BstX2I | RGATCY | 4 cut(s) | 1052, 1144, 2448, 2950 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2570 |
| BstYI | RGATCY | 4 cut(s) | 1052, 1144, 2448, 2950 |
| BsuRI | GGCC | 9 cut(s) | 73, 188, 209, 481, 644, 974, 1601, 2068, 2757 |
| BtgI | CCRYGG | 3 cut(s) | 1826, 1937, 2730 |
| BtgZI | GCGATG | 1 cut(s) | 2394 |
| BtsCI | GGATG | 4 cut(s) | 790, 2101, 2518, 2878 |
| BtsI | GCAGTG | 2 cut(s) | 867, 2628 |
| BtsIMutI | CAGTG | 6 cut(s) | 304, 449, 867, 2238, 2385, 2628 |
| BveI | ACCTGC | 3 cut(s) | 1618, 2254, 2792 |
| Cac8I | GCNNGC | 5 cut(s) | 29, 2219, 2845, 2920, 2924 |
| CaiI | CAGNNNCTG | 2 cut(s) | 824, 1960 |
| CciI | TCATGA | 1 cut(s) | 1540 |
| CfoI | GCGC | 3 cut(s) | 468, 2688, 3127 |
| Cfr10I | RCCGGY | 1 cut(s) | 974 |
| Cfr13I | GGNCC | 3 cut(s) | 71, 187, 2930 |
| CseI | GACGC | 1 cut(s) | 1385 |
| DraI | TTTAAA | 4 cut(s) | 579, 1363, 2226, 2605 |
| DriI | GACNNNNNGTC | 2 cut(s) | 445, 2087 |
| EaeI | YGGCCR | 1 cut(s) | 2755 |
| Eam1104I | CTCTTC | 3 cut(s) | 84, 225, 902 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 445, 2087 |
| EarI | CTCTTC | 3 cut(s) | 84, 225, 902 |
| Ecl136II | GAGCTC | 1 cut(s) | 2311 |
| Eco130I | CCWWGG | 4 cut(s) | 332, 1826, 1927, 2730 |
| Eco147I | AGGCCT | 3 cut(s) | 209, 481, 644 |
| Eco24I | GRGCYC | 1 cut(s) | 2313 |
| Eco31I | GGTCTC | 1 cut(s) | 382 |
| Eco47I | GGWCC | 1 cut(s) | 2930 |
| Eco53kI | GAGCTC | 1 cut(s) | 2311 |
| Eco57I | CTGAAG | 4 cut(s) | 246, 1982, 2367, 3165 |
| Eco88I | CYCGRG | 1 cut(s) | 507 |
| Eco91I | GGTNACC | 1 cut(s) | 1313 |
| EcoICRI | GAGCTC | 1 cut(s) | 2311 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2184 |
| EcoO109I | RGGNCCY | 3 cut(s) | 71, 187, 2930 |
| EcoO65I | GGTNACC | 1 cut(s) | 1313 |
| EcoRII | CCWGG | 7 cut(s) | 566, 761, 1255, 1596, 2105, 2749, 3153 |
| EcoT14I | CCWWGG | 4 cut(s) | 332, 1826, 1927, 2730 |
| EcoT22I | ATGCAT | 1 cut(s) | 1525 |
| EcoT38I | GRGCYC | 1 cut(s) | 2313 |
| ErhI | CCWWGG | 4 cut(s) | 332, 1826, 1927, 2730 |
| FaqI | GGGAC | 3 cut(s) | 497, 2691, 2943 |
| FauI | CCCGC | 2 cut(s) | 2716, 2852 |
| FbaI | TGATCA | 4 cut(s) | 1537, 1984, 2173, 2650 |
| FblI | GTMKAC | 2 cut(s) | 1670, 2145 |
| Fnu4HI | GCNGC | 7 cut(s) | 150, 1425, 2405, 2619, 2862, 3096, 3185 |
| FokI | GGATG | 4 cut(s) | 797, 2088, 2525, 2885 |
