Rorug04G0173300
MYB Family

Protein ALWAYS EARLY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0003854
Physical Location & Seq
Forward (+)
30544956 .. 30545527
572 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0173300.1

Sequence Viewer

Length: 429 bp
ATGTATTGTAAATATGAGGATATGTATTCAAGTGTTTCAATTAGGGAATGTACTACAAGATGGGCTCCAAACAGCACGCAAACTTTTGGTCATAATGTTCCATATTGGGTGAACGGAAGGCTTCGTCGAAGTGGAATTAAGAAGGATGATTTTGGATTCACCATGGTAAACTTTGAACGGTTGCTACCACCTTCGGACACTTTGGTTTTTGGTGGACAAGCACAGCAGGTGTTTTATGTGCAAGATCCAATTGAGAAAGAGTGGCATATTGCGGTGAATACAACGCCTAGAGATTACTTTGCTATGGGGATGACCACAAATCATGACCTAGTACCGCCACAAGAGTTGGACAATTCAATGATGGAGGATGATGAAGTAGAGGGAAGATGGGATATGACAGACATTCCGATAGCCGAAGAGCAGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04218 map04218
Pfam Domains
Protein Families
DIRP Myb_DNA-binding

Protein Analysis

142

Amino Acids

16.59

Weight (kDa)

4.53

Isoelectric Point (pI)

