Protein ALWAYS EARLY
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G21430 AT3G21430 AT3G21430 |
| fragaria_vesca | FvH4_4g17660 FvH4_4g17660 FvH4_4g17660 FvH4_4g17660 |
| malus_domestica | MD16G1172500.v1.1 MD16G1172600.v1.1 |
| prunus_persica | Prupe.1G139300_v2.0.a1 Prupe.1G139300_v2.0.a1 Prupe.1G139300_v2.0.a1 Prupe.1G139300_v2.0.a1 Prupe.1G139300_v2.0.a1 Prupe.1G139300_v2.0.a1 Prupe.1G139300_v2.0.a1 Prupe.1G139300_v2.0.a1 Prupe.1G139300_v2.0.a1 |
| pyrus_communis | pycom16g14470 |
| rosa_chinensis | RchiOBHm_Chr4g0421601 |
| rosa_laevigata | RLG00000007665 RLG00000008391 |
| rosa_multiflora | Rmu_ssc0000097.1_g000002 |
| rosa_roxburghii | Rroxscaffold_5G00363850 |
| rosa_rugosa | Rorug04G0173300 Rorug04G0173400 Rorug04G0173500 Rorug04G0173600 Rorug04G0173700 |
| rosa_samantha | Rh4AG233400 Rh4BG236300 Rh4CG248000 Rh4DG232200 |
| rosa_wichuraiana | Rw4G020070 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1967 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 742 |
| Acc16I | TGCGCA | 1 cut(s) | 1439 |
| Acc36I | ACCTGC | 1 cut(s) | 2425 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 3515 |
| AccI | GTMKAC | 2 cut(s) | 1328, 1690 |
| AccII | CGCG | 2 cut(s) | 1831, 2265 |
| AciI | CCGC | 2 cut(s) | 1831, 2393 |
| AclWI | GGATC | 4 cut(s) | 1437, 2215, 3262, 3317 |
| AcoI | YGGCCR | 2 cut(s) | 621, 3040 |
| AcsI | RAATTY | 4 cut(s) | 1338, 1582, 2707, 3186 |
| AcuI | CTGAAG | 4 cut(s) | 168, 1185, 2532, 3309 |
| AcyI | GRCGYC | 2 cut(s) | 435, 737 |
| AflIII | ACRYGT | 3 cut(s) | 123, 2188, 3416 |
| AgeI | ACCGGT | 1 cut(s) | 225 |
| AhlI | ACTAGT | 1 cut(s) | 3476 |
| AjnI | CCWGG | 5 cut(s) | 623, 731, 1659, 2207, 3452 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 2655, 2687, 3268, 3300 |
| Alw21I | GWGCWC | 2 cut(s) | 2764, 2785 |
| Alw26I | GTCTC | 6 cut(s) | 186, 1674, 1725, 2029, 2678, 2959 |
| Alw44I | GTGCAC | 1 cut(s) | 2781 |
| AlwI | GGATC | 4 cut(s) | 1437, 2215, 3262, 3317 |
| Ama87I | CYCGRG | 1 cut(s) | 284 |
| ApaLI | GTGCAC | 1 cut(s) | 2781 |
| ApeKI | GCWGC | 5 cut(s) | 501, 873, 2903, 3269, 3395 |
| ApoI | RAATTY | 4 cut(s) | 1338, 1582, 2707, 3186 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1103, 1135, 3002, 3034 |
| AseI | ATTAAT | 1 cut(s) | 2484 |
| AsiGI | ACCGGT | 1 cut(s) | 225 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1801, 3129 |
| AspLEI | GCGC | 5 cut(s) | 528, 1129, 1440, 1831, 2823 |
