Protein ALWAYS EARLY
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G21430 AT3G21430 AT3G21430 |
| fragaria_vesca | FvH4_4g17660 FvH4_4g17660 FvH4_4g17660 FvH4_4g17660 |
| malus_domestica | MD16G1172500.v1.1 MD16G1172600.v1.1 |
| prunus_persica | Prupe.1G139300_v2.0.a1 Prupe.1G139300_v2.0.a1 Prupe.1G139300_v2.0.a1 Prupe.1G139300_v2.0.a1 Prupe.1G139300_v2.0.a1 Prupe.1G139300_v2.0.a1 Prupe.1G139300_v2.0.a1 Prupe.1G139300_v2.0.a1 Prupe.1G139300_v2.0.a1 |
| pyrus_communis | pycom16g14470 |
| rosa_chinensis | RchiOBHm_Chr4g0421601 |
| rosa_laevigata | RLG00000007665 RLG00000008391 |
| rosa_multiflora | Rmu_ssc0000097.1_g000002 |
| rosa_roxburghii | Rroxscaffold_5G00363850 |
| rosa_rugosa | Rorug04G0173300 Rorug04G0173400 Rorug04G0173500 Rorug04G0173600 Rorug04G0173700 |
| rosa_samantha | Rh4AG233400 Rh4BG236300 Rh4CG248000 Rh4DG232200 |
| rosa_wichuraiana | Rw4G020070 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 3044 |
| Acc36I | ACCTGC | 3 cut(s) | 1441, 2083, 2714 |
| AccB1I | GGYRCC | 1 cut(s) | 3229 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 3220 |
| AccI | GTMKAC | 3 cut(s) | 414, 1191, 1499 |
| AccII | CGCG | 1 cut(s) | 3088 |
| AciI | CCGC | 5 cut(s) | 804, 2543, 2631, 2767, 3158 |
| AclWI | GGATC | 5 cut(s) | 870, 2365, 2906, 2940, 2978 |
| AcoI | YGGCCR | 1 cut(s) | 2677 |
| AcsI | RAATTY | 5 cut(s) | 185, 2068, 2290, 2344, 2659 |
| AcuI | CTGAAG | 4 cut(s) | 69, 1811, 2196, 3126 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 247, 724, 1316, 2015, 2719, 2773, 3220 |
| AflII | CTTAAG | 1 cut(s) | 2599 |
| AflIII | ACRYGT | 2 cut(s) | 1015, 3077 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 268, 1916 |
| AhlI | ACTAGT | 1 cut(s) | 3137 |
| AjnI | CCWGG | 7 cut(s) | 389, 584, 1078, 1419, 1934, 2671, 3114 |
| Alw21I | GWGCWC | 4 cut(s) | 2142, 2216, 2422, 2550 |
| Alw26I | GTCTC | 3 cut(s) | 205, 1599, 2490 |
| Alw44I | GTGCAC | 1 cut(s) | 2418 |
| AlwI | GGATC | 5 cut(s) | 870, 2365, 2906, 2940, 2978 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1789, 3220 |
| Ama87I | CYCGRG | 1 cut(s) | 330 |
| AoxI | GGCC | 8 cut(s) | 9, 30, 302, 465, 1422, 1895, 2312, 2677 |
| ApaI | GGGCCC | 1 cut(s) | 2316 |
| ApaLI | GTGCAC | 1 cut(s) | 2418 |
| ApeKI | GCWGC | 7 cut(s) | 2233, 2327, 2330, 2540, 2783, 3056, 3145 |
| ApoI | RAATTY | 5 cut(s) | 185, 2068, 2290, 2344, 2659 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1201, 1233 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1875 |
| AspLEI | GCGC | 2 cut(s) | 291, 3088 |
| AspS9I | GGNCC | 4 cut(s) | 10, 2312, 2313, 2891 |
| AsuC2I | CCSGG | 1 cut(s) | 1116 |
| AsuHPI | GGTGA | 7 cut(s) | 375, 491, 560, 611, 1130, 1270, 2656 |