58.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4216 PF13952 36 - 90 2.5e-11 Domain of unknown function (DUF4216)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 217
Acc36I ACCTGC 1 cut(s) 217
AciI CCGC 2 cut(s) 272, 335
AclWI GGATC 1 cut(s) 239
AfaI GTAC 2 cut(s) 52, 333
AgsI TTSAA 4 cut(s) 30, 39, 176, 357
AlwI GGATC 1 cut(s) 239
ArsI GACNNNNNNTTYG 2 cut(s) 73, 105
AsuHPI GGTGA 3 cut(s) 121, 151, 286
BanII GRGCYC 1 cut(s) 67
BccI CCATC 3 cut(s) 54, 355, 381
BfaI CTAG 2 cut(s) 288, 329
BfuAI ACCTGC 1 cut(s) 217
BmiI GGNNCC 1 cut(s) 66
BsaJI CCNNGG 1 cut(s) 162
BseDI CCNNGG 1 cut(s) 162
BseGI GGATG 3 cut(s) 151, 315, 373
Bsp1286I GDGCHC 1 cut(s) 67
Bsp143I GATC 1 cut(s) 244
Bsp19I CCATGG 1 cut(s) 162
BspACI CCGC 2 cut(s) 272, 335
BspHI TCATGA 1 cut(s) 322
BspLI GGNNCC 1 cut(s) 66
BspMI ACCTGC 1 cut(s) 217
BspPI GGATC 1 cut(s) 239
BspQI GCTCTTC 1 cut(s) 411
BssECI CCNNGG 1 cut(s) 162
BssMI GATC 1 cut(s) 244
BssT1I CCWWGG 1 cut(s) 162
Bst4CI ACNGT 1 cut(s) 180
Bst6I CTCTTC 1 cut(s) 411
BstC8I GCNNGC 1 cut(s) 77
BstDSI CCRYGG 1 cut(s) 162
BstF5I GGATG 3 cut(s) 151, 315, 373
BstKTI GATC 1 cut(s) 247
BstMBI GATC 1 cut(s) 244
BstX2I RGATCY 1 cut(s) 244
BstYI RGATCY 1 cut(s) 244
BtgI CCRYGG 1 cut(s) 162
BtsCI GGATG 3 cut(s) 151, 315, 373
BveI ACCTGC 1 cut(s) 217
Cac8I GCNNGC 1 cut(s) 77
CciI TCATGA 1 cut(s) 322
Csp6I GTAC 2 cut(s) 51, 332
CspCI CAANNNNNGTGG 2 cut(s) 327, 362
CviAII CATG 2 cut(s) 163, 323
CviJI RGCY 3 cut(s) 65, 121, 413
CviKI_1 RGCY 3 cut(s) 65, 121, 413
CviQI GTAC 2 cut(s) 51, 332
DpnI GATC 1 cut(s) 246
DpnII GATC 1 cut(s) 244
Eam1104I CTCTTC 1 cut(s) 411
EarI CTCTTC 1 cut(s) 411
Eco130I CCWWGG 1 cut(s) 162
Eco24I GRGCYC 1 cut(s) 67
EcoT14I CCWWGG 1 cut(s) 162
EcoT38I GRGCYC 1 cut(s) 67
ErhI CCWWGG 1 cut(s) 162
FaeI CATG 2 cut(s) 166, 326
FatI CATG 2 cut(s) 162, 322
FokI GGATG 3 cut(s) 158, 322, 380
FriOI GRGCYC 1 cut(s) 67
FspBI CTAG 2 cut(s) 288, 329
Hin1II CATG 2 cut(s) 166, 326
HinfI GANTC 1 cut(s) 156
HphI GGTGA 3 cut(s) 121, 151, 286
Hpy166II GTNNAC 3 cut(s) 112, 169, 215
Hpy188I TCNGA 2 cut(s) 196, 408
Hpy188III TCNNGA 1 cut(s) 323
Hpy8I GTNNAC 3 cut(s) 112, 169, 215
Hpy99I CGWCG 1 cut(s) 129
HpyAV CCTTC 3 cut(s) 111, 136, 201
HpyCH4III ACNGT 1 cut(s) 180
HpyCH4V TGCA 1 cut(s) 241
Hsp92II CATG 2 cut(s) 166, 326
Kzo9I GATC 1 cut(s) 244
LguI GCTCTTC 1 cut(s) 411
LmnI GCTCC 1 cut(s) 70
LpnPI CCDG 1 cut(s) 212
MaeI CTAG 2 cut(s) 288, 329
MalI GATC 1 cut(s) 246
MboI GATC 1 cut(s) 244
MboII GAAGA 2 cut(s) 396, 428
MfeI CAATTG 1 cut(s) 249
MflI RGATCY 1 cut(s) 244
MhlI GDGCHC 1 cut(s) 67
MluCI AATT 4 cut(s) 39, 135, 249, 352
MmeI TCCRAC 1 cut(s) 327
MnlI CCTC 3 cut(s) 10, 358, 373
MseI TTAA 1 cut(s) 138
MunI CAATTG 1 cut(s) 249
NcoI CCATGG 1 cut(s) 162
NdeII GATC 1 cut(s) 244
NlaIII CATG 2 cut(s) 166, 326
NlaIV GGNNCC 1 cut(s) 66
PagI TCATGA 1 cut(s) 322
PaqCI CACCTGC 1 cut(s) 217
PciSI GCTCTTC 1 cut(s) 411
PfeI GAWTC 1 cut(s) 156
PspN4I GGNNCC 1 cut(s) 66
PsrI GAACNNNNNNTAC 2 cut(s) 168, 200
PsuI RGATCY 1 cut(s) 244
RsaI GTAC 2 cut(s) 52, 333
RsaNI GTAC 2 cut(s) 51, 332
SapI GCTCTTC 1 cut(s) 411
SaqAI TTAA 1 cut(s) 138
Sau3AI GATC 1 cut(s) 244
SduI GDGCHC 1 cut(s) 67
SetI ASST 3 cut(s) 193, 231, 330
Sse9I AATT 4 cut(s) 39, 135, 249, 352
SsiI CCGC 2 cut(s) 272, 335
SspMI CTAG 2 cut(s) 288, 329
StyI CCWWGG 1 cut(s) 162
TaaI ACNGT 1 cut(s) 180
TaqI TCGA 1 cut(s) 127
TasI AATT 4 cut(s) 39, 135, 249, 352
TatI WGTACW 1 cut(s) 50
TfiI GAWTC 1 cut(s) 156
Tru1I TTAA 1 cut(s) 138
Tru9I TTAA 1 cut(s) 138
TspDTI ATGAA 1 cut(s) 387
TspGWI ACGGA 1 cut(s) 129
XspI CTAG 2 cut(s) 288, 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.