| AspS9I | GGNCC | 7 cut(s) | 4, 131, 141, 247, 267, 825, 2675 |
| AsuC2I | CCSGG | 4 cut(s) | 8, 575, 2096, 2852 |
| AsuHPI | GGTGA | 8 cut(s) | 215, 609, 797, 1513, 1579, 1993, 2369, 3429 |
| AvaI | CYCGRG | 1 cut(s) | 284 |
| AvaII | GGWCC | 1 cut(s) | 141 |
| BaeGI | GKGCMC | 2 cut(s) | 293, 2785 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 1017, 1050, 3515, 3548 |
| BalI | TGGCCA | 1 cut(s) | 3042 |
| BanII | GRGCYC | 1 cut(s) | 2764 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2739, 2771 |
| BauI | CACGAG | 3 cut(s) | 567, 1947, 3566 |
| BbsI | GAAGAC | 6 cut(s) | 1116, 1278, 1521, 1804, 2513, 3363 |
| Bbv12I | GWGCWC | 2 cut(s) | 2764, 2785 |
| BbvI | GCAGC | 5 cut(s) | 488, 885, 2890, 3281, 3407 |
| BccI | CCATC | 7 cut(s) | 491, 644, 775, 839, 1830, 2138, 2849 |
| BceAI | ACGGC | 1 cut(s) | 2786 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 275, 309, 3523, 3557 |
| BciT130I | CCWGG | 5 cut(s) | 625, 733, 1661, 2209, 3454 |
| BclI | TGATCA | 1 cut(s) | 2935 |
| BcnI | CCSGG | 4 cut(s) | 8, 575, 2096, 2852 |
| BcoDI | GTCTC | 6 cut(s) | 186, 1674, 1725, 2029, 2678, 2959 |
| BcuI | ACTAGT | 1 cut(s) | 3476 |
| BfaI | CTAG | 7 cut(s) | 66, 1029, 2214, 2288, 2691, 3477, 3560 |
| BfmI | CTRYAG | 5 cut(s) | 1491, 1596, 1724, 2904, 3267 |
| BfuAI | ACCTGC | 1 cut(s) | 2425 |
| BglII | AGATCT | 1 cut(s) | 1144 |
| BisI | GCNGC | 6 cut(s) | 502, 874, 2393, 2904, 3270, 3396 |
| BlsI | GCNGC | 6 cut(s) | 503, 875, 2394, 2905, 3271, 3397 |
| BmcAI | AGTACT | 3 cut(s) | 611, 1907, 2910 |
| Bme1390I | CCNGG | 9 cut(s) | 8, 575, 625, 733, 1661, 2096, 2209, 2852, 3454 |
| Bme18I | GGWCC | 1 cut(s) | 141 |
| BmeT110I | CYCGRG | 1 cut(s) | 284 |
| BmgT120I | GGNCC | 7 cut(s) | 4, 131, 141, 247, 267, 825, 2675 |
| BmiI | GGNNCC | 3 cut(s) | 6, 388, 827 |
| BmrFI | CCNGG | 9 cut(s) | 8, 575, 625, 733, 1661, 2096, 2209, 2852, 3454 |
| BmrI | ACTGGG | 1 cut(s) | 1031 |
| BmsI | GCATC | 8 cut(s) | 370, 500, 1114, 1149, 1702, 2724, 2788, 3223 |
| BmuI | ACTGGG | 1 cut(s) | 1031 |
| BpiI | GAAGAC | 6 cut(s) | 1116, 1278, 1521, 1804, 2513, 3363 |
| BpmI | CTGGAG | 2 cut(s) | 376, 3019 |
| Bpu10I | CCTNAGC | 2 cut(s) | 672, 868 |
| BpuEI | CTTGAG | 5 cut(s) | 1174, 1292, 1696, 1775, 2983 |
| BpuMI | CCSGG | 4 cut(s) | 8, 575, 2096, 2852 |
| Bsa29I | ATCGAT | 1 cut(s) | 1869 |
| BsaAI | YACGTR | 1 cut(s) | 3136 |
| BsaHI | GRCGYC | 2 cut(s) | 435, 737 |
| BsaI | GGTCTC | 1 cut(s) | 2029 |