| FriOI | GRGCYC | 1 cut(s) | 2313 |
| Fsp4HI | GCNGC | 7 cut(s) | 150, 1425, 2405, 2619, 2862, 3096, 3185 |
| FspBI | CTAG | 8 cut(s) | 528, 590, 774, 2112, 2186, 2367, 3177, 3260 |
| GlaI | GCGC | 3 cut(s) | 467, 2687, 3126 |
| GluI | GCNGC | 7 cut(s) | 150, 1425, 2405, 2619, 2862, 3096, 3185 |
| GsaI | CCCAGC | 1 cut(s) | 2930 |
| HaeII | RGCGCY | 1 cut(s) | 469 |
| HaeIII | GGCC | 9 cut(s) | 73, 188, 209, 481, 644, 974, 1601, 2068, 2757 |
| HapII | CCGG | 3 cut(s) | 975, 1292, 1329 |
| HgaI | GACGC | 1 cut(s) | 1385 |
| HhaI | GCGC | 3 cut(s) | 468, 2688, 3127 |
| Hin6I | GCGC | 3 cut(s) | 466, 2686, 3125 |
| HinP1I | GCGC | 3 cut(s) | 466, 2686, 3125 |
| HincII | GTYRAC | 3 cut(s) | 2146, 2284, 2490 |
| HindII | GTYRAC | 3 cut(s) | 2146, 2284, 2490 |
| HindIII | AAGCTT | 1 cut(s) | 1979 |
| HpaII | CCGG | 3 cut(s) | 975, 1292, 1329 |
| HphI | GGTGA | 7 cut(s) | 552, 668, 737, 1307, 1447, 1516, 2734 |
| Hpy99I | CGWCG | 1 cut(s) | 2147 |
| HpyCH4IV | ACGT | 1 cut(s) | 3039 |
| HpySE526I | ACGT | 1 cut(s) | 3039 |
| HspAI | GCGC | 3 cut(s) | 466, 2686, 3125 |
| Ksp22I | TGATCA | 4 cut(s) | 1537, 1984, 2173, 2650 |
| LguI | GCTCTTC | 1 cut(s) | 84 |
| LmnI | GCTCC | 4 cut(s) | 81, 771, 1401, 2308 |
| Lsp1109I | GCAGC | 7 cut(s) | 136, 1411, 2416, 2605, 2873, 3107, 3196 |
| LweI | GCATC | 7 cut(s) | 437, 1114, 1149, 1532, 2503, 2848, 2905 |
| MaeI | CTAG | 8 cut(s) | 528, 590, 774, 2112, 2186, 2367, 3177, 3260 |
| MaeII | ACGT | 1 cut(s) | 3039 |
| MaeIII | GTNAC | 7 cut(s) | 293, 434, 447, 1313, 1721, 2369, 3172 |
| MfeI | CAATTG | 2 cut(s) | 1349, 1815 |
| MflI | RGATCY | 4 cut(s) | 1052, 1144, 2448, 2950 |
| MhlI | GDGCHC | 4 cut(s) | 2313, 2387, 2500, 2628 |
| MlsI | TGGCCA | 1 cut(s) | 2757 |
| MluNI | TGGCCA | 1 cut(s) | 2757 |
| MlyI | GAGTC | 8 cut(s) | 496, 519, 1190, 1676, 2485, 2606, 2647, 2713 |
| MmeI | TCCRAC | 5 cut(s) | 39, 919, 1379, 1849, 2075 |
| Mox20I | TGGCCA | 1 cut(s) | 2757 |
| Mph1103I | ATGCAT | 1 cut(s) | 1525 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2046 |
| MscI | TGGCCA | 1 cut(s) | 2757 |
| MslI | CAYNNNNRTG | 4 cut(s) | 105, 654, 2541, 2568 |
| Msp20I | TGGCCA | 1 cut(s) | 2757 |
| MspA1I | CMGCKG | 1 cut(s) | 3020 |
| MspCI | CTTAAG | 1 cut(s) | 2677 |
| MspI | CCGG | 3 cut(s) | 975, 1292, 1329 |