| AvaI | CYCGRG | 1 cut(s) | 330 |
| AvaII | GGWCC | 1 cut(s) | 2891 |
| BaeGI | GKGCMC | 2 cut(s) | 2316, 2422 |
| BaeI | ACNNNNGTAYC | 1 cut(s) | 3209 |
| BalI | TGGCCA | 1 cut(s) | 2679 |
| BanI | GGYRCC | 1 cut(s) | 3229 |
| BanII | GRGCYC | 2 cut(s) | 2142, 2316 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1273, 1305 |
| BauI | CACGAG | 2 cut(s) | 1725, 2415 |
| BbsI | GAAGAC | 4 cut(s) | 663, 789, 999, 1281 |
| Bbv12I | GWGCWC | 4 cut(s) | 2142, 2216, 2422, 2550 |
| BbvI | GCAGC | 7 cut(s) | 2245, 2314, 2317, 2527, 2795, 3068, 3157 |
| BccI | CCATC | 8 cut(s) | 550, 1417, 1483, 1608, 2245, 2486, 2688, 2827 |
| BceAI | ACGGC | 1 cut(s) | 3116 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1838, 1872 |
| BciT130I | CCWGG | 7 cut(s) | 391, 586, 1080, 1421, 1936, 2673, 3116 |
| BciVI | GTATCC | 1 cut(s) | 2709 |
| BclI | TGATCA | 3 cut(s) | 1360, 2002, 2572 |
| BcnI | CCSGG | 1 cut(s) | 1116 |
| BcoDI | GTCTC | 3 cut(s) | 205, 1599, 2490 |
| BcuI | ACTAGT | 1 cut(s) | 3137 |
| BfaI | CTAG | 5 cut(s) | 351, 1941, 2015, 2196, 3138 |
| BfmI | CTRYAG | 2 cut(s) | 1248, 2907 |
| BfoI | RGCGCY | 1 cut(s) | 292 |
| BfrI | CTTAAG | 1 cut(s) | 2599 |
| BfuAI | ACCTGC | 3 cut(s) | 1441, 2083, 2714 |
| BfuI | GTATCC | 1 cut(s) | 2709 |
| BglII | AGATCT | 1 cut(s) | 967 |
| BisI | GCNGC | 7 cut(s) | 2234, 2328, 2331, 2541, 2784, 3057, 3146 |
| BlsI | GCNGC | 7 cut(s) | 2235, 2329, 2332, 2542, 2785, 3058, 3147 |
| BmcAI | AGTACT | 1 cut(s) | 1685 |
| Bme1390I | CCNGG | 8 cut(s) | 391, 586, 1080, 1116, 1421, 1936, 2673, 3116 |
| Bme18I | GGWCC | 1 cut(s) | 2891 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 268, 1916 |
| BmeT110I | CYCGRG | 1 cut(s) | 330 |
| BmgT120I | GGNCC | 4 cut(s) | 10, 2312, 2313, 2891 |
| BmiI | GGNNCC | 7 cut(s) | 590, 1539, 2314, 2315, 2892, 3212, 3231 |
| BmrFI | CCNGG | 8 cut(s) | 391, 586, 1080, 1116, 1421, 1936, 2673, 3116 |
| BmrI | ACTGGG | 1 cut(s) | 116 |
| BmsI | GCATC | 6 cut(s) | 260, 937, 972, 1355, 2425, 2770 |
| BmuI | ACTGGG | 1 cut(s) | 116 |
| BoxI | GACNNNNGTC | 1 cut(s) | 197 |
| BpiI | GAAGAC | 4 cut(s) | 663, 789, 999, 1281 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1935, 1967 |
| Bpu10I | CCTNAGC | 2 cut(s) | 292, 631 |
| BpuEI | CTTGAG | 1 cut(s) | 2126 |
| BpuMI | CCSGG | 1 cut(s) | 1116 |
| BsaI | GGTCTC | 1 cut(s) | 205 |
| BsaJI | CCNNGG | 9 cut(s) | 155, 1079, 1655, 1756, 1766, 1934, 2652, 2671, 3114 |
| BsaWI | WCCGGW | 1 cut(s) | 1151 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 247, 724, 1316, 2015, 2719, 2773, 3220 |
| Bse118I | RCCGGY | 1 cut(s) | 797 |
| Bse1I | ACTGG | 6 cut(s) | 111, 1141, 1539, 2060, 2915, 3225 |