| BsaWI | WCCGGW | 1 cut(s) | 225 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 668, 698, 754, 784, 1825, 1855 |
| Bse118I | RCCGGY | 3 cut(s) | 225, 619, 2132 |
| Bse3DI | GCAATG | 3 cut(s) | 324, 1218, 1488 |
| BseBI | CCWGG | 5 cut(s) | 625, 733, 1661, 2209, 3454 |
| BseCI | ATCGAT | 1 cut(s) | 1869 |
| BseMI | GCAATG | 3 cut(s) | 324, 1218, 1488 |
| BseMII | CTCAG | 9 cut(s) | 686, 1392, 1409, 2231, 2451, 2673, 2726, 2871, 3237 |
| BseRI | GAGGAG | 2 cut(s) | 555, 2577 |
| BseSI | GKGCMC | 2 cut(s) | 293, 2785 |
| BseXI | GCAGC | 5 cut(s) | 488, 885, 2890, 3281, 3407 |
| BseYI | CCCAGC | 1 cut(s) | 3236 |
| BsgI | GTGCAG | 2 cut(s) | 1176, 2750 |
| Bsh1236I | CGCG | 2 cut(s) | 1831, 2265 |
| BshTI | ACCGGT | 1 cut(s) | 225 |
| BshVI | ATCGAT | 1 cut(s) | 1869 |
| BsiHKAI | GWGCWC | 2 cut(s) | 2764, 2785 |
| BsiHKCI | CYCGRG | 1 cut(s) | 284 |
| BsiSI | CCGG | 8 cut(s) | 8, 226, 575, 620, 2095, 2133, 2851, 3021 |
| BslFI | GGGAC | 1 cut(s) | 557 |
| BsmAI | GTCTC | 6 cut(s) | 186, 1674, 1725, 2029, 2678, 2959 |
| BsmFI | GGGAC | 1 cut(s) | 557 |
| Bso31I | GGTCTC | 1 cut(s) | 2029 |
| BsoBI | CYCGRG | 1 cut(s) | 284 |
| Bsp1286I | GDGCHC | 3 cut(s) | 293, 2764, 2785 |
| Bsp1407I | TGTACA | 2 cut(s) | 1639, 3419 |
| Bsp19I | CCATGG | 1 cut(s) | 1877 |
| BspACI | CCGC | 2 cut(s) | 1831, 2393 |
| BspCNI | CTCAG | 9 cut(s) | 685, 1393, 1408, 2232, 2452, 2674, 2725, 2872, 3236 |
| BspDI | ATCGAT | 1 cut(s) | 1869 |
| BspFNI | CGCG | 2 cut(s) | 1831, 2265 |
| BspHI | TCATGA | 1 cut(s) | 3405 |
| BspLI | GGNNCC | 3 cut(s) | 6, 388, 827 |
| BspMAI | CTGCAG | 3 cut(s) | 1728, 2908, 3271 |
| BspMI | ACCTGC | 1 cut(s) | 2425 |
| BspPI | GGATC | 4 cut(s) | 1437, 2215, 3262, 3317 |
| BspQI | GCTCTTC | 1 cut(s) | 144 |
| BspTNI | GGTCTC | 1 cut(s) | 2029 |
| BsrDI | GCAATG | 3 cut(s) | 324, 1218, 1488 |
| BsrFI | RCCGGY | 3 cut(s) | 225, 619, 2132 |
| BsrGI | TGTACA | 2 cut(s) | 1639, 3419 |
| BssAI | RCCGGY | 3 cut(s) | 225, 619, 2132 |
| BssNI | GRCGYC | 2 cut(s) | 435, 737 |
| BssSI | CACGAG | 3 cut(s) | 567, 1947, 3566 |
| BssT1I | CCWWGG | 3 cut(s) | 1409, 1877, 2029 |
| Bst2BI | CACGAG | 3 cut(s) | 567, 1947, 3566 |
| Bst2UI | CCWGG | 5 cut(s) | 625, 733, 1661, 2209, 3454 |
| Bst4CI | ACNGT | 9 cut(s) | 359, 513, 1326, 1465, 1527, 1639, 2919, 3338, 3432 |
| Bst6I | CTCTTC | 5 cut(s) | 144, 285, 1096, 1120, 3158 |
| BstACI | GRCGYC | 2 cut(s) | 435, 737 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1049 |
