Rorug04G0173600
MYB Family

Protein ALWAYS EARLY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0003854
Physical Location & Seq
Forward (+)
30558014 .. 30559210
1197 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0173600.1

Sequence Viewer

Length: 387 bp
ATGCTAGTTCAGCTCCACCTCCTTCCTATTTTTCTTCTTCCTCCCAAAACCCCAAACTTCACTCCCCTTCGTTCATTCAACAACAACAACAACAAAACCCTTATTTCTGTAAACCCTAAATCAAGCTTCCGAATTAGAGCTTCCACCTCCAGCGATAATAGCCAACCGCCGTGGTGGGCGAACCTGTTGCCCGCCCAAGCTTTGGGATCCGATAAAGTTCTCAGATTGATCTCCGGTGCCACTGCTAGCCCCATTGGCCAGTACGTGTCGGAACCCGTCACTTTTCTTCATTCTCTCGACCCCAGAGTCAAATTGGGTATCACTCTCTTTGCATCTGTTGCTGCAACTCTTGGACTAAAATATTGCTCGAGTTTGCTTGAGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04218 map04218
Pfam Domains
Protein Families
DIRP Myb_DNA-binding

Protein Analysis

128

Amino Acids

13.96

Weight (kDa)

10.01

Isoelectric Point (pI)