| Bse3DI | GCAATG | 2 cut(s) | 87, 1920 |
| BseBI | CCWGG | 7 cut(s) | 391, 586, 1080, 1421, 1936, 2673, 3116 |
| BseDI | CCNNGG | 9 cut(s) | 155, 1079, 1655, 1756, 1766, 1934, 2652, 2671, 3114 |
| BseGI | GGATG | 6 cut(s) | 613, 763, 1930, 2440, 2680, 2838 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 247, 724, 1316, 2015, 2719, 2773, 3220 |
| BseMI | GCAATG | 2 cut(s) | 87, 1920 |
| BseMII | CTCAG | 9 cut(s) | 186, 306, 453, 1494, 1770, 2363, 2439, 2508, 2919 |
| BseNI | ACTGG | 6 cut(s) | 111, 1141, 1539, 2060, 2915, 3225 |
| BseRI | GAGGAG | 4 cut(s) | 318, 1388, 1783, 2852 |
| BseSI | GKGCMC | 2 cut(s) | 2316, 2422 |
| BseXI | GCAGC | 7 cut(s) | 2245, 2314, 2317, 2527, 2795, 3068, 3157 |
| BseYI | CCCAGC | 1 cut(s) | 2887 |
| BsgI | GTGCAG | 4 cut(s) | 582, 996, 2316, 2387 |
| Bsh1236I | CGCG | 1 cut(s) | 3088 |
| BshFI | GGCC | 8 cut(s) | 11, 32, 304, 467, 1424, 1897, 2314, 2679 |
| BshNI | GGYRCC | 1 cut(s) | 3229 |
| BsiHKAI | GWGCWC | 4 cut(s) | 2142, 2216, 2422, 2550 |
| BsiHKCI | CYCGRG | 1 cut(s) | 330 |
| BsiSI | CCGG | 3 cut(s) | 798, 1115, 1152 |
| BslFI | GGGAC | 3 cut(s) | 320, 2613, 2904 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 247, 724, 1316, 2015, 2719, 2773, 3220 |
| BsmAI | GTCTC | 3 cut(s) | 205, 1599, 2490 |
| BsmFI | GGGAC | 3 cut(s) | 320, 2613, 2904 |
| BsmI | GAATGC | 1 cut(s) | 1348 |
| BsnI | GGCC | 8 cut(s) | 11, 32, 304, 467, 1424, 1897, 2314, 2679 |
| Bso31I | GGTCTC | 1 cut(s) | 205 |
| BsoBI | CYCGRG | 1 cut(s) | 330 |
| Bsp120I | GGGCCC | 1 cut(s) | 2312 |
| Bsp1286I | GDGCHC | 5 cut(s) | 2142, 2216, 2316, 2422, 2550 |
| Bsp1407I | TGTACA | 3 cut(s) | 2296, 2948, 3080 |
| Bsp19I | CCATGG | 2 cut(s) | 1655, 2652 |
| BspACI | CCGC | 5 cut(s) | 804, 2543, 2631, 2767, 3158 |
| BspANI | GGCC | 8 cut(s) | 11, 32, 304, 467, 1424, 1897, 2314, 2679 |
| BspCNI | CTCAG | 9 cut(s) | 187, 305, 454, 1495, 1771, 2362, 2440, 2509, 2920 |
| BspFNI | CGCG | 1 cut(s) | 3088 |
| BspHI | TCATGA | 1 cut(s) | 1363 |
| BspLI | GGNNCC | 7 cut(s) | 590, 1539, 2314, 2315, 2892, 3212, 3231 |
| BspMAI | CTGCAG | 1 cut(s) | 2911 |
| BspMI | ACCTGC | 3 cut(s) | 1441, 2083, 2714 |
| BspPI | GGATC | 5 cut(s) | 870, 2365, 2906, 2940, 2978 |
| BspT107I | GGYRCC | 1 cut(s) | 3229 |
| BspTI | CTTAAG | 1 cut(s) | 2599 |
| BspTNI | GGTCTC | 1 cut(s) | 205 |
| BsrDI | GCAATG | 2 cut(s) | 87, 1920 |
| BsrFI | RCCGGY | 1 cut(s) | 797 |
| BsrGI | TGTACA | 3 cut(s) | 2296, 2948, 3080 |
| BsrI | ACTGG | 6 cut(s) | 111, 1141, 1539, 2060, 2915, 3225 |
| BssAI | RCCGGY | 1 cut(s) | 797 |
| BssECI | CCNNGG | 9 cut(s) | 155, 1079, 1655, 1756, 1766, 1934, 2652, 2671, 3114 |