| BstAUI | TGTACA | 2 cut(s) | 1639, 3419 |
| BstBAI | YACGTR | 1 cut(s) | 3136 |
| BstC8I | GCNNGC | 8 cut(s) | 411, 824, 878, 882, 2390, 2679, 2739, 3147 |
| BstDSI | CCRYGG | 4 cut(s) | 829, 1877, 2039, 2802 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 3163 |
| BstFNI | CGCG | 2 cut(s) | 1831, 2265 |
| BstHHI | GCGC | 5 cut(s) | 528, 1129, 1440, 1831, 2823 |
| BstMAI | GTCTC | 6 cut(s) | 186, 1674, 1725, 2029, 2678, 2959 |
| BstNI | CCWGG | 5 cut(s) | 625, 733, 1661, 2209, 3454 |
| BstNSI | RCATGY | 5 cut(s) | 127, 880, 2192, 2392, 3420 |
| BstSCI | CCNGG | 9 cut(s) | 6, 573, 623, 731, 1659, 2094, 2207, 2850, 3452 |
| BstSFI | CTRYAG | 5 cut(s) | 1491, 1596, 1724, 2904, 3267 |
| BstSLI | GKGCMC | 2 cut(s) | 293, 2785 |
| BstUI | CGCG | 2 cut(s) | 1831, 2265 |
| BstV1I | GCAGC | 5 cut(s) | 488, 885, 2890, 3281, 3407 |
| BstV2I | GAAGAC | 6 cut(s) | 1116, 1278, 1521, 1804, 2513, 3363 |
| BstX2I | RGATCY | 4 cut(s) | 1144, 1442, 2220, 3254 |
| BstYI | RGATCY | 4 cut(s) | 1144, 1442, 2220, 3254 |
| Bsu15I | ATCGAT | 1 cut(s) | 1869 |
| BsuTUI | ATCGAT | 1 cut(s) | 1869 |
| BtgI | CCRYGG | 4 cut(s) | 829, 1877, 2039, 2802 |
| BtsI | GCAGTG | 3 cut(s) | 291, 1275, 2553 |
| BveI | ACCTGC | 1 cut(s) | 2425 |
| Cac8I | GCNNGC | 8 cut(s) | 411, 824, 878, 882, 2390, 2679, 2739, 3147 |
| CciI | TCATGA | 1 cut(s) | 3405 |
| CfoI | GCGC | 5 cut(s) | 528, 1129, 1440, 1831, 2823 |
| Cfr10I | RCCGGY | 3 cut(s) | 225, 619, 2132 |
| Cfr13I | GGNCC | 7 cut(s) | 4, 131, 141, 247, 267, 825, 2675 |
| ClaI | ATCGAT | 1 cut(s) | 1869 |
| CseI | GACGC | 2 cut(s) | 443, 745 |
| CspAI | ACCGGT | 1 cut(s) | 225 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 3372, 3407 |
| DraI | TTTAAA | 2 cut(s) | 912, 2890 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 742 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 742 |
| EaeI | YGGCCR | 2 cut(s) | 621, 3040 |
| Eam1104I | CTCTTC | 5 cut(s) | 144, 285, 1096, 1120, 3158 |
| EarI | CTCTTC | 5 cut(s) | 144, 285, 1096, 1120, 3158 |
| Ecl136II | GAGCTC | 1 cut(s) | 2762 |
| Eco130I | CCWWGG | 3 cut(s) | 1409, 1877, 2029 |
| Eco147I | AGGCCT | 1 cut(s) | 541 |
| Eco24I | GRGCYC | 1 cut(s) | 2764 |
| Eco31I | GGTCTC | 1 cut(s) | 2029 |
| Eco32I | GATATC | 2 cut(s) | 176, 2302 |
| Eco47I | GGWCC | 1 cut(s) | 141 |
| Eco53kI | GAGCTC | 1 cut(s) | 2762 |
| Eco57I | CTGAAG | 4 cut(s) | 168, 1185, 2532, 3309 |
| Eco88I | CYCGRG | 1 cut(s) | 284 |