| MspR9I | CCNGG | 8 cut(s) | 568, 763, 1257, 1293, 1598, 2107, 2751, 3155 |
| MunI | CAATTG | 2 cut(s) | 1349, 1815 |
| Mva1269I | GAATGC | 1 cut(s) | 1525 |
| MvaI | CCWGG | 7 cut(s) | 568, 763, 1257, 1598, 2107, 2751, 3155 |
| MvnI | CGCG | 1 cut(s) | 3127 |
| NciI | CCSGG | 1 cut(s) | 1293 |
| NcoI | CCATGG | 2 cut(s) | 1826, 2730 |
| NlaIV | GGNNCC | 5 cut(s) | 767, 1710, 2931, 3251, 3270 |
| NmeAIII | GCCGAG | 1 cut(s) | 2044 |
| NmuCI | GTSAC | 5 cut(s) | 293, 447, 1313, 2369, 3172 |
| NsiI | ATGCAT | 1 cut(s) | 1525 |
| NspI | RCATGY | 6 cut(s) | 31, 67, 1196, 2090, 2221, 3120 |
| PaeI | GCATGC | 2 cut(s) | 31, 2221 |
| PaeR7I | CTCGAG | 1 cut(s) | 507 |
| PagI | TCATGA | 1 cut(s) | 1540 |
| PceI | AGGCCT | 3 cut(s) | 209, 481, 644 |
| PciI | ACATGT | 3 cut(s) | 63, 1192, 3116 |
| PciSI | GCTCTTC | 1 cut(s) | 84 |
| PctI | GAATGC | 1 cut(s) | 1525 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2046 |
| PkrI | GCNGC | 7 cut(s) | 151, 1426, 2406, 2620, 2863, 3097, 3186 |
| PleI | GAGTC | 8 cut(s) | 496, 518, 1189, 1675, 2485, 2605, 2646, 2712 |
| PpsI | GAGTC | 8 cut(s) | 496, 518, 1189, 1675, 2485, 2605, 2646, 2712 |
| PpuMI | RGGWCCY | 1 cut(s) | 2930 |
| PscI | ACATGT | 3 cut(s) | 63, 1192, 3116 |
| PshAI | GACNNNNGTC | 1 cut(s) | 374 |
| PshBI | ATTAAT | 1 cut(s) | 2319 |
| Psp124BI | GAGCTC | 1 cut(s) | 2313 |
| Psp5II | RGGWCCY | 1 cut(s) | 2930 |
| Psp6I | CCWGG | 7 cut(s) | 566, 761, 1255, 1596, 2105, 2749, 3153 |
| PspEI | GGTNACC | 1 cut(s) | 1313 |
| PspFI | CCCAGC | 1 cut(s) | 2926 |
| PspGI | CCWGG | 7 cut(s) | 566, 761, 1255, 1596, 2105, 2749, 3153 |
| PspN4I | GGNNCC | 5 cut(s) | 767, 1710, 2931, 3251, 3270 |
| PspPI | GGNCC | 3 cut(s) | 71, 187, 2930 |
| PspPPI | RGGWCCY | 1 cut(s) | 2930 |
| PspXI | VCTCGAGB | 1 cut(s) | 507 |
| PstI | CTGCAG | 3 cut(s) | 1429, 2623, 2950 |
| PstNI | CAGNNNCTG | 2 cut(s) | 824, 1960 |
| PsuI | RGATCY | 4 cut(s) | 1052, 1144, 2448, 2950 |
| PvuII | CAGCTG | 1 cut(s) | 3020 |
| RseI | CAYNNNNRTG | 4 cut(s) | 105, 654, 2541, 2568 |
| SacI | GAGCTC | 1 cut(s) | 2313 |
| SalI | GTCGAC | 1 cut(s) | 2144 |
| SapI | GCTCTTC | 1 cut(s) | 84 |
| SatI | GCNGC | 7 cut(s) | 150, 1425, 2405, 2619, 2862, 3096, 3185 |
| Sau96I | GGNCC | 3 cut(s) | 71, 187, 2930 |
| ScaI | AGTACT | 1 cut(s) | 1856 |