| BssNAI | GTATAC | 1 cut(s) | 1192 |
| BssSI | CACGAG | 2 cut(s) | 1725, 2415 |
| BssT1I | CCWWGG | 4 cut(s) | 155, 1655, 1756, 2652 |
| Bst1107I | GTATAC | 1 cut(s) | 1192 |
| Bst2BI | CACGAG | 2 cut(s) | 1725, 2415 |
| Bst2UI | CCWGG | 7 cut(s) | 391, 586, 1080, 1421, 1936, 2673, 3116 |
| Bst6I | CTCTTC | 3 cut(s) | 48, 725, 1020 |
| BstAFI | CTTAAG | 1 cut(s) | 2599 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1177 |
| BstAUI | TGTACA | 3 cut(s) | 2296, 2948, 3080 |
| BstC8I | GCNNGC | 5 cut(s) | 2048, 2767, 2793, 2881, 2885 |
| BstDSI | CCRYGG | 2 cut(s) | 1655, 2652 |
| BstEII | GGTNACC | 1 cut(s) | 1136 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2013 |
| BstF5I | GGATG | 6 cut(s) | 613, 763, 1930, 2440, 2680, 2838 |
| BstFNI | CGCG | 1 cut(s) | 3088 |
| BstH2I | RGCGCY | 1 cut(s) | 292 |
| BstHHI | GCGC | 2 cut(s) | 291, 3088 |
| BstMAI | GTCTC | 3 cut(s) | 205, 1599, 2490 |
| BstNI | CCWGG | 7 cut(s) | 391, 586, 1080, 1421, 1936, 2673, 3116 |
| BstNSI | RCATGY | 5 cut(s) | 1019, 1919, 2050, 2887, 3081 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 197 |
| BstPI | GGTNACC | 1 cut(s) | 1136 |
| BstSCI | CCNGG | 8 cut(s) | 389, 584, 1078, 1114, 1419, 1934, 2671, 3114 |
| BstSFI | CTRYAG | 2 cut(s) | 1248, 2907 |
| BstSLI | GKGCMC | 2 cut(s) | 2316, 2422 |
| BstUI | CGCG | 1 cut(s) | 3088 |
| BstV1I | GCAGC | 7 cut(s) | 2245, 2314, 2317, 2527, 2795, 3068, 3157 |
| BstV2I | GAAGAC | 4 cut(s) | 663, 789, 999, 1281 |
| BstX2I | RGATCY | 4 cut(s) | 875, 967, 2370, 2911 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2492 |
| BstYI | RGATCY | 4 cut(s) | 875, 967, 2370, 2911 |
| BstZ17I | GTATAC | 1 cut(s) | 1192 |
| BsuI | GTATCC | 1 cut(s) | 2709 |
| BsuRI | GGCC | 8 cut(s) | 11, 32, 304, 467, 1424, 1897, 2314, 2679 |
| BtgI | CCRYGG | 2 cut(s) | 1655, 2652 |
| BtgZI | GCGATG | 1 cut(s) | 2223 |
| BtsCI | GGATG | 6 cut(s) | 613, 763, 1930, 2440, 2680, 2838 |
| BtsI | GCAGTG | 1 cut(s) | 690 |
| BtsIMutI | CAGTG | 6 cut(s) | 127, 272, 690, 1099, 2067, 2214 |
| BveI | ACCTGC | 3 cut(s) | 1441, 2083, 2714 |
| Cac8I | GCNNGC | 5 cut(s) | 2048, 2767, 2793, 2881, 2885 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1789, 3220 |
| CciI | TCATGA | 1 cut(s) | 1363 |
| CfoI | GCGC | 2 cut(s) | 291, 3088 |
| Cfr10I | RCCGGY | 1 cut(s) | 797 |
| Cfr13I | GGNCC | 4 cut(s) | 10, 2312, 2313, 2891 |
| CseI | GACGC | 2 cut(s) | 1208, 2885 |
| DraI | TTTAAA | 4 cut(s) | 402, 1186, 2055, 2527 |
| DriI | GACNNNNNGTC | 2 cut(s) | 268, 1916 |
| EaeI | YGGCCR | 1 cut(s) | 2677 |
| Eam1104I | CTCTTC | 3 cut(s) | 48, 725, 1020 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 268, 1916 |