| EcoICRI | GAGCTC | 1 cut(s) | 2762 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 3163 |
| EcoO109I | RGGNCCY | 4 cut(s) | 131, 247, 267, 825 |
| EcoRI | GAATTC | 3 cut(s) | 1338, 1582, 3186 |
| EcoRII | CCWGG | 5 cut(s) | 623, 731, 1659, 2207, 3452 |
| EcoRV | GATATC | 2 cut(s) | 176, 2302 |
| EcoT14I | CCWWGG | 3 cut(s) | 1409, 1877, 2029 |
| EcoT38I | GRGCYC | 1 cut(s) | 2764 |
| ErhI | CCWWGG | 3 cut(s) | 1409, 1877, 2029 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2067, 2099 |
| FaqI | GGGAC | 1 cut(s) | 557 |
| FauNDI | CATATG | 1 cut(s) | 1738 |
| FbaI | TGATCA | 1 cut(s) | 2935 |
| FblI | GTMKAC | 2 cut(s) | 1328, 1690 |
| Fnu4HI | GCNGC | 6 cut(s) | 502, 874, 2393, 2904, 3270, 3396 |
| FriOI | GRGCYC | 1 cut(s) | 2764 |
| Fsp4HI | GCNGC | 6 cut(s) | 502, 874, 2393, 2904, 3270, 3396 |
| FspBI | CTAG | 7 cut(s) | 66, 1029, 2214, 2288, 2691, 3477, 3560 |
| FspI | TGCGCA | 1 cut(s) | 1439 |
| GlaI | GCGC | 5 cut(s) | 527, 1128, 1439, 1830, 2822 |
| GluI | GCNGC | 6 cut(s) | 502, 874, 2393, 2904, 3270, 3396 |
| GsaI | CCCAGC | 1 cut(s) | 3240 |
| GsuI | CTGGAG | 2 cut(s) | 376, 3019 |
| HapII | CCGG | 8 cut(s) | 8, 226, 575, 620, 2095, 2133, 2851, 3021 |
| HgaI | GACGC | 2 cut(s) | 443, 745 |
| HhaI | GCGC | 5 cut(s) | 528, 1129, 1440, 1831, 2823 |
| Hin1I | GRCGYC | 2 cut(s) | 435, 737 |
| Hin6I | GCGC | 5 cut(s) | 526, 1127, 1438, 1829, 2821 |
| HinP1I | GCGC | 5 cut(s) | 526, 1127, 1438, 1829, 2821 |
| HincII | GTYRAC | 7 cut(s) | 664, 693, 2248, 2449, 2775, 3215, 3300 |
| HindII | GTYRAC | 7 cut(s) | 664, 693, 2248, 2449, 2775, 3215, 3300 |
| HindIII | AAGCTT | 2 cut(s) | 407, 865 |
| HpaI | GTTAAC | 1 cut(s) | 664 |
| HpaII | CCGG | 8 cut(s) | 8, 226, 575, 620, 2095, 2133, 2851, 3021 |
| HphI | GGTGA | 8 cut(s) | 215, 609, 797, 1513, 1579, 1993, 2369, 3429 |
| HpyCH4III | ACNGT | 9 cut(s) | 359, 513, 1326, 1465, 1527, 1639, 2919, 3338, 3432 |
| HpyCH4IV | ACGT | 2 cut(s) | 1917, 3135 |
| HpySE526I | ACGT | 2 cut(s) | 1917, 3135 |
| Hsp92I | GRCGYC | 2 cut(s) | 435, 737 |
| HspAI | GCGC | 5 cut(s) | 526, 1127, 1438, 1829, 2821 |
| Ksp22I | TGATCA | 1 cut(s) | 2935 |
| KspAI | GTTAAC | 1 cut(s) | 664 |
| LguI | GCTCTTC | 1 cut(s) | 144 |
| LmnI | GCTCC | 2 cut(s) | 2988, 3277 |
| Lsp1109I | GCAGC | 5 cut(s) | 488, 885, 2890, 3281, 3407 |
| LweI | GCATC | 8 cut(s) | 370, 500, 1114, 1149, 1702, 2724, 2788, 3223 |
| MaeI | CTAG | 7 cut(s) | 66, 1029, 2214, 2288, 2691, 3477, 3560 |