34.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 305
AccB1I GGYRCC 1 cut(s) 236
AccB7I CCANNNNNTGG 1 cut(s) 202
AciI CCGC 2 cut(s) 167, 192
AclWI GGATC 2 cut(s) 201, 214
AcoI YGGCCR 1 cut(s) 256
AfaI GTAC 1 cut(s) 263
AfiI CCNNNNNNNGG 1 cut(s) 202
AflIII ACRYGT 1 cut(s) 264
AgsI TTSAA 1 cut(s) 79
AluBI AGCT 4 cut(s) 13, 126, 140, 200
AluI AGCT 4 cut(s) 13, 126, 140, 200
AlwI GGATC 2 cut(s) 201, 214
Ama87I CYCGRG 1 cut(s) 367
AoxI GGCC 1 cut(s) 256
ApeKI GCWGC 1 cut(s) 341
AsuNHI GCTAGC 1 cut(s) 245
AvaI CYCGRG 1 cut(s) 367
BalI TGGCCA 1 cut(s) 258
BamHI GGATCC 1 cut(s) 206
BanI GGYRCC 1 cut(s) 236
BbvI GCAGC 1 cut(s) 328
BceAI ACGGC 1 cut(s) 154
BcgI CGANNNNNNTGC 2 cut(s) 169, 203
BfaI CTAG 2 cut(s) 5, 246
BglI GCCNNNNNGGC 1 cut(s) 255
BisI GCNGC 1 cut(s) 342
BlsI GCNGC 1 cut(s) 343
BmeT110I CYCGRG 1 cut(s) 367
BmiI GGNNCC 3 cut(s) 208, 238, 273
BmsI GCATC 1 cut(s) 341
BmtI GCTAGC 1 cut(s) 249
BpmI CTGGAG 1 cut(s) 133
BsaAI YACGTR 1 cut(s) 265
BsaJI CCNNGG 1 cut(s) 170
BsaWI WCCGGW 1 cut(s) 233
Bsc4I CCNNNNNNNGG 1 cut(s) 202
Bse1I ACTGG 1 cut(s) 259
BseDI CCNNGG 1 cut(s) 170
BseLI CCNNNNNNNGG 1 cut(s) 202
BseMII CTCAG 1 cut(s) 235
BseNI ACTGG 1 cut(s) 259
BseXI GCAGC 1 cut(s) 328
BshFI GGCC 1 cut(s) 258
BshNI GGYRCC 1 cut(s) 236
BsiHKCI CYCGRG 1 cut(s) 367
BsiSI CCGG 1 cut(s) 234
BslI CCNNNNNNNGG 1 cut(s) 202
BsnI GGCC 1 cut(s) 258
BsoBI CYCGRG 1 cut(s) 367
Bsp143I GATC 2 cut(s) 206, 228
BspACI CCGC 2 cut(s) 167, 192
BspANI GGCC 1 cut(s) 258
BspCNI CTCAG 1 cut(s) 234
BspLI GGNNCC 3 cut(s) 208, 238, 273
BspOI GCTAGC 1 cut(s) 249
BspPI GGATC 2 cut(s) 201, 214
BspT107I GGYRCC 1 cut(s) 236
BsrI ACTGG 1 cut(s) 259
BssECI CCNNGG 1 cut(s) 170
BssMI GATC 2 cut(s) 206, 228
BstAPI GCANNNNNTGC 1 cut(s) 338
BstBAI YACGTR 1 cut(s) 265
BstC8I GCNNGC 2 cut(s) 192, 247
BstDEI CTNAG 1 cut(s) 221
BstDSI CCRYGG 1 cut(s) 170
BstKTI GATC 2 cut(s) 209, 231
BstMBI GATC 2 cut(s) 206, 228
BstMWI GCNNNNNNNGC 4 cut(s) 10, 159, 255, 338
BstV1I GCAGC 1 cut(s) 328
BstX2I RGATCY 1 cut(s) 206
BstYI RGATCY 1 cut(s) 206
BsuRI GGCC 1 cut(s) 258
BtgI CCRYGG 1 cut(s) 170
BtsI GCAGTG 1 cut(s) 240
BtsIMutI CAGTG 1 cut(s) 240
Cac8I GCNNGC 2 cut(s) 192, 247
Csp6I GTAC 1 cut(s) 262
CspCI CAANNNNNGTGG 2 cut(s) 152, 187
CviJI RGCY 7 cut(s) 13, 126, 140, 162, 200, 249, 258
CviKI_1 RGCY 7 cut(s) 13, 126, 140, 162, 200, 249, 258
CviQI GTAC 1 cut(s) 262
DdeI CTNAG 1 cut(s) 221
DpnI GATC 2 cut(s) 208, 230
DpnII GATC 2 cut(s) 206, 228
DrdI GACNNNNNNGTC 1 cut(s) 305
DseDI GACNNNNNNGTC 1 cut(s) 305
EaeI YGGCCR 1 cut(s) 256
Eco88I CYCGRG 1 cut(s) 367
FauI CCCGC 1 cut(s) 199
Fnu4HI GCNGC 1 cut(s) 342
Fsp4HI GCNGC 1 cut(s) 342
FspBI CTAG 2 cut(s) 5, 246
GluI GCNGC 1 cut(s) 342
GsuI CTGGAG 1 cut(s) 133
HaeIII GGCC 1 cut(s) 258
HapII CCGG 1 cut(s) 234
HindIII AAGCTT 2 cut(s) 124, 198
HinfI GANTC 1 cut(s) 306
HpaII CCGG 1 cut(s) 234
Hpy166II GTNNAC 1 cut(s) 112
Hpy188I TCNGA 4 cut(s) 131, 211, 224, 271
Hpy188III TCNNGA 1 cut(s) 296
Hpy8I GTNNAC 1 cut(s) 112
HpyAV CCTTC 2 cut(s) 32, 77
HpyCH4IV ACGT 1 cut(s) 264
HpyCH4V TGCA 2 cut(s) 332, 344
HpyF10VI GCNNNNNNNGC 4 cut(s) 10, 159, 255, 338
HpyF3I CTNAG 1 cut(s) 221
HpySE526I ACGT 1 cut(s) 264
Kzo9I GATC 2 cut(s) 206, 228
LmnI GCTCC 1 cut(s) 18
LpnPI CCDG 5 cut(s) 163, 197, 247, 272, 316
Lsp1109I GCAGC 1 cut(s) 328
LweI GCATC 1 cut(s) 341
MaeI CTAG 2 cut(s) 5, 246
MaeII ACGT 1 cut(s) 264
MaeIII GTNAC 1 cut(s) 277
MalI GATC 2 cut(s) 208, 230
MboI GATC 2 cut(s) 206, 228
MboII GAAGA 3 cut(s) 26, 29, 278
MflI RGATCY 1 cut(s) 206
MlsI TGGCCA 1 cut(s) 258
MluCI AATT 2 cut(s) 132, 311
MluNI TGGCCA 1 cut(s) 258
MlyI GAGTC 1 cut(s) 315
MmeI TCCRAC 1 cut(s) 249
MnlI CCTC 3 cut(s) 29, 51, 157
Mox20I TGGCCA 1 cut(s) 258
MscI TGGCCA 1 cut(s) 258
Msp20I TGGCCA 1 cut(s) 258
MspI CCGG 1 cut(s) 234
MwoI GCNNNNNNNGC 4 cut(s) 10, 159, 255, 338
NdeII GATC 2 cut(s) 206, 228
NheI GCTAGC 1 cut(s) 245
NlaIV GGNNCC 3 cut(s) 208, 238, 273
NmuCI GTSAC 1 cut(s) 277
PaeR7I CTCGAG 1 cut(s) 367
PflMI CCANNNNNTGG 1 cut(s) 202
PkrI GCNGC 1 cut(s) 343
PleI GAGTC 1 cut(s) 314
PpsI GAGTC 1 cut(s) 314
Ppu21I YACGTR 1 cut(s) 265
PspN4I GGNNCC 3 cut(s) 208, 238, 273
PspXI VCTCGAGB 1 cut(s) 367
PsuI RGATCY 1 cut(s) 206
RsaI GTAC 1 cut(s) 263
RsaNI GTAC 1 cut(s) 262
SatI GCNGC 1 cut(s) 342
Sau3AI GATC 2 cut(s) 206, 228
SchI GAGTC 1 cut(s) 315
SetI ASST 8 cut(s) 15, 21, 128, 142, 149, 186, 202, 267
SfaNI GCATC 1 cut(s) 341
Sfr274I CTCGAG 1 cut(s) 367
SlaI CTCGAG 1 cut(s) 367
SmlI CTYRAG 2 cut(s) 367, 377
SmoI CTYRAG 2 cut(s) 367, 377
Sse9I AATT 2 cut(s) 132, 311
SsiI CCGC 2 cut(s) 167, 192
SspI AATATT 1 cut(s) 362
SspMI CTAG 2 cut(s) 5, 246
TaiI ACGT 1 cut(s) 267
TaqI TCGA 2 cut(s) 297, 368
TasI AATT 2 cut(s) 132, 311
TscAI CASTG 1 cut(s) 247
TseFI GTSAC 1 cut(s) 277
TseI GCWGC 1 cut(s) 341
Tsp45I GTSAC 1 cut(s) 277
TspDTI ATGAA 2 cut(s) 63, 278
TspRI CASTG 1 cut(s) 247
Van91I CCANNNNNTGG 1 cut(s) 202
XcmI CCANNNNNNNNNTGG 1 cut(s) 310
XhoI CTCGAG 1 cut(s) 367
XspI CTAG 2 cut(s) 5, 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.