| EarI | CTCTTC | 3 cut(s) | 48, 725, 1020 |
| Ecl136II | GAGCTC | 1 cut(s) | 2140 |
| Eco130I | CCWWGG | 4 cut(s) | 155, 1655, 1756, 2652 |
| Eco147I | AGGCCT | 3 cut(s) | 32, 304, 467 |
| Eco24I | GRGCYC | 2 cut(s) | 2142, 2316 |
| Eco31I | GGTCTC | 1 cut(s) | 205 |
| Eco47I | GGWCC | 1 cut(s) | 2891 |
| Eco53kI | GAGCTC | 1 cut(s) | 2140 |
| Eco57I | CTGAAG | 4 cut(s) | 69, 1811, 2196, 3126 |
| Eco88I | CYCGRG | 1 cut(s) | 330 |
| Eco91I | GGTNACC | 1 cut(s) | 1136 |
| EcoICRI | GAGCTC | 1 cut(s) | 2140 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2013 |
| EcoO109I | RGGNCCY | 3 cut(s) | 10, 2313, 2891 |
| EcoO65I | GGTNACC | 1 cut(s) | 1136 |
| EcoRII | CCWGG | 7 cut(s) | 389, 584, 1078, 1419, 1934, 2671, 3114 |
| EcoT14I | CCWWGG | 4 cut(s) | 155, 1655, 1756, 2652 |
| EcoT22I | ATGCAT | 1 cut(s) | 1348 |
| EcoT38I | GRGCYC | 2 cut(s) | 2142, 2316 |
| ErhI | CCWWGG | 4 cut(s) | 155, 1655, 1756, 2652 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2808, 2840 |
| FaqI | GGGAC | 3 cut(s) | 320, 2613, 2904 |
| FauI | CCCGC | 2 cut(s) | 2638, 2774 |
| FbaI | TGATCA | 3 cut(s) | 1360, 2002, 2572 |
| FblI | GTMKAC | 3 cut(s) | 414, 1191, 1499 |
| Fnu4HI | GCNGC | 7 cut(s) | 2234, 2328, 2331, 2541, 2784, 3057, 3146 |
| FokI | GGATG | 6 cut(s) | 620, 770, 1917, 2447, 2667, 2845 |
| FriOI | GRGCYC | 2 cut(s) | 2142, 2316 |
| Fsp4HI | GCNGC | 7 cut(s) | 2234, 2328, 2331, 2541, 2784, 3057, 3146 |
| FspBI | CTAG | 5 cut(s) | 351, 1941, 2015, 2196, 3138 |
| GlaI | GCGC | 2 cut(s) | 290, 3087 |
| GluI | GCNGC | 7 cut(s) | 2234, 2328, 2331, 2541, 2784, 3057, 3146 |
| GsaI | CCCAGC | 1 cut(s) | 2891 |
| HaeII | RGCGCY | 1 cut(s) | 292 |
| HaeIII | GGCC | 8 cut(s) | 11, 32, 304, 467, 1424, 1897, 2314, 2679 |
| HapII | CCGG | 3 cut(s) | 798, 1115, 1152 |
| HgaI | GACGC | 2 cut(s) | 1208, 2885 |
| HhaI | GCGC | 2 cut(s) | 291, 3088 |
| Hin6I | GCGC | 2 cut(s) | 289, 3086 |
| HinP1I | GCGC | 2 cut(s) | 289, 3086 |
| HincII | GTYRAC | 3 cut(s) | 1975, 2113, 2412 |
| HindII | GTYRAC | 3 cut(s) | 1975, 2113, 2412 |
| HindIII | AAGCTT | 1 cut(s) | 1808 |
| HpaII | CCGG | 3 cut(s) | 798, 1115, 1152 |
| HphI | GGTGA | 7 cut(s) | 375, 491, 560, 611, 1130, 1270, 2656 |
| Hpy188III | TCNNGA | 7 cut(s) | 47, 224, 294, 710, 1364, 1386, 2754 |
| HspAI | GCGC | 2 cut(s) | 289, 3086 |
| Ksp22I | TGATCA | 3 cut(s) | 1360, 2002, 2572 |
| LmnI | GCTCC | 2 cut(s) | 594, 2137 |
| Lsp1109I | GCAGC | 7 cut(s) | 2245, 2314, 2317, 2527, 2795, 3068, 3157 |
| LweI | GCATC | 6 cut(s) | 260, 937, 972, 1355, 2425, 2770 |
| MaeI | CTAG | 5 cut(s) | 351, 1941, 2015, 2196, 3138 |
| MaeIII | GTNAC | 8 cut(s) | 116, 257, 270, 1136, 1226, 1550, 2198, 3133 |