| MaeII | ACGT | 2 cut(s) | 1917, 3135 |
| MaeIII | GTNAC | 5 cut(s) | 221, 353, 507, 3029, 3472 |
| MfeI | CAATTG | 2 cut(s) | 486, 1807 |
| MflI | RGATCY | 4 cut(s) | 1144, 1442, 2220, 3254 |
| MhlI | GDGCHC | 3 cut(s) | 293, 2764, 2785 |
| MlsI | TGGCCA | 1 cut(s) | 3042 |
| MluNI | TGGCCA | 1 cut(s) | 3042 |
| MlyI | GAGTC | 5 cut(s) | 556, 1106, 2108, 2858, 3026 |
| MmeI | TCCRAC | 5 cut(s) | 1078, 1900, 2161, 2177, 3369 |
| Mox20I | TGGCCA | 1 cut(s) | 3042 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1801, 3129 |
| MscI | TGGCCA | 1 cut(s) | 3042 |
| MslI | CAYNNNNRTG | 2 cut(s) | 165, 3087 |
| Msp20I | TGGCCA | 1 cut(s) | 3042 |
| MspA1I | CMGCKG | 2 cut(s) | 2395, 3443 |
| MspI | CCGG | 8 cut(s) | 8, 226, 575, 620, 2095, 2133, 2851, 3021 |
| MspR9I | CCNGG | 9 cut(s) | 8, 575, 625, 733, 1661, 2096, 2209, 2852, 3454 |
| MunI | CAATTG | 2 cut(s) | 486, 1807 |
| MvaI | CCWGG | 5 cut(s) | 625, 733, 1661, 2209, 3454 |
| MvnI | CGCG | 2 cut(s) | 1831, 2265 |
| NciI | CCSGG | 4 cut(s) | 8, 575, 2096, 2852 |
| NcoI | CCATGG | 1 cut(s) | 1877 |
| NdeI | CATATG | 1 cut(s) | 1738 |
| NlaIV | GGNNCC | 3 cut(s) | 6, 388, 827 |
| NmeAIII | GCCGAG | 1 cut(s) | 2146 |
| NmuCI | GTSAC | 5 cut(s) | 221, 353, 507, 3029, 3472 |
| NsbI | TGCGCA | 1 cut(s) | 1439 |
| NspI | RCATGY | 5 cut(s) | 127, 880, 2192, 2392, 3420 |
| PaeI | GCATGC | 2 cut(s) | 880, 2392 |
| PagI | TCATGA | 1 cut(s) | 3405 |
| PceI | AGGCCT | 1 cut(s) | 541 |
| PciI | ACATGT | 3 cut(s) | 123, 2188, 3416 |
| PciSI | GCTCTTC | 1 cut(s) | 144 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1801, 3129 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 3515 |
| PfoI | TCCNGGA | 1 cut(s) | 731 |
| PinAI | ACCGGT | 1 cut(s) | 225 |
| PkrI | GCNGC | 6 cut(s) | 503, 875, 2394, 2905, 3271, 3397 |
| PleI | GAGTC | 5 cut(s) | 556, 1106, 2107, 2858, 3026 |
| PpsI | GAGTC | 5 cut(s) | 556, 1106, 2107, 2858, 3026 |
| Ppu21I | YACGTR | 1 cut(s) | 3136 |
| PscI | ACATGT | 3 cut(s) | 123, 2188, 3416 |
| PshBI | ATTAAT | 1 cut(s) | 2484 |
| PsiI | TTATAA | 1 cut(s) | 1967 |
| Psp124BI | GAGCTC | 1 cut(s) | 2764 |
| Psp6I | CCWGG | 5 cut(s) | 623, 731, 1659, 2207, 3452 |
| PspFI | CCCAGC | 1 cut(s) | 3236 |
| PspGI | CCWGG | 5 cut(s) | 623, 731, 1659, 2207, 3452 |
| PspN4I | GGNNCC | 3 cut(s) | 6, 388, 827 |
| PspPI | GGNCC | 7 cut(s) | 4, 131, 141, 247, 267, 825, 2675 |
| PstI | CTGCAG | 3 cut(s) | 1728, 2908, 3271 |