| SchI | GAGTC | 8 cut(s) | 496, 519, 1190, 1676, 2485, 2606, 2647, 2713 |
| ScrFI | CCNGG | 8 cut(s) | 568, 763, 1257, 1293, 1598, 2107, 2751, 3155 |
| SduI | GDGCHC | 4 cut(s) | 2313, 2387, 2500, 2628 |
| SfaNI | GCATC | 7 cut(s) | 437, 1114, 1149, 1532, 2503, 2848, 2905 |
| SfcI | CTRYAG | 7 cut(s) | 153, 171, 516, 1425, 1514, 2619, 2946 |
| Sfr274I | CTCGAG | 1 cut(s) | 507 |
| SinI | GGWCC | 1 cut(s) | 2930 |
| SlaI | CTCGAG | 1 cut(s) | 507 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 105, 654, 2541, 2568 |
| SmlI | CTYRAG | 4 cut(s) | 507, 2312, 2677, 2967 |
| SmoI | CTYRAG | 4 cut(s) | 507, 2312, 2677, 2967 |
| SpeI | ACTAGT | 1 cut(s) | 3176 |
| SphI | GCATGC | 2 cut(s) | 31, 2221 |
| SseBI | AGGCCT | 3 cut(s) | 209, 481, 644 |
| SsiI | CCGC | 4 cut(s) | 981, 2709, 2845, 3197 |
| SspI | AATATT | 1 cut(s) | 1738 |
| SspMI | CTAG | 8 cut(s) | 528, 590, 774, 2112, 2186, 2367, 3177, 3260 |
| SstI | GAGCTC | 1 cut(s) | 2313 |
| StuI | AGGCCT | 3 cut(s) | 209, 481, 644 |
| StyD4I | CCNGG | 8 cut(s) | 566, 761, 1255, 1291, 1596, 2105, 2749, 3153 |
| StyI | CCWWGG | 4 cut(s) | 332, 1826, 1927, 2730 |
| TaiI | ACGT | 1 cut(s) | 3042 |
| TaqI | TCGA | 4 cut(s) | 508, 1445, 2145, 3044 |
| TatI | WGTACW | 4 cut(s) | 1854, 2134, 2987, 3119 |
| TscAI | CASTG | 6 cut(s) | 304, 456, 867, 2238, 2392, 2628 |
| TseFI | GTSAC | 5 cut(s) | 293, 447, 1313, 2369, 3172 |
| TseI | GCWGC | 7 cut(s) | 149, 1424, 2404, 2618, 2861, 3095, 3184 |
| Tsp45I | GTSAC | 5 cut(s) | 293, 447, 1313, 2369, 3172 |
| TspGWI | ACGGA | 6 cut(s) | 758, 913, 1933, 1954, 2142, 3231 |
| TspRI | CASTG | 6 cut(s) | 304, 456, 867, 2238, 2392, 2628 |
| Vha464I | CTTAAG | 1 cut(s) | 2677 |
| VneI | GTGCAC | 1 cut(s) | 2496 |
| VpaK11BI | GGWCC | 1 cut(s) | 2930 |
| VspI | ATTAAT | 1 cut(s) | 2319 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2184 |
| XapI | RAATTY | 2 cut(s) | 362, 2239 |
| XbaI | TCTAGA | 1 cut(s) | 589 |
| XceI | RCATGY | 6 cut(s) | 31, 67, 1196, 2090, 2221, 3120 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 672 |
| XhoI | CTCGAG | 1 cut(s) | 507 |
| XmiI | GTMKAC | 2 cut(s) | 1670, 2145 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2046 |
| XspI | CTAG | 8 cut(s) | 528, 590, 774, 2112, 2186, 2367, 3177, 3260 |
| ZrmI | AGTACT | 1 cut(s) | 1856 |
| Zsp2I | ATGCAT | 1 cut(s) | 1525 |