| MfeI | CAATTG | 3 cut(s) | 408, 1172, 1644 |
| MflI | RGATCY | 4 cut(s) | 875, 967, 2370, 2911 |
| MhlI | GDGCHC | 5 cut(s) | 2142, 2216, 2316, 2422, 2550 |
| MlsI | TGGCCA | 1 cut(s) | 2679 |
| MluNI | TGGCCA | 1 cut(s) | 2679 |
| MlyI | GAGTC | 6 cut(s) | 319, 342, 1013, 2407, 2569, 2635 |
| MmeI | TCCRAC | 5 cut(s) | 742, 1202, 1678, 1904, 2457 |
| Mox20I | TGGCCA | 1 cut(s) | 2679 |
| Mph1103I | ATGCAT | 1 cut(s) | 1348 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1875 |
| MscI | TGGCCA | 1 cut(s) | 2679 |
| MslI | CAYNNNNRTG | 2 cut(s) | 477, 2463 |
| Msp20I | TGGCCA | 1 cut(s) | 2679 |
| MspA1I | CMGCKG | 1 cut(s) | 2981 |
| MspCI | CTTAAG | 1 cut(s) | 2599 |
| MspI | CCGG | 3 cut(s) | 798, 1115, 1152 |
| MspR9I | CCNGG | 8 cut(s) | 391, 586, 1080, 1116, 1421, 1936, 2673, 3116 |
| MunI | CAATTG | 3 cut(s) | 408, 1172, 1644 |
| Mva1269I | GAATGC | 1 cut(s) | 1348 |
| MvaI | CCWGG | 7 cut(s) | 391, 586, 1080, 1421, 1936, 2673, 3116 |
| MvnI | CGCG | 1 cut(s) | 3088 |
| NciI | CCSGG | 1 cut(s) | 1116 |
| NcoI | CCATGG | 2 cut(s) | 1655, 2652 |
| NlaIV | GGNNCC | 7 cut(s) | 590, 1539, 2314, 2315, 2892, 3212, 3231 |
| NmeAIII | GCCGAG | 1 cut(s) | 1873 |
| NmuCI | GTSAC | 6 cut(s) | 116, 270, 1136, 1226, 2198, 3133 |
| NsiI | ATGCAT | 1 cut(s) | 1348 |
| NspI | RCATGY | 5 cut(s) | 1019, 1919, 2050, 2887, 3081 |
| PaeI | GCATGC | 2 cut(s) | 2050, 2887 |
| PaeR7I | CTCGAG | 1 cut(s) | 330 |
| PagI | TCATGA | 1 cut(s) | 1363 |
| PceI | AGGCCT | 3 cut(s) | 32, 304, 467 |
| PciI | ACATGT | 2 cut(s) | 1015, 3077 |
| PctI | GAATGC | 1 cut(s) | 1348 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1875 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 3220 |
| PkrI | GCNGC | 7 cut(s) | 2235, 2329, 2332, 2542, 2785, 3058, 3147 |
| PleI | GAGTC | 6 cut(s) | 319, 341, 1012, 2407, 2568, 2634 |
| PpsI | GAGTC | 6 cut(s) | 319, 341, 1012, 2407, 2568, 2634 |
| PpuMI | RGGWCCY | 1 cut(s) | 2891 |
| PscI | ACATGT | 2 cut(s) | 1015, 3077 |
| PshAI | GACNNNNGTC | 1 cut(s) | 197 |
| PsiI | TTATAA | 1 cut(s) | 3044 |
| Psp124BI | GAGCTC | 1 cut(s) | 2142 |
| Psp5II | RGGWCCY | 1 cut(s) | 2891 |
| Psp6I | CCWGG | 7 cut(s) | 389, 584, 1078, 1419, 1934, 2671, 3114 |
| PspEI | GGTNACC | 1 cut(s) | 1136 |
| PspFI | CCCAGC | 1 cut(s) | 2887 |
| PspGI | CCWGG | 7 cut(s) | 389, 584, 1078, 1419, 1934, 2671, 3114 |
| PspN4I | GGNNCC | 7 cut(s) | 590, 1539, 2314, 2315, 2892, 3212, 3231 |
| PspOMI | GGGCCC | 1 cut(s) | 2312 |
| PspPI | GGNCC | 4 cut(s) | 10, 2312, 2313, 2891 |
| PspPPI | RGGWCCY | 1 cut(s) | 2891 |
| PspXI | VCTCGAGB | 1 cut(s) | 330 |