| PsuI | RGATCY | 4 cut(s) | 1144, 1442, 2220, 3254 |
| PvuII | CAGCTG | 1 cut(s) | 3443 |
| RseI | CAYNNNNRTG | 2 cut(s) | 165, 3087 |
| SacI | GAGCTC | 1 cut(s) | 2764 |
| SapI | GCTCTTC | 1 cut(s) | 144 |
| SatI | GCNGC | 6 cut(s) | 502, 874, 2393, 2904, 3270, 3396 |
| Sau96I | GGNCC | 7 cut(s) | 4, 131, 141, 247, 267, 825, 2675 |
| ScaI | AGTACT | 3 cut(s) | 611, 1907, 2910 |
| SchI | GAGTC | 5 cut(s) | 556, 1106, 2108, 2858, 3026 |
| ScrFI | CCNGG | 9 cut(s) | 8, 575, 625, 733, 1661, 2096, 2209, 2852, 3454 |
| SduI | GDGCHC | 3 cut(s) | 293, 2764, 2785 |
| SfaNI | GCATC | 8 cut(s) | 370, 500, 1114, 1149, 1702, 2724, 2788, 3223 |
| SfcI | CTRYAG | 5 cut(s) | 1491, 1596, 1724, 2904, 3267 |
| SinI | GGWCC | 1 cut(s) | 141 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 165, 3087 |
| SmlI | CTYRAG | 5 cut(s) | 1153, 1307, 1675, 1790, 2962 |
| SmoI | CTYRAG | 5 cut(s) | 1153, 1307, 1675, 1790, 2962 |
| SpeI | ACTAGT | 1 cut(s) | 3476 |
| SphI | GCATGC | 2 cut(s) | 880, 2392 |
| SseBI | AGGCCT | 1 cut(s) | 541 |
| SsiI | CCGC | 2 cut(s) | 1831, 2393 |
| SspI | AATATT | 1 cut(s) | 2647 |
| SspMI | CTAG | 7 cut(s) | 66, 1029, 2214, 2288, 2691, 3477, 3560 |
| SstI | GAGCTC | 1 cut(s) | 2764 |
| StuI | AGGCCT | 1 cut(s) | 541 |
| StyD4I | CCNGG | 9 cut(s) | 6, 573, 623, 731, 1659, 2094, 2207, 2850, 3452 |
| StyI | CCWWGG | 3 cut(s) | 1409, 1877, 2029 |
| TaaI | ACNGT | 9 cut(s) | 359, 513, 1326, 1465, 1527, 1639, 2919, 3338, 3432 |
| TaiI | ACGT | 2 cut(s) | 1920, 3138 |
| TaqI | TCGA | 3 cut(s) | 403, 1200, 1869 |
| TatI | WGTACW | 9 cut(s) | 609, 644, 1639, 1730, 1905, 2236, 2693, 2908, 3419 |
| TauI | GCSGC | 1 cut(s) | 2395 |
| TseFI | GTSAC | 5 cut(s) | 221, 353, 507, 3029, 3472 |
| TseI | GCWGC | 5 cut(s) | 501, 873, 2903, 3269, 3395 |
| Tsp45I | GTSAC | 5 cut(s) | 221, 353, 507, 3029, 3472 |
| TspGWI | ACGGA | 5 cut(s) | 209, 442, 1708, 2056, 2244 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 3515 |
| VneI | GTGCAC | 1 cut(s) | 2781 |
| VpaK11BI | GGWCC | 1 cut(s) | 141 |
| VspI | ATTAAT | 1 cut(s) | 2484 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 3163 |
| XapI | RAATTY | 4 cut(s) | 1338, 1582, 2707, 3186 |
| XceI | RCATGY | 5 cut(s) | 127, 880, 2192, 2392, 3420 |
| XmiI | GTMKAC | 2 cut(s) | 1328, 1690 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1801, 3129 |
| XspI | CTAG | 7 cut(s) | 66, 1029, 2214, 2288, 2691, 3477, 3560 |
| ZrmI | AGTACT | 3 cut(s) | 611, 1907, 2910 |