| PstI | CTGCAG | 1 cut(s) | 2911 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1789, 3220 |
| PsuI | RGATCY | 4 cut(s) | 875, 967, 2370, 2911 |
| PvuII | CAGCTG | 1 cut(s) | 2981 |
| RseI | CAYNNNNRTG | 2 cut(s) | 477, 2463 |
| SacI | GAGCTC | 1 cut(s) | 2142 |
| SatI | GCNGC | 7 cut(s) | 2234, 2328, 2331, 2541, 2784, 3057, 3146 |
| Sau96I | GGNCC | 4 cut(s) | 10, 2312, 2313, 2891 |
| ScaI | AGTACT | 1 cut(s) | 1685 |
| SchI | GAGTC | 6 cut(s) | 319, 342, 1013, 2407, 2569, 2635 |
| ScrFI | CCNGG | 8 cut(s) | 391, 586, 1080, 1116, 1421, 1936, 2673, 3116 |
| SduI | GDGCHC | 5 cut(s) | 2142, 2216, 2316, 2422, 2550 |
| SfaNI | GCATC | 6 cut(s) | 260, 937, 972, 1355, 2425, 2770 |
| SfcI | CTRYAG | 2 cut(s) | 1248, 2907 |
| Sfr274I | CTCGAG | 1 cut(s) | 330 |
| SinI | GGWCC | 1 cut(s) | 2891 |
| SlaI | CTCGAG | 1 cut(s) | 330 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 477, 2463 |
| SmlI | CTYRAG | 3 cut(s) | 330, 2141, 2599 |
| SmoI | CTYRAG | 3 cut(s) | 330, 2141, 2599 |
| SpeI | ACTAGT | 1 cut(s) | 3137 |
| SphI | GCATGC | 2 cut(s) | 2050, 2887 |
| SseBI | AGGCCT | 3 cut(s) | 32, 304, 467 |
| SsiI | CCGC | 5 cut(s) | 804, 2543, 2631, 2767, 3158 |
| SspI | AATATT | 1 cut(s) | 1567 |
| SspMI | CTAG | 5 cut(s) | 351, 1941, 2015, 2196, 3138 |
| SstI | GAGCTC | 1 cut(s) | 2142 |
| StuI | AGGCCT | 3 cut(s) | 32, 304, 467 |
| StyD4I | CCNGG | 8 cut(s) | 389, 584, 1078, 1114, 1419, 1934, 2671, 3114 |
| StyI | CCWWGG | 4 cut(s) | 155, 1655, 1756, 2652 |
| TaqI | TCGA | 3 cut(s) | 331, 2288, 3005 |
| TaqII | GACCGA | 1 cut(s) | 1780 |
| TatI | WGTACW | 5 cut(s) | 1683, 1963, 2296, 2948, 3080 |
| TscAI | CASTG | 6 cut(s) | 127, 279, 690, 1099, 2067, 2221 |
| TseFI | GTSAC | 6 cut(s) | 116, 270, 1136, 1226, 2198, 3133 |
| TseI | GCWGC | 7 cut(s) | 2233, 2327, 2330, 2540, 2783, 3056, 3145 |
| Tsp45I | GTSAC | 6 cut(s) | 116, 270, 1136, 1226, 2198, 3133 |
| TspGWI | ACGGA | 5 cut(s) | 581, 736, 1354, 1762, 3192 |
| TspRI | CASTG | 6 cut(s) | 127, 279, 690, 1099, 2067, 2221 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 3220 |
| Vha464I | CTTAAG | 1 cut(s) | 2599 |
| VneI | GTGCAC | 1 cut(s) | 2418 |
| VpaK11BI | GGWCC | 1 cut(s) | 2891 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2013 |
| XapI | RAATTY | 5 cut(s) | 185, 2068, 2290, 2344, 2659 |
| XceI | RCATGY | 5 cut(s) | 1019, 1919, 2050, 2887, 3081 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 495 |
| XhoI | CTCGAG | 1 cut(s) | 330 |
| XmiI | GTMKAC | 3 cut(s) | 414, 1191, 1499 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1875 |
| XspI | CTAG | 5 cut(s) | 351, 1941, 2015, 2196, 3138 |
| ZrmI | AGTACT | 1 cut(s) | 1685 |
| Zsp2I | ATGCAT | 1 cut(s) | 1348 |